Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/data/Pocillopora_meandrina_HIv1.assembly.fa Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam Location: Pocillopora_meandrina_HIv1___Sc0000002:15749261-15749351 plus PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_1094.ps.pdf Locus Name: Cluster_1094 AGGAAAUUUUUGUCACCUUUACGGCAUCACUUGUUAGCAUUAUUUACUAACGCUAGGAAGGGAUGCCGGGAAGGCGAUAGAACAUUUGACG ...(((((((((((.((((..(((((((.(((.(((((.(((.....))).))))).))).)))))))..)))).))))))).)))).... (-36.20) ..................UUACGGCAUCACUUGUUAGCAUUAU................................................ len:25 al:1 ..................UUACGGCAUCACUUGUUAGCAUUA................................................. len:24 al:2 ..................UUACGGCAUCACUUGUUAGCAUU.................................................. len:23 al:1 ...................UACGGCAUCACUUGUUAGCAUU.................................................. len:22 al:2 ...................UACGGCAUCACUUGUUAG...................................................... len:18 al:1 ....................ACGaCAUCACUUGUUAGCAUUA................................................. len:22 al:1 ....................ACGGCAUCACUUGUUAGCAUUAU................................................ len:23 al:2 ....................ACGGCAUCACUUGUUAGC..................................................... len:18 al:2 ....................ACGGCAUCACUUGUUAGCAUU.................................................. len:21 al:12 ....................ACGGCcUCACUUGUUAGCAUUA................................................. len:22 al:1 ....................ACGGCAUCgCUUGUUAGCAUUA................................................. len:22 al:4 ....................ACGGCAUCACUUGUUAGCA.................................................... len:19 al:1 ....................ACGGCAUCACUUGUUAGCAUc.................................................. len:21 al:1 ....................ACGGCAUCACUUGUUAGCAUUg................................................. len:22 al:1 ....................ACGGCAUCcCUUGUUAGCAUUA................................................. len:22 al:1 ....................ACGGCAUCACUcGUUAGCAUUA................................................. len:22 al:1 ....................ACaGCAUCACUUGUUAGCAUUA................................................. len:22 al:2 ....................ACGGCAUCACUUGUUAGu..................................................... len:18 al:1 ....................ACGGCAUCACUUGUUAGCAUUAUU............................................... len:24 al:1 ....................ACGGCAUCACUUGUUAGCAUUAUa............................................... len:24 al:1 ....................ACGGCAUCACUUGUUAGCAUUA................................................. len:22 al:144 ....................ACGGCgUCACUUGUUAGCAUU.................................................. len:21 al:1 ........................................UAUUUACUAACGCUAGGAAGGGAUGCCGGGA.................... len:31 al:1 ........................................UAUUUACUAACGCUAGGAAGGGAUGCCGGGu.................... len:31 al:1 ...............................................UAACGCUAGGAAGGGAUGCCGGGA.................... len:24 al:5 .................................................ACGCUuGGAAGGGAUGCCGGGA.................... len:22 al:1 .................................................ACGCUAGGAAGGGAUGCCGGGAg................... len:23 al:1 .................................................ACGCUAGGAAGGGAUGCCGGGu.................... len:22 al:29 .................................................ACGCUAGGAAGGGAUGCCG....................... len:19 al:5 .................................................ACGCUAGGAAGGGAUGCuGGGA.................... len:22 al:1 .................................................ACGCUAGGAAGGGAUGCCGGGAAGc................. len:25 al:1 .................................................ACGCUAGGAAGGGAUGCCa....................... len:19 al:1 .................................................AgGCUAGGAAGGGAUGCCGGGA.................... len:22 al:1 .................................................ACGCUAGaAAGGGAUGCCGGGA.................... len:22 al:1 .................................................ACGCUAGGAAGGGAcGCCGGGA.................... len:22 al:1 .................................................ACGCUAGGAAGGGAUGCCGaG..................... len:21 al:1 .................................................ACGCUAGGcAGGGAUGCCGGGA.................... len:22 al:1 .................................................ACGCUAGGAAGGGAUGCCGGGAAu.................. len:24 al:5 .................................................ACGCUAGGAAGGGAUGCCGGu..................... len:21 al:1 .................................................ACGCUAGGAAGGGAUGCCGGa..................... len:21 al:4 .................................................ACGCUAaGAAGGGAUGCCGGGA.................... len:22 al:2 .................................................ACuCUAGGAAGGGAUGCCGGGA.................... len:22 al:2 .................................................ACGCcAGGAAGGGAUGCCGGGA.................... len:22 al:1 .................................................ACGCUAGGAAGGGAUGCCGGGAc................... len:23 al:4 .................................................ACGCUAGGAAGGGAUGCCGGGAu................... len:23 al:65 .................................................ACGCUAGGAAGGGAUGCC........................ len:18 al:7 .................................................gCGCUAGGAAGGGAUGCCGGGA.................... len:22 al:2 .................................................ACGCUAGGAgGGGAUGCCGGGA.................... len:22 al:7 .................................................ACGCUAGGAAaGGAUGCCGGGA.................... len:22 al:2 .................................................ACGCUAGGuAGGGAUGCCGGGA.................... len:22 al:1 .................................................ACGCUAGGAAGGGAUGCu........................ len:18 al:1 .................................................ACGCUgGGAAGGGAUGCCGGGA.................... len:22 al:2 .................................................ACGCUAGGAAGGGAUGCCGGGAAG.................. len:24 al:4 .................................................ACGCUAGGAAGGGAUGCCaGGA.................... len:22 al:1 .................................................ACGCUAGGAAGGGgUGCCGGGA.................... len:22 al:3 .................................................cCGCUAGGAAGGGAUGCCGGGA.................... len:22 al:1 .................................................ACGCUAGGAAGGGAUGCCGGGAAGu................. len:25 al:1 .................................................ACGCUAGGAAGGGAUGCCGGGg.................... len:22 al:2 .................................................uCGCUAGGAAGGGAUGCCGGGA.................... len:22 al:1 .................................................ACGCUAGGAAGGGAUGCCGGG..................... len:21 al:34 .................................................ACGCUAGGAAGGGAUGCCGGGA.................... len:22 al:635 .................................................ACGCUAGGAAGGuAUGCCGGGA.................... len:22 al:1 .................................................ACGCUAGGgAGGGAUGCCGGGA.................... len:22 al:5 ..................................................CGCUAGGAAGGGAUGCCGGGA.................... len:21 al:1 ...................................................GCUAGGAAGGGAUGCCGGGA.................... len:20 al:1 .......................................................................AGGCGAUAGAACAUUUGACu len:20 al:1 .......................................................................AGGCGAUAGAACAUUUGACG len:20 al:2 .......................................................................AGGCGAUAGAACAUUUGgCG len:20 al:1