Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000002:18085443-18085535 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_1126.ps.pdf
Locus Name: Cluster_1126
GUUAAUACACACCUGGACUAAUGUUGAUGUUGAUUCUAGUUAUGGUUACCUUAACUAGAUUCCACAUCAACAUUAGUCCAGGCUUUUACUUUC
...........(((((((((((((((((((.((.((((((((.((...)).)))))))).)).)))))))))))))))))))........... (-44.90)
.UUAAUACACACCUGGACUAA........................................................................ len:20 al:6
.UUAAUACACACCUGGACUA......................................................................... len:19 al:1
.UUAAUACACACCUGGACUAu........................................................................ len:20 al:1
..UAAUACACACCUGGACUAAU....................................................................... len:20 al:2
....AUACACACCUGGACUAAU....................................................................... len:18 al:1
.............UGGACUAAUGUUGAUGUUGAUU.......................................................... len:22 al:1
....................AUGUUGAUGUUGAUUCUAGUUAc.................................................. len:23 al:1
....................AUGUUGAUGUUGAUUCUAGUU.................................................... len:21 al:3
....................AUGUUGAUGUUGAUUCUAGUUA................................................... len:22 al:9
....................AUGUUGAUGUUGAUUCUAGUUuU.................................................. len:23 al:1
....................AUGUUGAUGUUGAUUCUAG...................................................... len:19 al:1
....................AUGUUGAUGUUGAUUCUAGUUAg.................................................. len:23 al:1
....................AUGUUGAUGUUGAUUCUAGgU.................................................... len:21 al:1
....................AUGcUGAUGUUGAUUCUAGUUA................................................... len:22 al:1
.....................UGUUGAUGaUGAUUCUAGUUAUG................................................. len:23 al:1
.....................UGUUGAUGUUGAUcCUAGUUAUG................................................. len:23 al:2
.....................UGUUGAUGUUGAUUCUAGUUAU.................................................. len:22 al:7
.....................UGUUGAUGcUGAUUCUAGUUAUG................................................. len:23 al:2
.....................UGUUGAUGUUGAUUCUAGUUA................................................... len:21 al:6
.....................UGUUGAUGUUGAUUCUAGUUAUG................................................. len:23 al:678
.....................UGUUGAUGUUGAUUCUAGU..................................................... len:19 al:3
.....................cGUUGAUGUUGAUUCUAGUUAUG................................................. len:23 al:5
.....................UGUUGAUGUUGAUUCUAGUc.................................................... len:20 al:3
.....................UGUUGAUGUUGAUUCUAGUUAcG................................................. len:23 al:2
.....................UGUUGAUGUUGAUUCUAGUUAUa................................................. len:23 al:24
.....................UGUUGAUGUUGAUUCUAGUUAUGa................................................ len:24 al:8
.....................UGcUGAUGUUGAUUCUAGUUAUG................................................. len:23 al:14
.....................UGUUGAUGUUGAUUCUAGUUAUGaU............................................... len:25 al:1
.....................UGUUaAUGUUGAUUCUAGUUA................................................... len:21 al:1
.....................UGUUGAUGUUGgUUCUAGUUAUG................................................. len:23 al:1
.....................UGUUGAUGUUGAUUCUAGUU.................................................... len:20 al:13
.....................UGUUaAUGUUGAUUCUAGUUAUG................................................. len:23 al:4
.....................UGUUGAUGUUGAUUCc........................................................ len:16 al:2
.....................UGUUGAUGUUGAUUCUAc...................................................... len:18 al:1
.....................UGUUaAUGUUGAUUCUAGU..................................................... len:19 al:2
.....................UGUUGAUGUUGAcUCUAGUUAUG................................................. len:23 al:5
.....................UGUUGAUGUUGAUUCUAGUUgUG................................................. len:23 al:1
.....................UGUUGAUGUUGAUUuUAGUUAUG................................................. len:23 al:2
.....................UGUUGAUGUUGAUUCUAGUUAUGGUUAC............................................ len:28 al:1
.....................UGUUGAUGUUGAUUCUAGUUAUu................................................. len:23 al:1
.....................UGUUGAUGUUGAUUCUAGUUgU.................................................. len:22 al:1
.....................UGUUGAUGUUGAUUCUgGUUAUG................................................. len:23 al:5
.....................UGUUGAUGUUGAUUCUAGUUAUGGUUACCU.......................................... len:30 al:1
.....................UGUUGAUGUUGAUUCUgGUUAU.................................................. len:22 al:2
.....................UGUUGAcGUUGAUUCUAGUUAUG................................................. len:23 al:2
.....................UGUUGAUGUUGAUUCUAGUUAUGu................................................ len:24 al:11
.....................UGUUGAUGUUGAUUCUAu...................................................... len:18 al:1
.....................UGUUGgUGUUGAUUCUAGUUAUG................................................. len:23 al:2
.....................UGUUGAUGUUGAUUCUAGUUAUGGUUACCUU......................................... len:31 al:1
.....................UGUUGAUGUUGAUUCUAGUcAUG................................................. len:23 al:2
......................GUUGAUGUUGAUUCUAGUUAUGGUUACCa.......................................... len:29 al:12
......................GUUGAUGUUGAUUCUAGUUAUGGUUACu........................................... len:28 al:8
......................GcUGAUGUUGAUUCUAGUUAUG................................................. len:22 al:87
......................GUUGAUGUUGgUUCUAGUUAUGGUUA............................................. len:26 al:2
......................GUgGAUGUUGAUUCUAGUUAUGGUU.............................................. len:25 al:1
......................GUUGAUGUUGAUUCUAGUUAUGGUUu............................................. len:26 al:2
......................GUUGAUGUUGAUUCUAGUUAUGGUUACC........................................... len:28 al:5
......................GUUGAUGUUGAUUCUAGUUgU.................................................. len:21 al:1
......................GUUGAUGUUGAUUCUAGUU.................................................... len:19 al:6
......................GUUGAUGUUGAUUCUAGcUAUG................................................. len:22 al:1
......................GaUGAUGUUGAUUCUAGUUAUG................................................. len:22 al:1
......................GUUaAUGUUGAUUCUAGUUAUGG................................................ len:23 al:1
......................GUUGAUGUUGAUUCUAGUUAUGGUUA............................................. len:26 al:39
......................GUUGAUGUUGAUUCUAGUUAUGG................................................ len:23 al:16
......................GUUGAUGcUGAUUCUAGUUAUG................................................. len:22 al:1
......................GcUGAUGUUGAUUCUAGUUAUGG................................................ len:23 al:3
......................GUUGAUGUUGAUUCUAGUUAUGGUUACCaU......................................... len:30 al:1
......................GUUGcUGUUGAUUCUAGUUAUG................................................. len:22 al:1
......................GUUGAUGUUGAUUCUAGUUAUGu................................................ len:23 al:2
......................GUUGAUGUUGAUUCUAGUUAUGGUUACa........................................... len:28 al:4
......................GUUGAUGUUGAUUCUAGUUAU.................................................. len:21 al:16
......................GUUGAUGUUGAUUCUAGUUAUG................................................. len:22 al:361
......................GUUGAUGUUGAUUCUAGUUAUGGUUAu............................................ len:27 al:5
......................GUUGAUGUUGAUcCUAGUUAUG................................................. len:22 al:1
......................GUUaAUGUUGAUUCUAGUUAUG................................................. len:22 al:1
......................GUUGAUGUUGAUUCUAGUc.................................................... len:19 al:2
......................GUUGAUGUUGAUUCUAGUUAUGGUUgCCU.......................................... len:29 al:2
......................GcUGAUGUUGAUUCUAGUUAUGGUUAC............................................ len:27 al:2
......................GUUGAUGUUGgUUCUAGUUAUG................................................. len:22 al:2
......................GUUGAUGUUGAUUCUAGUUAUGa................................................ len:23 al:5
......................GUUGAUGUUGAUUCUAGUUAUa................................................. len:22 al:15
......................GUUGAUGUUGAUUCUAGUUAUu................................................. len:22 al:1
......................GUUGuUGUUGAUUCUAGUUAUG................................................. len:22 al:1
......................GUUGAUGUUGAUUCUAGUUAUGGUU.............................................. len:25 al:21
......................GcUGAUGUUGAUUCUAGUUAUGGUU.............................................. len:25 al:1
......................GUcGAUGUUGAUUCUAGUUAUG................................................. len:22 al:2
......................GUUGAaGUUGAUUCUAGUUAUG................................................. len:22 al:1
......................GUUGgUGUUGAUUCUAGUUAUG................................................. len:22 al:1
......................GUUGAUGUUGAUUCUAGUUAUGGUUg............................................. len:26 al:3
......................GUUGAUGUUGAUUCUAGUUAUGGUUAa............................................ len:27 al:1
......................aUUGAUGUUGAUUCUAGUU.................................................... len:19 al:1
......................GUUGAUGUUGAUUCUAGU..................................................... len:18 al:2
......................GcUGAUGUUGAUUCUAGUUAUGGUUACCUU......................................... len:30 al:1
......................GUUGAUGUUGAUUCUAGUUAUGGUUACCU.......................................... len:29 al:10
......................GUUGAUGUUGAUUCUgGUUAUG................................................. len:22 al:2
......................GUUGAUGUUGAUUCUAGUcAUG................................................. len:22 al:1
......................GUUGAUaUUGAUUCUAGUUAUGGUUACCUU......................................... len:30 al:1
......................GUUGAUGUUGAUUCUAaUUAUG................................................. len:22 al:1
......................GUUGAUGUUGAUUCUAGUUAUGGUa.............................................. len:25 al:2
......................GUUGAUGUUGAUUCUAGUUAUGGU............................................... len:24 al:11
......................GcUGAUGUUGAUUCUAGUUAU.................................................. len:21 al:5
......................GUUGAUGUUGAUUCUAGUUA................................................... len:20 al:6
......................GUUGAUGUUGAUUCUAGUUAUGGUUACCUU......................................... len:30 al:1
......................GUUGAUGUUGAUUCUAGUUAUGGc............................................... len:24 al:2
......................GUUGAUGUUGAUUCUAGUUAUGuUU.............................................. len:25 al:1
......................GUUGAUGUUGAUUCUAGUUAUGGa............................................... len:24 al:1
......................GUUGAUGUUGAcUCUAGUUAUGGUU.............................................. len:25 al:1
......................GUUGAUGUUGAUUCUAGUUAUGGUUAC............................................ len:27 al:29
.......................UUGAUGUUGAUUCUAGUUAUGG................................................ len:22 al:13
.......................UUGAUGUUGAUUCUAGUUAUGu................................................ len:22 al:1
.......................UUGAUGcUGAUUCUAGUUAU.................................................. len:20 al:1
.......................UUGAUGUUGAUUCUAGUUAUG................................................. len:21 al:1
.......................UUGAUGUUGAUUCUAGUUAUGGUUA............................................. len:25 al:1
.......................UUGAUGUcGAUUCUAGUUAUGGU............................................... len:23 al:1
.......................UUGAUGUUGAUUCUAGUUAUGGU............................................... len:23 al:4
.......................cUGAUGUUGAUUCUAGUUAUGG................................................ len:22 al:1
.......................UUGAUGUUGAUUCUAGUUgU.................................................. len:20 al:1
.......................cUGAUGUUGAUUCUAGUUAUG................................................. len:21 al:6
.......................UUGAUGUUGAUUCUAGUUAc.................................................. len:20 al:1
.......................cUGAUGUUGAUUCUAGUUAUGGU............................................... len:23 al:1
.......................UUGAUGUUGAUUCUAGUUAUGGa............................................... len:23 al:1
.......................UUGAUGUUGAUUCUAGUUAUGGc............................................... len:23 al:1
.......................UUGAUGUUGAUUCUAGUUAU.................................................. len:20 al:2
........................UGAUGUUGAUUCUAGUUAUG................................................. len:20 al:1
........................UGAUGUUGAUUCUAGUUAUGG................................................ len:21 al:2
............................................GUUACCUUAACUAGAUUCCACAUCAACAUc................... len:30 al:1
............................................GUUACCUUAACUAGAUUCCACAUCAACAU.................... len:29 al:1
.................................................CUUAACUAGAUUCCACAUCAACAUU................... len:25 al:2
.................................................CUUAACUAGAUUCCACAUCAACAU.................... len:24 al:1
.................................................CUUAACUAGAUUCCACAUCAACA..................... len:23 al:2
.................................................CUUAACUAGAUUCCACAUCAACAUa................... len:25 al:2
..................................................UUAACUAGAUUCCACAUCAACA..................... len:22 al:12
..................................................UUAACUAGAUUCCACAUCAACAUU................... len:24 al:47
..................................................UUAACUAGAUUCCACAUCAAC...................... len:21 al:11
..................................................UUAACUAGAUUCCACAUCAACAU.................... len:23 al:48
..................................................UUAACUAGAUUCCACAUCAACAUa................... len:24 al:4
..................................................UUAACUAGAUUCCACAUCAACAUc................... len:24 al:1
..................................................UUAACUAGAUUCCACAUCAACAc.................... len:23 al:4
..................................................UUAACUAGAUUCCACAUCA........................ len:19 al:2
..................................................UUAACUAGAUUCCACAUCAACAgU................... len:24 al:1
..................................................UUAACUAGAcUCCACAUCAACAUU................... len:24 al:1
..................................................UUAACUAGAUUCCACAUCAA....................... len:20 al:3
..................................................UUAACUAGAUUCCACAUu......................... len:18 al:1
..................................................UUAACUAGAUUCCACgUCA........................ len:19 al:2
..................................................UUAACUAGAUUCCACAUC......................... len:18 al:9
..................................................cUAACUAGAUUCCACAUCAAC...................... len:21 al:1
..................................................UUAACUAGAUUCCACAUCAACgU.................... len:23 al:1
..................................................UUAACUAGAUUCCACAcCAACA..................... len:22 al:1
..................................................UUAACUAGgUUCCACAUCAACAUU................... len:24 al:1
..................................................UUAACUAGAUUCCACAUCAACg..................... len:22 al:3
..................................................UUAACUgGAUUCCACAUCAACAU.................... len:23 al:2
..................................................UUAACUAGAUUCCACAUuA........................ len:19 al:1
..................................................UUAACUAGAUUCCACAUCAACu..................... len:22 al:2
...................................................UAACcAGAUUCCACAUCAACAUU................... len:23 al:1
...................................................UAACUAGAUUCCACAUCAACAUUu.................. len:24 al:4
...................................................UAACUAGAUUCCACAUCAACAUc................... len:23 al:31
...................................................UAACUAGAUUCCACAUCAACAUa................... len:23 al:2
...................................................UAgCUAGAUUCCACAUCAACAUU................... len:23 al:2
...................................................UAACUAGAUUCCACAUCAACgUU................... len:23 al:1
...................................................UAACUAGAUUCCACAUCAAa...................... len:20 al:2
...................................................UAACUAGAUUCCACAUCA........................ len:18 al:16
...................................................UAACUAGAUUCCACAUCAACAa.................... len:22 al:4
...................................................UAACUAGAUUCCACAUCAgCAUU................... len:23 al:3
...................................................UAACUAGAUUCCACAUuAACAUU................... len:23 al:3
...................................................UAACUAGAUUCCACAUCAACAgU................... len:23 al:2
...................................................aAACUAGAUUCCACAUCAA....................... len:19 al:1
...................................................UAACUAGAUUCCACAUCAuCAUU................... len:23 al:1
...................................................UAACUAGAUUCCACAUCAAC...................... len:20 al:41
...................................................aAACUAGAUUCCACAUCAACAUU................... len:23 al:1
...................................................UAACUAGAUUCCACAUCAACAc.................... len:22 al:4
...................................................UAACUAGAUUCCACgUCAACAU.................... len:22 al:1
...................................................UAACUAGAUUCCgCAUCAACAU.................... len:22 al:1
...................................................UAACUAGAUUCCACgUCAACAUU................... len:23 al:3
...................................................UAACUgGAUUCCACAUCAACAUU................... len:23 al:2
...................................................UAACUAGAUUCCACAcCAACAUU................... len:23 al:4
...................................................UAACUAGAUUCCAaAUCAAC...................... len:20 al:1
...................................................UAACUAGcUUCCACAUCAACAUU................... len:23 al:1
...................................................UAACUAGAUcCCACAUCAACAU.................... len:22 al:1
...................................................UAACUAGAUUCCACAUCAACgU.................... len:22 al:4
...................................................UAACUAGAUUCCACAUCAACA..................... len:21 al:26
...................................................UAACUAGAUUCCACAUCgACAUU................... len:23 al:2
...................................................cAACUAGAUUCCACAUCAACAUU................... len:23 al:2
...................................................UAACUAGAUUCCAuAUCAACAU.................... len:22 al:1
...................................................UAACUAGAUUCCACAUCAAu...................... len:20 al:2
...................................................UAACUAGAUUCCACAUCAACAUU................... len:23 al:498
...................................................UAACUAGAUUCCACAUCAA....................... len:19 al:5
...................................................UAACUAGAUUCCACAUCAACAaU................... len:23 al:3
...................................................UAACUAGAUUCCcCAUCAACAUU................... len:23 al:1
...................................................UAACUAGAUUCCACAUCAACAU.................... len:22 al:99
...................................................UAACUAGAUUCCACAUCAACAUg................... len:23 al:2
...................................................UAACUAGAUUCCACAUCuACAUU................... len:23 al:1
...................................................UAACUAGAUUCCACAUCAACAcU................... len:23 al:1
....................................................AACUAGAUUCCACAUCAACAU.................... len:21 al:1
......................................................CUAGAUUCCACAUCAACAUU................... len:20 al:2
......................................................CUAGAUUCCACAUCAACAc.................... len:19 al:1