Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/data/Pocillopora_meandrina_HIv1.assembly.fa Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam Location: Pocillopora_meandrina_HIv1___Sc0000002:10845722-10845816 minus PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_1047.ps.pdf Locus Name: Cluster_1047 AUGUUGGGUACAGAGUUUGUUUGCCGUUAACCCAAAACCUUCAUUUACUAAAGGUGUUGGGCUAGCGACUUACAAAAUCUGUAGGAUGCCAUGCC ..((..((((((((.(((((..(.(((((.(((((.(((((.........))))).))))).))))).)..))))).))))).....)))..)). (-30.90) AUGUUGGGUACAGuGUUUGU........................................................................... len:20 al:3 .UGUUGGGUACAGuGUUUGU........................................................................... len:19 al:2 ...UUGGGUACAGuGUUUGUUUG........................................................................ len:20 al:1 ...............UUUGUUUGCCGUUAACCC.............................................................. len:18 al:1 ...................aUUGCCGUUAACCCAAAACCUUCA.................................................... len:24 al:1 ...................UUUGCCGUUAACCCAAAACCUUC..................................................... len:23 al:1 ...................UUUGCCGUUAACCCAAAACCUU...................................................... len:22 al:1 ...................cUUGCCGUUAACCCAAAACCUUC..................................................... len:23 al:1 ...................cUUGCCGUUAACCCAAAACCUUCA.................................................... len:24 al:3 ....................UUGCCGUUAACCCAAAACCUgCA.................................................... len:23 al:3 ....................UUGCCGUUAACCCAAAACCUUCAaUUA................................................ len:27 al:2 ....................UUGCuGUUAACCCAAAACC........................................................ len:19 al:1 ....................UUGCCGUUgACCCAAAACCUUCA.................................................... len:23 al:10 ....................UUGCCGUUAACCCAAAAaCU....................................................... len:20 al:1 ....................UUGCCGUUAgCCCAAAACCU....................................................... len:20 al:1 ....................UUGCCGUUAACCCAAA........................................................... len:16 al:4 ....................UUGCCGUUAACCCAAgACCUU...................................................... len:21 al:1 ....................UUGCCGUUAACCCAAAACCUUaA.................................................... len:23 al:1 ....................UUGCCGgUAACCCAAAACCUUC..................................................... len:22 al:1 ....................UUGCCGUUAACCCAAAgCCUUCAU................................................... len:24 al:1 ....................UUGCCGUUAACCCAgAACCUU...................................................... len:21 al:1 ....................UUGCCGUUAACCCAAAACCcUCA.................................................... len:23 al:18 ....................UUGgCGUUAACCCAAAACCUUCA.................................................... len:23 al:2 ....................UUGCCGUUAACCCAAAAC......................................................... len:18 al:74 ....................UUGCCGUUAACCCAAAAa......................................................... len:18 al:2 ....................UUGCCGUUAACuCAAAACCUUC..................................................... len:22 al:19 ....................UUGCCGUUAACCCAAAACCUUCAUc.................................................. len:25 al:8 ....................UUGCCGUUAACCCAAAACCUUg..................................................... len:22 al:3 ....................UUGCCGUUAACCCAAAcCCUUCA.................................................... len:23 al:4 ....................UUGCCGUUAACCCAAgAC......................................................... len:18 al:1 ....................UUGCCGUUAACaCAAAACCUUCA.................................................... len:23 al:1 ....................UUGCgGUUAACCCAAAACCUUC..................................................... len:22 al:2 ....................UUGCCGUaAACCCAAAACCUUC..................................................... len:22 al:1 ....................UUGCCGUUAACCCcAAACCUUCA.................................................... len:23 al:2 ....................UUGCCGUUAACgCAAAACCUUC..................................................... len:22 al:1 ....................UUGCCGUUAACCaAAAACCUUC..................................................... len:22 al:3 ....................UUGCCGUUAACCCAA............................................................ len:15 al:1 ....................UUGCCGUUAACCCAAAuCCUUCA.................................................... len:23 al:2 ....................UUGCCGUUAACCCAAAAu......................................................... len:18 al:1 ....................UUGCCGcUAACCCAAAACCUUCA.................................................... len:23 al:13 ....................UUGCCGUUAACCCAAAACCUUa..................................................... len:22 al:63 ....................UUGCCGUUAACCCAAAACCUUCg.................................................... len:23 al:45 ....................UUGCCGUUAACCCAAAACuUUCA.................................................... len:23 al:14 ....................UaGCCGUUAACCCAAAACCUUCA.................................................... len:23 al:1 ....................UUaCCGUUAACCCAAAACCUUCA.................................................... len:23 al:3 ....................UUGCCGUcAACCCAAAACCUUC..................................................... len:22 al:12 ....................UUGCCGUUAAuCCAAAACCUUCA.................................................... len:23 al:3 ....................UUGCCGUcAACCCAAAACCU....................................................... len:20 al:5 ....................UUGCCGUUAACuCAAAACCUUCA.................................................... len:23 al:9 ....................UUGCCGUUAACCCAAAACCUUCAUaU................................................. len:26 al:1 ....................UUaCCGUUAACCCAAAACCUUC..................................................... len:22 al:9 ....................UUGCCGUUAACCCAAAACCUUCAaU.................................................. len:25 al:11 ....................UUGCCGUUAACCCAAAACCUUC..................................................... len:22 al:10377 ....................UUGCCGUUAACCCAAAACCUUCAUgU................................................. len:26 al:1 ....................UUGCCGUUAACCCAAAgCCUUCA.................................................... len:23 al:6 ....................UUGCCGUUAACCCAAAACCcUC..................................................... len:22 al:19 ....................UUuCCGUUAACCCAAAACCUUC..................................................... len:22 al:2 ....................UUaCCGUUAACCCAAAACCU....................................................... len:20 al:2 ....................UUGCCGUcAACCCAAAACCUU...................................................... len:21 al:1 ....................UUGCCGUUAgCCCAAAACCUUCA.................................................... len:23 al:13 ....................aUGCCGUUAACCCAAAACCUUCA.................................................... len:23 al:11 ....................UUGCCGUUAACCCAAAACCUUCAUUU................................................. len:26 al:12 ....................UUGCCGUUAACCCAAAACCUUCAa................................................... len:24 al:25 ....................UUGCCGUUAACCCuAAACCUUC..................................................... len:22 al:1 ....................UUGCaGUUAACCCAAAACCUUC..................................................... len:22 al:2 ....................cUGCCGUUAACCCAAAACCUUCA.................................................... len:23 al:19 ....................UUGCCGUUAACCCcAAACCUUC..................................................... len:22 al:6 ....................UUGCCGUUAACCCAAAgCCU....................................................... len:20 al:1 ....................UUGCCGUUAACCCAAAgCCUUC..................................................... len:22 al:32 ....................UUGCCGUUAACCCAAAACu........................................................ len:19 al:21 ....................aUGCCGUUAACCCAAAACCU....................................................... len:20 al:1 ....................UUGCCGUUAACCCAAAACCUUu..................................................... len:22 al:169 ....................UUGCCGcUAACCCAAAACCUUC..................................................... len:22 al:17 ....................cUGCCGUUAACCCAAAACCUUCAUU.................................................. len:25 al:1 ....................UUGCCGUUAACCCgAAACCU....................................................... len:20 al:1 ....................UUGCCGUUAACCCgAAACCUUCA.................................................... len:23 al:8 ....................UUGCCaUUAACCCAAAACCUUC..................................................... len:22 al:5 ....................UUGCCGUUAACCCAAcACCUUCAUU.................................................. len:25 al:1 ....................UUGCCGUUAACCCgAAACC........................................................ len:19 al:1 ....................UUGCCGUUAACCCAAAACCUUCc.................................................... len:23 al:21 ....................UUGCCGUUAACCCAAAACCUUCAU................................................... len:24 al:80 ....................UUGCuGUUAACCCAAAACCUUCA.................................................... len:23 al:8 ....................UUGCCGUUAACCCAAAACCgU...................................................... len:21 al:8 ....................UUGCCGUUAACCCAAAACCU....................................................... len:20 al:446 ....................UUGCCGUUAACCCAAAACCUUCAUUUACU.............................................. len:29 al:1 ....................UUGCCGUUAgCCCAAAACCUUC..................................................... len:22 al:52 ....................UUGCCGUUAACCCAAAACCgUC..................................................... len:22 al:1 ....................UUGCCGUUAACCCAAAACuUUC..................................................... len:22 al:15 ....................UcGCCGUUAACCCAAAACCUUCA.................................................... len:23 al:6 ....................UUGCCGUUAACCCAAAACCUUuA.................................................... len:23 al:17 ....................UUGCCGUUAACCCAAAACCUUuAU................................................... len:24 al:3 ....................UUGCCGUUAACCCAAAACCUc...................................................... len:21 al:14 ....................UUGCCGUUAcCCCAAAACCUUC..................................................... len:22 al:9 ....................UUGCCGUUAACCCAAgACCUUC..................................................... len:22 al:25 ....................UUGCCGUUAACCCAAAACuUU...................................................... len:21 al:5 ....................UUGCCGUUcACCCAAAACC........................................................ len:19 al:1 ....................UUGCCGUUAACCCAgAACC........................................................ len:19 al:1 ....................UUGCCGUUAACCuAAAACCUUCAU................................................... len:24 al:1 ....................UUGCCGUUAACCCAcAACCUUCA.................................................... len:23 al:1 ....................UUGCCGUUAACCCAAAACCUUCAgU.................................................. len:25 al:4 ....................UUGCCGUUAACCCAAAACCUUCA.................................................... len:23 al:4245 ....................UUGCCGUUAACCCAAAACCUUCgU................................................... len:24 al:2 ....................UUGCCGUUAgCCCAAAACCUUCAU................................................... len:24 al:1 ....................UUGuCGUUAACCCAAAACCUUCA.................................................... len:23 al:10 ....................UUGCCuUUAACCCAAAACCUUCA.................................................... len:23 al:1 ....................UUGuCGUUAACCCAAAACCU....................................................... len:20 al:1 ....................UUGCCGUUAACCCAAAACCUUCuU................................................... len:24 al:2 ....................UUGCuGUUAACCCAAAAC......................................................... len:18 al:1 ....................UUGCCGUUAACCCAAAACaU....................................................... len:20 al:2 ....................UUGCCGUUAACCCAAcACCUUC..................................................... len:22 al:1 ....................UUGCCGUUAACCCAAAACCUUCu.................................................... len:23 al:110 ....................UUGCCGUUAACCCAAAACgUUC..................................................... len:22 al:1 ....................UUGCCGUUAACCCAAAACCUUCAcUU................................................. len:26 al:2 ....................UUGCCGUUcACCCAAAACCUUC..................................................... len:22 al:9 ....................UUGCCGUUAACuCAAAACCU....................................................... len:20 al:2 ....................UUGCCGUUAACCCAAAAuCU....................................................... len:20 al:1 ....................UUGCCGUUAcCCCAAAACCUUCA.................................................... len:23 al:2 ....................UUGCCGUUAACCCAAAACCg....................................................... len:20 al:3 ....................UUGCCGUUAACCCAAgACCUUCA.................................................... len:23 al:12 ....................UUGCCGUUuACCCAAAACCUUC..................................................... len:22 al:1 ....................UUGCuGUUAACCCAAAACCUU...................................................... len:21 al:1 ....................UUGCCGUUAACCCAAuACCUUC..................................................... len:22 al:1 ....................cUGCCGUUAACCCAAAACCUUC..................................................... len:22 al:45 ....................UUGCCGUUAACCCAuAACCUUCA.................................................... len:23 al:2 ....................UUGCCGUUAACCCAAAACuU....................................................... len:20 al:1 ....................UaGCCGUUAACCCAAAACCUUC..................................................... len:22 al:4 ....................UUGCCGUUAACCCAcAACCU....................................................... len:20 al:1 ....................UUGCCGUUAACCCAAAACC........................................................ len:19 al:242 ....................UUGCCGUUcACCCAAAACCUUCA.................................................... len:23 al:1 ....................UUGCCGUUAAuCCAAAACCUUC..................................................... len:22 al:2 ....................UUGuCGUUAACCCAAAACCUUC..................................................... len:22 al:13 ....................UUGCCGUUAACaCAAAACCUUC..................................................... len:22 al:6 ....................UUGCCGUUAACCCAAAcCCUUC..................................................... len:22 al:2 ....................UcGCCGUUAACCCAAAACCUUC..................................................... len:22 al:47 ....................UUGCuGUUAACCCAAAACCUUC..................................................... len:22 al:15 ....................UUGCCGUUAACCCAAAACCaUC..................................................... len:22 al:5 ....................UUGCCGUUAACCCAAuACCUUCA.................................................... len:23 al:2 ....................gUGCCGUUAACCCAAAACCUUC..................................................... len:22 al:2 ....................UUGCCGUcAACCCAAAACC........................................................ len:19 al:1 ....................UUGCCGUUAACCCAAAACCa....................................................... len:20 al:29 ....................UUGCCGUUAACCCAAAACCUa...................................................... len:21 al:5 ....................UUGCCGUUAACCCAAAACCUUCAcU.................................................. len:25 al:1 ....................aUGCCGUUAACCCAAAACCUUC..................................................... len:22 al:14 ....................UUGCCGUUAACCCAAAACCUUCAUU.................................................. len:25 al:96 ....................UUGCCGUUAACCCAAgACCU....................................................... len:20 al:2 ....................UUGCCGUUAACCCAAAAuCUUC..................................................... len:22 al:5 ....................UUGCCGUUAACCCAAAACCaU...................................................... len:21 al:2 ....................UUGCCGUUgACCCAAAACCUUC..................................................... len:22 al:9 ....................UUGCCGUUAACCCAgAACCUUC..................................................... len:22 al:21 ....................UUuCCGUUAACCCAAAACCUUCA.................................................... len:23 al:1 ....................UUGCCGUUAACgCAAAACCUUCA.................................................... len:23 al:2 ....................UUGCCGUcAACCCAAAACCUUCAU................................................... len:24 al:1 ....................UUGCCGUUAACuCAAAACCUUCAU................................................... len:24 al:2 ....................UUGCCGUUAACCuAAAACCUUC..................................................... len:22 al:4 ....................UUGCCGUcAACCCAAAACCUUCAUU.................................................. len:25 al:1 ....................UUGCCGUUAACCCAAAACCUgC..................................................... len:22 al:3 ....................UUGCCGUUAACCCAgAACCUUCA.................................................... len:23 al:7 ....................UUGCCGUUAACCCAAuACCUUCAUU.................................................. len:25 al:1 ....................UUGCCGUUAACCCAAAACCUUCAUa.................................................. len:25 al:11 ....................UUGCCGUUAACCuAAAACCUUCA.................................................... len:23 al:1 ....................UUGCCGUUAACCCAAAACCUUCAUUa................................................. len:26 al:2 ....................UUGCCGUUAAaCCAAAACCUUC..................................................... len:22 al:1 ....................UUGCCGUcAACCCAAAACCUUCA.................................................... len:23 al:2 ....................UUGCCGUUAACCCAAAACCUUCAUUc................................................. len:26 al:1 ....................UUGCCGUUAACCCAAAACCUUCAUUUu................................................ len:27 al:1 ....................UUGCCGUUgACCCAAAAC......................................................... len:18 al:1 ....................UUGCCGUUAACCCAAAACCc....................................................... len:20 al:39 ....................UUGCCGUUAACCCAAAA.......................................................... len:17 al:1 ....................UUGCCGUUAACCCAAcACCUUCA.................................................... len:23 al:1 ....................UUGCCGUUAACCaAAAACCUUCA.................................................... len:23 al:1 ....................UUGCCGUUcACCCAAAACCUUCAUU.................................................. len:25 al:1 ....................UUGCCaUUAACCCAAAACCUUCA.................................................... len:23 al:2 ....................UUGCCGUUAACCCAAAACCUUCAc................................................... len:24 al:5 ....................UUGCCGUUAACCCAAAACa........................................................ len:19 al:5 ....................UUGCCGUUAACCCAAAACaUUCA.................................................... len:23 al:1 ....................UUGCCGUUAACCCAAAu.......................................................... len:17 al:1 ....................UUGCCGUUAACCCAAAACCUU...................................................... len:21 al:235 ....................UUGCCGUUAACCCAAAACCUg...................................................... len:21 al:3 ....................aUGCCGUUAACCCAAAACCUU...................................................... len:21 al:1 ....................UUGCCGUUAACCCgAAACCUUC..................................................... len:22 al:30 ....................UUaCCGUUAACCCAAAACC........................................................ len:19 al:1 ....................UUGCCGUUAACCCAcAACCUUC..................................................... len:22 al:6 ....................UUGCCGUUAACCCAAAACCUaC..................................................... len:22 al:13 ....................UUGCCGUUAACCCAAAACCUcCA.................................................... len:23 al:23 ....................UUGaCGUUAACCCAAAACCUUC..................................................... len:22 al:1 ....................UcGCCGUUAACCCAAAACC........................................................ len:19 al:2 ....................UUGCCGUUAAaCCAAAACCUUCA.................................................... len:23 al:1 ....................UUGCCGUUAACCCAAAACCUcC..................................................... len:22 al:33 ....................UUGCCGUUAACCCAAAACCUUCAUUUACUA............................................. len:30 al:2 ....................UUGCCGUUAuCCCAAAACCUUCA.................................................... len:23 al:1 ....................UUGCCGUUAACCCAAAACCUUCAaUU................................................. len:26 al:2 ....................UUGCCGUUAACCCAAAACCUUCuUU.................................................. len:25 al:1 ....................cUGCCGUUAACCCAAAACCU....................................................... len:20 al:4 .....................UGCCGUUAACCCAAAACCUUCAUc.................................................. len:24 al:2 .....................UGCCGUcAACCCAAAACCUUCA.................................................... len:22 al:1 .....................UGCCGUUAACCCAAAACC........................................................ len:18 al:19 .....................UGCCGUcAACCCAAAACCUUC..................................................... len:21 al:1 .....................UGCCGUUAACCCAAAACCUU...................................................... len:20 al:21 .....................UGCCGUUAACCCAAAAC......................................................... len:17 al:1 .....................UGCCGUUgACCCAAAACCU....................................................... len:19 al:2 .....................UGCCGUUAACCCAAAACu........................................................ len:18 al:3 .....................UGCCGUUcACCCAAAACCUUCA.................................................... len:22 al:1 .....................UGCCGUUAACCCAAAACCUcC..................................................... len:21 al:2 .....................UGCCGUUAACCCAAcACCUUCAUU.................................................. len:24 al:1 .....................UGCCGUUAACCCAgAACCUUCA.................................................... len:22 al:2 .....................UGCCGUUAACCCAAgACCUUCA.................................................... len:22 al:2 .....................UGCCGUUAACCCAAAACCUUu..................................................... len:21 al:10 .....................UGCCGUUAACCCAAAACCUUCAUU.................................................. len:24 al:9 .....................UGCCGUUAACCCAcAACCUUC..................................................... len:21 al:1 .....................UGCCGUUAACCCAAcACCUUCA.................................................... len:22 al:2 .....................UGCCGUUAACCuAAAACCUUCA.................................................... len:22 al:1 .....................UGCCGUUgACCCAAAACCUUC..................................................... len:21 al:4 .....................UGCCGUUAACCCAAAACCUUC..................................................... len:21 al:497 .....................UGCCGUUAACCCAAAACCUc...................................................... len:20 al:3 .....................UGCCaUUAACCCAAAACCUUC..................................................... len:21 al:1 .....................UGCCGUUAgCCCAAAACCUUCA.................................................... len:22 al:3 .....................UGCCGUUAACCCAAAACCcUCA.................................................... len:22 al:2 .....................UGCCGUUAACCCAAAACuUUC..................................................... len:21 al:2 .....................aGCCGUUAACCCAAAACCUUC..................................................... len:21 al:2 .....................UGCCGUUAACCCAAAgCCUUCA.................................................... len:22 al:1 .....................UGCCGUUgACCCAAAACCUUCA.................................................... len:22 al:1 .....................UGCCGUUAACCCAAAACCUUCu.................................................... len:22 al:7 .....................UaCCGUUAACCCAAAACCUU...................................................... len:20 al:1 .....................UGCCGUUAACCCAAAACaU....................................................... len:19 al:1 .....................UaCCGUUAACCCAAAACCUUC..................................................... len:21 al:2 .....................UGCCGUUAACCCAgAACCUUC..................................................... len:21 al:3 .....................UGCCGUUAACCCAAAACCU....................................................... len:19 al:27 .....................UGCCGUUAACuCAAAACCUUCA.................................................... len:22 al:1 .....................UGCCGUUAACCCAAAACCUa...................................................... len:20 al:2 .....................UGCCGUUAACCCAAAACCUcCA.................................................... len:22 al:1 .....................UGuCGUUAACCCAAAACCUUC..................................................... len:21 al:3 .....................UGCCGUUAACCCAAAACCUUCAU................................................... len:23 al:10 .....................UGCCGUUAAuCCAAAACCUUC..................................................... len:21 al:1 .....................UGCCGcUAACCCAAAACCUUC..................................................... len:21 al:1 .....................UGCCGUUAgCCCAAAACCUUC..................................................... len:21 al:1 .....................UGCCGUUAACCCAAAACCUaC..................................................... len:21 al:2 .....................UGCCGUUAACCCAAAA.......................................................... len:16 al:1 .....................UGCCGUUAACCCAAAgCCUUC..................................................... len:21 al:1 .....................UGCCGUUAACCCAAgACCUUC..................................................... len:21 al:3 .....................UGCCGUUAACCCAAgACCUU...................................................... len:20 al:1 .....................cGCCGUUAACCCAAAACCUUC..................................................... len:21 al:1 .....................UGCCGUUAACCCAAAACCUUa..................................................... len:21 al:2 .....................UGCCGUUAACCCAAAACCUUCAUUUAa............................................... len:27 al:1 .....................UGCCGUUAACCCAAAACCUUCA.................................................... len:22 al:278 ......................GCCGUUAACCCAAgACCUUC..................................................... len:20 al:1 ......................GCCGUUAACCCAAAACCc....................................................... len:18 al:1 ......................GCCGUUAACCCAAAACCUUCu.................................................... len:21 al:2 ......................GCCGUUAACCCAAAACCUUCA.................................................... len:21 al:18 ......................GCCGUUAACCCAAAACCUUC..................................................... len:20 al:20 ......................GCCGUUAACCCAAAACCU....................................................... len:18 al:4 .......................CCGUUAACCCAAAACCUUC..................................................... len:19 al:1 ........................CGUUAACCCAAAACCUUCAUUUACUA............................................. len:26 al:2 .........................................CAUUUACUAAAGGUGUUGGGCUAGCGACUUA....................... len:31 al:2 .........................................CAUUUACUAAAGGUGUUGGGCUAGCGACUU........................ len:30 al:1 ..........................................AUUUACUAAAGGUcUUGGGCUAGCGACUUAC...................... len:31 al:2 ...........................................UUUACUAAAGGUGUUGGGCUAGCGACU......................... len:27 al:4 ...........................................UUUACUAAAGGUGUUGGGCUAGCGACUUu....................... len:29 al:16 ...........................................UUUACUAAAGGUGUUGGGCUAGCGACUUACu..................... len:31 al:6 ...........................................UUUACUAAAGGUGUUGGGCUAGCGACgU........................ len:28 al:3 ...........................................UUUACUAAAGGUGUUGGGCUAGCGACUUAC...................... len:30 al:50 ...........................................aUUACUAAAGGUGUUGGGCUAGCGACU......................... len:27 al:1 ...........................................UUUACUAAAGGUGUUGGGCUAGCGACUUA....................... len:29 al:39 ...........................................UUUACUAAAGGUcUUGGGCUAGCGACUUA....................... len:29 al:26 ...........................................UUUACUAAAGGUcUUGGGCUAGCGACUUAC...................... len:30 al:8 ...........................................UUUACUAAAGGUGUcGGGCUAGCGACUUA....................... len:29 al:1 ...........................................UUUACUAAAGGUGUUGGGCUAGCGACUUAu...................... len:30 al:2 ...........................................UUUACUAAAGGUGUUGGGCUAGCGACUUc....................... len:29 al:1 ...........................................UUUACUAAAGGUcUUGGGCUAGCGACUUACA..................... len:31 al:2 ...........................................UUUACUAAAGGUGUUGGGCUAGCGACgUA....................... len:29 al:39 ...........................................UUUACUAAAGGUGUUGGGCUAGCGACUU........................ len:28 al:5 ...........................................UUUACUAAAGGUGUUGGGCUAGCGACgUACA..................... len:31 al:1 ...........................................UUUACUAAAGGUGUUGGGCUAGCGA........................... len:25 al:2 ...........................................UUUACUAAAGGUGUUGGGCUAGCGACgUAC...................... len:30 al:7 ...........................................UUUACUAAAGGUGUUGGGCUAGCGACUUACA..................... len:31 al:5 ...........................................UUUACUAAAGGUGUUGGGCUAGCG............................ len:24 al:3 ............................................UUACUAAAGGUcUUGGGCUAGCGACUUA....................... len:28 al:2 ............................................UUACUAAAGGUGUUGGGCUAGCGACUUAC...................... len:29 al:1 ............................................UUACUAAAGGUGUUGGGCUAGCGACcUA....................... len:28 al:1 ............................................UUACUAAAGGUGUUGGGCUAGCGACgUA....................... len:28 al:1 ............................................UUACUAAAGGUGUUGGGCUAGCGACUUA....................... len:28 al:1 ............................................UUACUAAAGGUGUUGGGCUAGCGACUUACu..................... len:30 al:2 ............................................UUACUAAAGGUGUUGGGCUAGCGACUU........................ len:27 al:1 .............................................UACUAAAGGUGUUGGGCUAGCGACgUA....................... len:27 al:4 .............................................UACUAAAGGUGUUGGGCUAGCGACUUAC...................... len:28 al:2 .............................................UACUAAAGGUGUUGGGCUAGCGACUUACu..................... len:29 al:1 .............................................UACUAAAGGUGUUGGGCUAGCGACUUA....................... len:27 al:7 .............................................UACUAAAGGUcUUGGGCUAGCGACUUA....................... len:27 al:5 .............................................UACUAAAGGUGUUGGGCUAGCGACUUAu...................... len:28 al:1 .............................................UACUAAAGGUGUUGGGCUAGCGACUUACA..................... len:29 al:1 .............................................UACUAAAGGUGUUGGGCUAGCGACUUu....................... len:27 al:2 .............................................UACUAAAGGUGUUGGGCUAGu............................. len:21 al:1 ..............................................ACUAAAGGUGUUGGGCUAGCGACgUA....................... len:26 al:2 ..............................................ACUAAAGGUGUUGGGCUAGCGACUUAC...................... len:27 al:1 ..............................................ACUAAAGGUGUUGGGCUAGu............................. len:20 al:2 ..............................................ACUAAAGGUGUUGGGCUAGCGACgU........................ len:25 al:1 ..............................................ACUAAAGGUGUUGGGCUAGCGACgUACA..................... len:28 al:2 ..............................................ACUAAAGGUGUUGGGCUAGCGACUUu....................... len:26 al:3 ..............................................ACUAAAGGUGUUGGGCUAGCGACUU........................ len:25 al:2 ...............................................CUAAAGGUGUUGGGCUAGCGACUUACA..................... len:27 al:1 ...............................................CUAAAGGUGUUGGGCUAGCGACcU........................ len:24 al:1 ...............................................CUAAAGGUGUUGGGCUAGCGACgUA....................... len:25 al:2 ...............................................CUAAAGGUGUUGGGCUAGCGACUUA....................... len:25 al:10 ...............................................CUAAAGGUGUUGGGCUAGCGACUUu....................... len:25 al:6 ...............................................CUAAAGGUGUUGGGCUAuCGACUUACA..................... len:27 al:1 ...............................................CUAAAGGUcUUGGGCUAGCGACUUA....................... len:25 al:1 ...............................................CUAAAGGUGUUGGGCUAGCGACUUACu..................... len:27 al:1 ................................................UAAAGGUGUUGGGCUAGCGACUU........................ len:23 al:7 ................................................UAAAGGUGUUGGGCUAGC............................. len:18 al:4 ................................................UAAAGGUGUUGGGCUAGCGACgUAC...................... len:25 al:4 ................................................UAAAGGUcUUGGGCUAGCGACUU........................ len:23 al:1 ................................................UAAAGGUGUUGGGCUAGCGACUUu....................... len:24 al:4 ................................................UAAAGGUGUUGGGCUAGCGACgUA....................... len:24 al:14 ................................................UAAAGGUGUUGGGCUAGCGACUUAu...................... len:25 al:2 ................................................UAAAGGUGUUGGGCUAGCGACgU........................ len:23 al:52 ................................................UAAAGGUcUUGGGCUAGCGA........................... len:20 al:1 ................................................UAAAGGUGUUGGGCUAGCGACU......................... len:22 al:2 ................................................UAAAGGUGUUGGGCUAGCGACUUACu..................... len:26 al:14 ................................................UAAAGGUGUUGGGCUAGCGACUUAC...................... len:25 al:3 ................................................UAAAGGUGUUGGGCUAGCGACUUA....................... len:24 al:10 .................................................AAAGGUGUUGGGCUAGCGACUUAC...................... len:24 al:4 .................................................AAAGGUGUUGGGCUAGCGACUUACc..................... len:25 al:1 .................................................AAAGGUGUUGGGCUgGCGACUUA....................... len:23 al:1 .................................................AAAGGUGUUGGGCUAGCGACUU........................ len:22 al:3 .................................................AAAGGUcUUGGGCUAGCGACUUA....................... len:23 al:3 .................................................AAAGGUGUUGGGCUAGCGACgUA....................... len:23 al:26 .................................................AAAGGUGUUGGGCUAGCGACg......................... len:21 al:1 .................................................AAAGGUGUUGGGCUAGCGACU......................... len:21 al:1 .................................................AAAGGUGUUGGGCUAGCGACUUu....................... len:23 al:3 .................................................AAAGGUGUUGGGCUAGC............................. len:17 al:1 .................................................AAAGGUGUUGGGCUAGCGACUUACu..................... len:25 al:3 .................................................AAAGGUGUUGGGCUAGCGACUUA....................... len:23 al:28 .................................................AAAGGUGUUGGGCUAGCaACUUA....................... len:23 al:2 .................................................AAAGGUGUUGGGCUAGCGAC.......................... len:20 al:1 .................................................AAAGGUGUUGGGCUAGCGACUUAu...................... len:24 al:3 .................................................AAAGGUGUUGGGCUAGCGACgU........................ len:22 al:22 ..................................................cAGGUGUUGGGCUAGCGACUUA....................... len:22 al:1 ..................................................AAGGUGUUGGGCUAGCGACaU........................ len:21 al:3 ..................................................AAaGUGUUGGGCUAGCGACUUAC...................... len:23 al:1 ..................................................AAGGUGcUGGGCUAGCGACUUACA..................... len:24 al:2 ..................................................AAGGUGUUGGGCUAGCGACUU........................ len:21 al:16 ..................................................AAGGUGUUGGGCUAGCGACg......................... len:20 al:1 ..................................................AAGGUcUUGGGCUAGCGACU......................... len:20 al:2 ..................................................AAGGUGUUGGGCUAGCGACUUACc..................... len:24 al:6 ..................................................AAGGcGUUGGGCUAGCGACUUA....................... len:22 al:1 ..................................................AAGGUGUUGGGCUAGCGgCUUAC...................... len:23 al:1 ..................................................AAGGUGUUGGGCUAGCGACgUAC...................... len:23 al:16 ..................................................AAGGUGUUGGGCUAGCGACUUAC...................... len:23 al:167 ..................................................AAGGUGUUGGGCUAGCGACUUACAu.................... len:25 al:1 ..................................................AAGGUGUUGGGCUAGCGAC.......................... len:19 al:2 ..................................................AAGGUGUUGGGCUAGCGACUUACA..................... len:24 al:44 ..................................................AAGGUGUUGGGuUAGCGACUUAC...................... len:23 al:1 ..................................................AAGGUGUUGGGCUAGCGACUUu....................... len:22 al:9 ..................................................AAGGUGUcGGGCUAGCGACUUACA..................... len:24 al:1 ..................................................AAGGUGUUGGGCcAGCGACUUAC...................... len:23 al:1 ..................................................AAGGUcUUGGGCUAGCGACUU........................ len:21 al:9 ..................................................AAGGUGUUGGGCUAGCGACUUA....................... len:22 al:42 ..................................................AAGGUGUUGGGCUAGCGACUUACu..................... len:24 al:131 ..................................................AAGGUGUUGGGCUAGCGACUUACuA.................... len:25 al:1 ..................................................AAGGUGUUGGGCUAGCGA........................... len:18 al:1 ..................................................AAGGUGUUGGGCUAGCGACUUuC...................... len:23 al:1 ..................................................AAGGUGUUGGGCUAGCGACgU........................ len:21 al:57 ..................................................AAGGUcUUGGGCUAGCGACUUACA..................... len:24 al:20 ..................................................AAGGUGUUGGGCUAGCGACaUAC...................... len:23 al:1 ..................................................AAGGUcUUGGGCUAGCGACUUA....................... len:22 al:35 ..................................................AAGGUGUUGaGCUAGCGACUUACA..................... len:24 al:1 ..................................................AAGGUGUUGGGCUAGCGACU......................... len:20 al:10 ..................................................AAGGgGUUGGGCUAGCGACUUAC...................... len:23 al:1 ..................................................AAGGUGUUGGGCUAGCGACUUgC...................... len:23 al:1 ..................................................AAGGUGUUGGGCUAGCGACgUA....................... len:22 al:51 ..................................................AAGGUGUUGGGCUAGCGACUUAuA..................... len:24 al:1 ..................................................AAGGUGUUGGGCUAGCGACUUACAuA................... len:26 al:5 ..................................................AAGGUGUUGGGCUAGCGACUUACg..................... len:24 al:2 ..................................................AAGGUGUUGGGCUAGCGAuU......................... len:20 al:1 ..................................................AAGGUGUUGGGCUAGCGACUUAu...................... len:23 al:7 ..................................................AAGGUcUUGGGCUAGCGACUUAC...................... len:23 al:16 ...................................................AGGUGUUGGuCUAGCGACUUACA..................... len:23 al:1 ...................................................AGGUGUUGGGCUAGCGACgUAC...................... len:22 al:31 ...................................................AGGUGUUGGGCUAGCGACUUACA..................... len:23 al:109 ...................................................AGGUGUUGGGCUAGCGACcUAC...................... len:22 al:4 ...................................................AGGUGUUGGGCUAGCGACgU........................ len:20 al:4 ...................................................AGGUGUUGGGCUAGCGACUUAC...................... len:22 al:444 ...................................................AGGUGUUGGGCUAGCGACgUA....................... len:21 al:9 ...................................................AGGUGUUGGGCUgGCGACUUAC...................... len:22 al:2 ...................................................AaGUGUUGGGCUAGCGACUUAC...................... len:22 al:1 ...................................................AGGUGUUGGGCUAGCGACUUACg..................... len:23 al:2 ...................................................AGGUGUUGGGCcAGCGACUUAC...................... len:22 al:2 ...................................................AGGUcUUGGGCUAGCGACUUACA..................... len:23 al:26 ...................................................AGGUGUUGGGCUAGCGACc......................... len:19 al:1 ...................................................AGGUGUcGGGCUAGCGACUUAC...................... len:22 al:1 ...................................................AGGUGUUGGGCUAGCGACU......................... len:19 al:10 ...................................................AGGUGUUGGGCUAGCGACcUACA..................... len:23 al:1 ...................................................AGGUGUUGGGCcAGCGACUUACA..................... len:23 al:1 ...................................................AGGUGcUGGGCUAGCGACUUAC...................... len:22 al:3 ...................................................AGGUGUUGGGCUAGCGACgUACA..................... len:23 al:10 ...................................................AGGUGUUGGGCUAGCGACUUACu..................... len:23 al:184 ...................................................AGGUGUUGGGCUAGCGACUUACc..................... len:23 al:23 ...................................................AGGUcUUGGGCUAGCGACU......................... len:19 al:1 ...................................................AGGUGUUGGGCUAGCGACcUA....................... len:21 al:1 ...................................................cGGUGUUGGGCUAGCGACUUAC...................... len:22 al:1 ...................................................AGGUGUUGGGCUAGCGACUUu....................... len:21 al:4 ...................................................gGGUGUUGGGCUAGCGACUUAC...................... len:22 al:3 ...................................................AGGUGUUGGGCUAuCGACUUAC...................... len:22 al:2 ...................................................AGGcGUUGGGCUAGCGACUUACA..................... len:23 al:1 ...................................................AGGUcUUGGGCUAGCGACUUA....................... len:21 al:5 ...................................................AGGUcUUGGGCUAGCGACUU........................ len:20 al:3 ...................................................AGGUGUUGGGCUAGCGACUUAa...................... len:22 al:2 ...................................................AGGUGUUGGGCUcGCGACUUACA..................... len:23 al:1 ...................................................AGGUGUUGGGCUAGCGACUUACAuA................... len:25 al:5 ...................................................AGGUGUUGGGCUAGCGACUUAu...................... len:22 al:8 ...................................................AGGUGUUGGGCUAGCGACUUA....................... len:21 al:15 ...................................................AGGUcUUGGGCUAGCGACUUAC...................... len:22 al:20 ...................................................uGGUGUUGGGCUAGCGACUUAC...................... len:22 al:2 ...................................................AGGUGUUGGGCUAGCGACUUACAAAAUCU............... len:29 al:1 ...................................................AGGUGUUGGGCUAGCGACUU........................ len:20 al:6 ....................................................GGUGUUGGGCUAGCGACUUAC...................... len:21 al:3 ....................................................GGUGUUGGGCUAGCGACU......................... len:18 al:1 ....................................................GGUGUUGGGCUAGCGACUUACA..................... len:22 al:4 ....................................................GGUGUUGGGCUAGCGACUUg....................... len:20 al:1 ....................................................GGUGUUGGGCUAGCGACgUA....................... len:20 al:1 ....................................................GGUGUUGGGCUAGCGACUUACc..................... len:22 al:1 ....................................................GGUGUUGGGCUAGCGACUUACAAA................... len:24 al:1 ....................................................GGUGUUGGGCUAGCGACUUACu..................... len:22 al:7 ....................................................GGUGUUGGGCUAGCGACgU........................ len:19 al:2 .....................................................GUGUUGGGCUAGCGACUUACu..................... len:21 al:3 .....................................................GUGUUGGGCUAGCGACUUACuAA................... len:23 al:1 .....................................................GUGUUGGGCUAGCGACUUAC...................... len:20 al:7 .....................................................GUGUUGGGCUAGCGACgU........................ len:18 al:1 ......................................................UGUUGGGCUAGCGACUUAC...................... len:19 al:3 ......................................................UGUUGGGCUAGCGACUUACA..................... len:20 al:3 ......................................................UGUUGGGCUAGCGACUUACu..................... len:20 al:3 ........................................................UUGGGCUAGCGACUUACu..................... len:18 al:3 ........................................................................CAAAAUCUGUAGGAUGCCAUGCC len:23 al:4 ........................................................................CAAAAUCUGUAGGAUGCCAUGC. len:22 al:2 ........................................................................CAAAAUCUGUAGGAUGCCA.... len:19 al:1 .........................................................................AAAAUCUGUAGGAUGCCAU... len:19 al:1 .........................................................................AAAAUCUGUAGGAUGCCAUGCa len:22 al:1 .........................................................................AAAAUCUGUAGGAUGCCAUGC. len:21 al:1 .........................................................................AAAAUCUGUAGGAUGCCAUGCC len:22 al:9