Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000002:16106559-16106650 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_1104.ps.pdf
Locus Name: Cluster_1104
CUGAAAUACAGCUGAAGCCUGAUGGGCGAUAAGGAUUCACAUCUUUAAGGUGUUAUUUUUAUCGUCCAUUAGGAUUUGCGUGUAAAGAUACC
......((((((.(((.(((((((((((((((((((..((((((...)))))).))))))))))))))))))).))))).))))........ (-36.40)
................GCCUGAUGGGCGAUAAGGAUUC...................................................... len:22 al:1
...................UGAUGGGCGAUAAGGAUUCACAUa................................................. len:24 al:1
...................UGAUGGGCGAUAAGGAUUCACAUC................................................. len:24 al:2
....................aAUGGGCGAUAAGGAUUCACAUCUUUAAGG.......................................... len:30 al:1
....................GAUGGGCGAUAAGGAUUCACAUCUUUAAGa.......................................... len:30 al:1
....................GAUGGGCGAUAAGGAUUCACAUCg................................................ len:24 al:1
....................GAUGGGCGAUAAGGAUUCACAU.................................................. len:22 al:49
....................GAUGGGCGAUAAGGAUUCACAc.................................................. len:22 al:2
....................GAUGGGCGAUAAGGAUUCACAUuU................................................ len:24 al:5
....................GgUGGGCGAUAAGGAUUCACAUC................................................. len:23 al:1
....................GAUGaGCGAUAAGGAUUCACAUC................................................. len:23 al:1
....................GAUGGGCGAUAAGGAUUCACAUCa................................................ len:24 al:4
....................GAUGGGCGAUAAGGAUUCACAUa................................................. len:23 al:9
....................GAUGGGCGAUAAGGAUUCAC.................................................... len:20 al:12
....................GAUGGGCGAUAAGGAUUCA..................................................... len:19 al:4
....................GAUGGGCGAUAAGGAUUCACAUCUU............................................... len:25 al:5
....................GAUGGGCGAUAAGGAUUCACuU.................................................. len:22 al:1
....................GAUGGGCGAUAAGGAUUCACAcC................................................. len:23 al:1
....................GAUGGGCGAUAAGGAUUCu..................................................... len:19 al:2
....................GAUGGGCGAUAAGGAUUCACAUCc................................................ len:24 al:6
....................aAUGGGCGAUAAGGAUUCACAUC................................................. len:23 al:2
....................GAUGGGCGAUAAGGAUUCACAUCaUUA............................................. len:27 al:1
....................GAUGGGCGAUAAGGAUUCACAa.................................................. len:22 al:1
....................GAUGGGCGAUAAGGAUaCACAUC................................................. len:23 al:1
....................GAUGGGCGAUAAGGAUUCACAUC................................................. len:23 al:220
....................GAUGGGCGAUAAGGAUUCACAUaU................................................ len:24 al:1
....................GAUGGGCGAUAAGGAUUCACAUu................................................. len:23 al:100
....................GAUGGGCGAUgAGGAUUCACAUC................................................. len:23 al:1
....................GgUGGGCGAUAAGGAUUCACA................................................... len:21 al:1
....................GAUGGGCGAUAAGGAUUCACAUCUUU.............................................. len:26 al:5
....................GAUGaGCGAUAAGGAUUCACAUCUU............................................... len:25 al:1
....................GAUGGGCGgUAAGGAUUCACAUC................................................. len:23 al:1
....................GAUGGGCGAUuAGGAUUCACAUCUU............................................... len:25 al:1
....................aAUGGGCGAUAAGGAUUCACA................................................... len:21 al:1
....................GAUGGGCGAUAAGGAUUC...................................................... len:18 al:5
....................GAUGGGCGAUAAGGAUUCACgU.................................................. len:22 al:1
....................GAUGGGCGAUAAGGAUUCACu................................................... len:21 al:4
....................GAUGGGCGAUAAGGAUUCACgUC................................................. len:23 al:1
....................GAUGGGCGAUAAGGAUUCACAUCUUUAAGG.......................................... len:30 al:4
....................GAUGGGCGAUAAGGAUUCACAUCU................................................ len:24 al:34
....................GcUGGGCGAUAAGGAUUCACAUC................................................. len:23 al:1
....................GAUGGGCGAUAAGGAUUCACA................................................... len:21 al:34
....................GAUGGGCGAUAAGGAUUCACc................................................... len:21 al:2
....................GAUGGGCGAUAAGGAUUCACAUCUUUAAGGc......................................... len:31 al:2
....................GAUGGGCGAUAAGGAUUCACAg.................................................. len:22 al:1
....................aAUGGGCGAUAAGGAUUCACAU.................................................. len:22 al:1
.....................AUGGGCGAUAAGGAUUCACAUaU................................................ len:23 al:1
.....................AUGGGCGAUAAGGAUUCACAaC................................................. len:22 al:1
.....................AUGGGCGAUAAGGAUUCACuU.................................................. len:21 al:1
.....................AUGGGCGAUAAGGAUUCACAUC................................................. len:22 al:33
.....................AUGGGCGAUAAGGAUUCACAUCUUUAAGGU......................................... len:30 al:2
.....................AUGGGCGAUAAGGAUUCACAUu................................................. len:22 al:1
.....................AUGGGCGAUAAGGAUUCACAU.................................................. len:21 al:7
.....................AUGGGCGAUAAGGAUUCACAcC................................................. len:22 al:1
.....................AUGGGCGAUAAGGAUUCAC.................................................... len:19 al:2
.....................AUGGGCGAUAAGGAUUCACAUCUUUAAGG.......................................... len:29 al:3
.....................AUGGGCGAUAAGGAUUCACAUCU................................................ len:23 al:16
.....................AUGGGCGAUAAGGAUUCACA................................................... len:20 al:3
.....................AUGGGCGAUAAGGAUUCACAUCa................................................ len:23 al:6
.....................AUGGGCGAUAAGGAUUCACAUCc................................................ len:23 al:3
.....................AUGGGuGAUAAGGAUUCACAUC................................................. len:22 al:1
.....................AUGGGCGAUAAGGAUUCACAUCUU............................................... len:24 al:1
......................UGGGCGAUAAaGAUUCACAUC................................................. len:21 al:1
......................UGGGCGAUAAGGAUUCACAUCUUUAAGGU......................................... len:29 al:1
......................UGGGCGAUAAGGAUUCAC.................................................... len:18 al:2
......................UGGGCGAUAAGGAcUCACAUCU................................................ len:22 al:1
......................UGGGCGAUAAGGAUUCACAUCU................................................ len:22 al:80
......................UGGGCGAUAAGGAUUCACAUCa................................................ len:22 al:4
......................UGGGCGAcAAGGAUUCACAUCUUUAAGGUGU....................................... len:31 al:1
......................UGGGCGAUAAGGAUUCACAUCUUUu............................................. len:25 al:3
......................UGGGCGAUAAGGAUUCACAUCUUUAAGGUGU....................................... len:31 al:2
......................UGGGCGAUAAGGAUUCACAUu................................................. len:21 al:37
......................UGGGCGAUAAGGAUUCACAUCUUU.............................................. len:24 al:12
......................UGGGCGAUAAGGAUUCACAUCUU............................................... len:23 al:5
......................UGGGCGAUAAGGAUUCACAUCc................................................ len:22 al:5
......................UGGGCGAUAAGGAUcCACAUCU................................................ len:22 al:1
......................UGGGCGAUAAGGAUUCAuAUC................................................. len:21 al:1
......................UGGGCGAUAAGGAUUCACAcC................................................. len:21 al:1
......................UGGGCGgUAAGGAUUCACAUC................................................. len:21 al:1
......................UGGGCGAUAAGGAUUCACgUC................................................. len:21 al:3
......................UGGGCGAUcAGGAUUCACAUC................................................. len:21 al:1
......................UGGGCGAUAAGGAUUCACAUCUUUAAGGUGc....................................... len:31 al:1
......................UGGGCGAUAAGGAUUCACA................................................... len:19 al:12
......................UGGGCGAUAAGGAUUCACAUCUUUAAGG.......................................... len:28 al:3
......................UGGGCGAUAAGGAUUCACgU.................................................. len:20 al:1
......................UGGGCGAUAAGGAUUCACAUC................................................. len:21 al:178
......................UGGGCGAUAAGGAUUCACAUCg................................................ len:22 al:1
......................UGaGCGAUAAGGAUUCACAUC................................................. len:21 al:1
......................UGGGCGAUAAGGAUaCACAUC................................................. len:21 al:2
......................UGGGCGAUAAGGAUUCACAU.................................................. len:20 al:8
......................UGGGCGAUgAGGAUUCACAUC................................................. len:21 al:1
........................GGCGAUAAGGAUUCgCAUC................................................. len:19 al:1
........................GGCGAUAAGGAUUCACAUCU................................................ len:20 al:1
.........................GCGAUAAGGAUUCACAUC................................................. len:18 al:1
...........................................UUUAAGGUGUUAUUUUUAUCGUCCAUUAGu................... len:30 al:2
................................................GGUGUUAUUUUUAUCGUCCAUUAGGAUU................ len:28 al:1
.................................................GUGUUAUUUUUAUCGUCCAUUAGa................... len:24 al:1
.................................................GUGUUAUUUUUAUCGUCCAUc...................... len:21 al:1
.................................................GUGUUAUUUUUAUCGUCCAUUAGu................... len:24 al:1
..................................................UGUUAUUUUUAUCGUCCAUg...................... len:20 al:5
..................................................UGUUAUUUUUAUCGUCCAUUAGuA.................. len:24 al:17
..................................................UGUUAUUUUUAcCGUCCAUUAG.................... len:22 al:1
..................................................UGUUAUUUUUAUCGUCCgUU...................... len:20 al:3
..................................................UGUUAUUUUUAUCGUC.......................... len:16 al:1
..................................................UGUUAUUUUUAUCGUCCuUU...................... len:20 al:1
..................................................UGUUAUUUUcAUCGUCCAUUAG.................... len:22 al:3
..................................................UGUUAUUUUUAUCGUCCAUU...................... len:20 al:1247
..................................................UGUUAUcUUUAUCGUCCAUU...................... len:20 al:2
..................................................UGUUAUUUUUAUCGUCCAUUAG.................... len:22 al:533
..................................................UGUUAUUUUUcUCGUCCAUUAG.................... len:22 al:1
..................................................UGUUAUUUUUAUCaUCCAUUAGG................... len:23 al:1
..................................................UGUUAUUUUUAUCGUCCAUUA..................... len:21 al:45
..................................................UGUUAUUUUUAUCGUCCAUUAc.................... len:22 al:1
..................................................UGUUAUUUUUAUCGUCCAUUu..................... len:21 al:2
..................................................UGUUAUUUUUAUCGUCCAaU...................... len:20 al:4
..................................................UGUUAUgUUUAUCGUCCAUUAG.................... len:22 al:1
..................................................UGUUAUUUUUAUCGUCCAUc...................... len:20 al:55
..................................................UGUUAUUcUUAUCGUCCAUUAG.................... len:22 al:2
..................................................UGUUAUUUUUAUCGUCCAUUAa.................... len:22 al:15
..................................................cGUUAUUUUUAUCGUCCAUU...................... len:20 al:3
..................................................UGUUAUUUUUAUCGUCCAU....................... len:19 al:8
..................................................UGUUAUUUUUAUCGUCCAUUAGa................... len:23 al:85
..................................................UGUUAUUUUUAUCGUCCAUUuG.................... len:22 al:2
..................................................UGUUAUUUUUAUCGcCCAUU...................... len:20 al:6
..................................................UGUUAUUUUUAUCGUCCAgU...................... len:20 al:14
..................................................UGUUAUUUUUcUCGUCCAUU...................... len:20 al:2
..................................................UGUUAcUUUUAUCGUCCAUU...................... len:20 al:2
..................................................aGUUAUUUUUAUCGUCCAUUAG.................... len:22 al:1
..................................................UGUUAUUUUUAUCGUCCAUUAGGu.................. len:24 al:1
..................................................UGUUgUUUUUAUCGUCCAUU...................... len:20 al:2
..................................................UGUUAUUUUUAUCGUCCAcU...................... len:20 al:6
..................................................UGUUAUUUUUAUCGUCuAUU...................... len:20 al:1
..................................................UGUUcUUUUUAUCGUCCAUU...................... len:20 al:5
..................................................UGUUAUUUUUAUCGUCCAUUAGaA.................. len:24 al:1
..................................................UGUUAUUUUUAUuGUCCAUUAG.................... len:22 al:1
..................................................cGUUAUUUUUAUCGUCCAUUAG.................... len:22 al:3
..................................................UGUUAUUUUUAUCGUCCAUUAu.................... len:22 al:6
..................................................UGcUAUUUUUAUCGUCCAUU...................... len:20 al:5
..................................................UGUUAUUUUUAUCGUCCAUUcG.................... len:22 al:1
..................................................UGUUAUUUUUAcCGUCCAUU...................... len:20 al:3
..................................................UGUUAUUUUcAUCGUCCAUU...................... len:20 al:3
..................................................UGUUAUUUcUAUCGUCCAUU...................... len:20 al:2
..................................................UGUUAUUUUUAUCGUCCgUUAG.................... len:22 al:2
..................................................UGUUAUUUUUAUCGUCCAUUAGG................... len:23 al:50
..................................................UGUUAUUUUUAUCGUCCAUUAGu................... len:23 al:8333
..................................................aGUUAUUUUUAUCGUCCAUU...................... len:20 al:2
..................................................UGUUAUUUUUAUCGUCCA........................ len:18 al:4
..................................................UGUUAUUUUUgUCGUCCAUU...................... len:20 al:2
..................................................UGUUAUUUUUAUCcUCCAUU...................... len:20 al:2
..................................................UGUUAUUUUUAUCGUCCAUUAGc................... len:23 al:642
..................................................UGUUAUUUUUAUCGUCCAUUgG.................... len:22 al:2
..................................................UGUcAUUUUUAUCGUCCAUU...................... len:20 al:2
..................................................UGUUAUUUUUAUCGUCCAUa...................... len:20 al:9
..................................................UGUUAUUUcUAUCGUCCAUUAG.................... len:22 al:2
...................................................GUUAUUUUUAUCGUCCAUUAGu................... len:22 al:39
...................................................GUUAUUUUUAUCGUCCAUUAG.................... len:21 al:12
...................................................GUUAUUUUUAUCGUCCAUU...................... len:19 al:3
....................................................UUAUUUUUAUCGUCCAUUAGa................... len:21 al:2
....................................................UUAUUUUUAUCGUCCAUU...................... len:18 al:7
....................................................UUAUUUUUAUCGUCCAUc...................... len:18 al:1
....................................................UUAUUUUUAUCGUCCAUUAGu................... len:21 al:32
....................................................UUAUUUUUAUCGUCCAUUAGc................... len:21 al:1
....................................................UUAUUUUUAUCGUCCAUUAG.................... len:20 al:2
.....................................................UAUUUUUAUCGUCCAUUAGu................... len:20 al:1
......................................................AUUUUUAUCGUCCAUUAGu................... len:19 al:2
.......................................................UUUUUAUCGUCCAUUAGu................... len:18 al:1
.......................................................UUUUUAUCGUCCAUUAG.................... len:17 al:1
.........................................................UUUAUCGUCCAUUAGa................... len:16 al:1
....................................................................UUAGGAUUUGCGUGUAAAGAU... len:21 al:1