Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_1128:125526-125618 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_9149.ps.pdf
Locus Name: Cluster_9149
UGUAGACUGAAAGAAAGUAAUCGUCCAAAUUGACACAUGGUUUUUAAUACCAUGUGUUAAUUUGGACGAUUACUUUUUUUUAAAAAACCAGUU
.......((((((((((((((((((((((((((((((((((.......))))))))))))))))))))))))))))))))))........... (-49.00)
.GUAGACUGAAgGAAAGUAAU........................................................................ len:20 al:1
.GUAGACUGAAAGAAAGUAAU........................................................................ len:20 al:12
..UAGACUGAAAGAAAGUAAU........................................................................ len:19 al:1
........GAAAGAAAGUAAUCGUCCA.................................................................. len:19 al:1
.................UAAUCGUCCAAAUUGACACAUGG..................................................... len:23 al:1
.................UAAUCGUCCAAAUUGACACAU....................................................... len:21 al:16
.................UAAUCGUCCAAAUUGACACAUG...................................................... len:22 al:1
.................UAAUCGUCCAAAUUGACACAc....................................................... len:21 al:4
.................UAAUCGUCCAAAUaGACACAU....................................................... len:21 al:1
.................UAAUCGUCCAAAUUGACACAUGc..................................................... len:23 al:1
...................AUCGUCCAAAUUGACACAUGG..................................................... len:21 al:17
...................AUCGUCCAAAUUGACACAUGGU.................................................... len:22 al:14
...................AaCGUCCAAAUUGACACAUGG..................................................... len:21 al:1
...................AUCGUCCAAAUUGACACAUGGUU................................................... len:23 al:7
...................AUCGUCCAAAUUGACACAUGa..................................................... len:21 al:2
...................AUCGUCCAAAUUGACACAUGGUc................................................... len:23 al:1
....................aCGUCCAAAUUGACACAU....................................................... len:18 al:1
....................UCGUCCAgAUUGACACAUGGUU................................................... len:22 al:1
....................UCGUCCAAAUUGACACAUGGUUc.................................................. len:23 al:1
....................UCGUCCAgAUUGACACAUGG..................................................... len:20 al:2
....................UCGUCCAAAUUGACACAUGG..................................................... len:20 al:48
....................UuGUCCAAAUUGACACAUGGUU................................................... len:22 al:3
....................UCGUCCAAAUUGACACAUGGgU................................................... len:22 al:1
....................UCGUCCAAAUUGACACAUGGU.................................................... len:21 al:2
....................UCGUCCAAAUUGACACAUG...................................................... len:19 al:14
....................UCGUCCAAAUUGACACAUa...................................................... len:19 al:1
....................UCGUCCAAAUUGACACAc....................................................... len:18 al:1
....................UCGUCCAAAUUGACACAUGa..................................................... len:20 al:9
....................UCGUCCAAAUUGACACAcGG..................................................... len:20 al:1
....................UCGUCuAAAUUGACACAUGGUUUUU................................................ len:25 al:2
....................cCGUCCAAAUUGACACAUGGUU................................................... len:22 al:2
....................UCGUCCAAAUUGACACAUGc..................................................... len:20 al:1
....................UCGUCCAAAUUGACACAUGGUgU.................................................. len:23 al:1
....................UCGUCCAAAUUGACACAUGGUU................................................... len:22 al:70
....................UCGUCCAAAUUGACAuAU....................................................... len:18 al:1
....................UCGUCCAAAUUGACACAUGGUa................................................... len:22 al:2
....................UCGUCCAAAUUGACACAUGGUUU.................................................. len:23 al:17
....................UCGUCCAAAUUGACACAcGGUU................................................... len:22 al:1
....................UCGUCCgAAUUGACACAUGGUUU.................................................. len:23 al:1
....................UCGUCCAAAUUGACACAUGGUUUUU................................................ len:25 al:4
....................UCGUCCAAAUUGAuACAU....................................................... len:18 al:1
....................UCGUCCAAAUUGACACgUGGUU................................................... len:22 al:1
....................UCGUCCAAAUUGACACAU....................................................... len:18 al:12
....................UCGUCCAAAUUGACACAUGGUc................................................... len:22 al:11
....................UCGUCCAAAUUGACACAUGu..................................................... len:20 al:2
.....................CGUCCAAAUUGACACAUGGU.................................................... len:20 al:7
.....................CGUCCAAAUUGACACAUGG..................................................... len:19 al:10
.....................CGUCCAAAUUGACACAUGGUUU.................................................. len:22 al:1
.....................CGUCCAAAUUGACACAUGGUU................................................... len:21 al:6
.....................CGUCCAAAUUGACACgUGG..................................................... len:19 al:1
.....................CGUCCAAAUUGACACAUGGUa................................................... len:21 al:1
......................GUCCAAAUUGACACAUGG..................................................... len:18 al:4
.......................UCCAAAUUGACACAUGGUU................................................... len:19 al:2
.................................................CCAUGUGUUAAUcUGGACGAUU...................... len:22 al:1
.................................................CCAUGUGUUAAUUUGGACGAUUu..................... len:23 al:1
.................................................CCAUGUGUUAAUUUGGACGAUU...................... len:22 al:68
.................................................CCAcGUGUUAAUUUGGACGAUU...................... len:22 al:1
.................................................CCAUGUGUUAAUUUGGACGAU....................... len:21 al:4
.................................................CCAUGUGUUAAUUUGGACGAc....................... len:21 al:1
.................................................CCAUGcGUUAAUUUGGACGAUU...................... len:22 al:1
.................................................CCAUGUGUUAAUUUGGACGAUc...................... len:22 al:2
.................................................CCAUGUGUUAAUUUGGACGAUa...................... len:22 al:1
..................................................CAUGUGUUAAUUUGGACGAUUAu.................... len:23 al:4
..................................................CAUGUGUUgAUUUGGACGAUU...................... len:21 al:8
..................................................CAUGUGUUAAUUUGGACGAcU...................... len:21 al:9
..................................................CAUGUGUUAAUUUGGACGuU....................... len:20 al:5
..................................................CAUGUGUUAAUUcGGACGAUU...................... len:21 al:7
..................................................CAUGUGUUAAUUUGGACG......................... len:18 al:107
..................................................uAUGUGUUAAUUUGGACGAUU...................... len:21 al:6
..................................................CAUGUGUUAAUUUGGACa......................... len:18 al:25
..................................................CAUGUGUUAAUUUGGACGgUU...................... len:21 al:3
..................................................gAUGUGUUAAUUUGGACGAUU...................... len:21 al:1
..................................................CAUGUGUUAAUcUGGACGAU....................... len:20 al:1
..................................................CAUGUGUUAAUUUGGAC.......................... len:17 al:1
..................................................CAUGUGUUAAUUUGGACGAUa...................... len:21 al:23
..................................................CAUGUaUUAAUUUGGACGAU....................... len:20 al:2
..................................................CAUGUGUUAgUUUGGACGAUU...................... len:21 al:4
..................................................CAUGUGUUAAUUUGGAuGAU....................... len:20 al:2
..................................................CAUGUGcUAAUUUGGACGAUU...................... len:21 al:7
..................................................CcUGUGUUAAUUUGGACGAUU...................... len:21 al:1
..................................................aAUGUGUUAAUUUGGACGAUU...................... len:21 al:12
..................................................CAUGUGUUAAUUUGGACaAUU...................... len:21 al:2
..................................................aAUGUGUUAAUUUGGACG......................... len:18 al:1
..................................................CAUGUGUUAAUUUGGAuGAUU...................... len:21 al:4
..................................................CAcGUGUUAAUUUGGACGAUU...................... len:21 al:12
..................................................CAUGUGUUAAUUUGGgCGAUU...................... len:21 al:13
..................................................CAUGcGUUAAUUUGGACGAUU...................... len:21 al:8
..................................................CAUGcGUUAAUUUGGACGAU....................... len:20 al:5
..................................................CgUGUGUUAAUUUGGACGAUU...................... len:21 al:12
..................................................CAUGUGUUAAUUUGGACGAc....................... len:20 al:75
..................................................CAaGUGUUAAUUUGGACGAUU...................... len:21 al:1
..................................................CAUGUGcUAAUUUGGACGAU....................... len:20 al:4
..................................................CAUGUGUUAAUUUGG............................ len:15 al:1
..................................................CuUGUGUUAAUUUGGACGAUU...................... len:21 al:2
..................................................CAUGUGUUcAUUUGGACGAUU...................... len:21 al:1
..................................................CAUGUGUUAcUUUGGACGAU....................... len:20 al:1
..................................................CAUGUGUUAAUUUGGACGAgU...................... len:21 al:13
..................................................CAUGUGUUAAUUUaGACGAUU...................... len:21 al:4
..................................................CAUGUGUUAAcUUGGACGAUU...................... len:21 al:3
..................................................CAUGUGUUAAUUUGGACu......................... len:18 al:2
..................................................CAUGUGUUAAUUUGGACGA........................ len:19 al:22
..................................................CAUaUGUUAAUUUGGACGAU....................... len:20 al:1
..................................................CAUGUGUUAAcUUGGACGAU....................... len:20 al:1
..................................................CAUGUGUUAAUcUGGACGAUU...................... len:21 al:2
..................................................CAUGUGUUAAUUUGGACGAa....................... len:20 al:1
..................................................CAUGaGUUAAUUUGGACGAUU...................... len:21 al:1
..................................................CAUGUGUUAAUUUGGACGAUUu..................... len:22 al:55
..................................................CAUGUGUUAAUUUGGACGAUUc..................... len:22 al:2
..................................................CAUGUGUUAAUUcGGACGAU....................... len:20 al:4
..................................................CAUGUGUUAAUUUGGACGAg....................... len:20 al:4
..................................................CAUGUGUUAAUUUGGACGAUU...................... len:21 al:2534
..................................................CAUGUGUUAAUUUGGACGAUUuC.................... len:23 al:4
..................................................CAUGUGUUAAUUUGGuCGAUU...................... len:21 al:3
..................................................CAUGUGUUAAUUUGGgCGAU....................... len:20 al:1
..................................................CAUGUGUUAAUUUGGACGAUUA..................... len:22 al:23
..................................................CAUGUGcUAAUUUGGACG......................... len:18 al:1
..................................................CAUGUGUUuAUUUGGACGAU....................... len:20 al:1
..................................................CAUGUGUUAAUUUGGACGuUU...................... len:21 al:1
..................................................CAUGUGUUAAUUUGaACGAU....................... len:20 al:1
..................................................CAUGUGUUAAUUUGGACGAUc...................... len:21 al:196
..................................................CAUGUGUUAcUUUGGACGAUU...................... len:21 al:2
..................................................CAUGUGUUAAUUUGGACGcUU...................... len:21 al:1
..................................................CAUGUGUUAAUUUGaACGAUU...................... len:21 al:2
..................................................CAUGUGUUAAUUUGGACGgU....................... len:20 al:6
..................................................CAUGUGUUAAUUUGGACGu........................ len:19 al:8
..................................................CgUGUGUUAAUUUGGACGAU....................... len:20 al:5
..................................................CAUGUGUUAAUUUGGACGc........................ len:19 al:1
..................................................CcUGUGUUAAUUUGGACGAU....................... len:20 al:1
..................................................CAUGUGUUAAUUUGGACGAUUAuU................... len:24 al:1
..................................................CAcGUGUUAAUUUGGACGAU....................... len:20 al:2
..................................................CAUGaGUUAAUUUGGACG......................... len:18 al:1
..................................................aAUGUGUUAAUUUGGACGAU....................... len:20 al:2
..................................................CAUGUGUUAAUUUGGACGAU....................... len:20 al:738
...................................................AUGUGUUuAUUUGGACGAUU...................... len:20 al:1
...................................................AUGcGUUAAUUUGGACGAUU...................... len:20 al:1
...................................................AcGUGUUAAUUUGGACGAUU...................... len:20 al:2
...................................................AUGUGUUAAUUUGGACGAUc...................... len:20 al:15
...................................................cUGUGUUAAUUUGGACGAUU...................... len:20 al:1
...................................................AUGUGUUAAUUUGGACGAUU...................... len:20 al:125
...................................................AUGUGUUAAUUUGGACGAUa...................... len:20 al:3
...................................................AUGUGUUAAUcUGGACGAU....................... len:19 al:1
...................................................AUGUGUUAAUUUGGACGAU....................... len:19 al:6
...................................................AUGUGUUAAUUUGGACGA........................ len:18 al:1
...................................................AUGUGUUcAUUUGGACGAUU...................... len:20 al:1
...................................................gUGUGUUAAUUUGGACGAUU...................... len:20 al:1
....................................................UGUGUUAAUUUGGACGAUU...................... len:19 al:56
....................................................UGUGUUAAUUUGGgCGAUU...................... len:19 al:1
....................................................UGUGUUAAUUUGGACGAgU...................... len:19 al:1
....................................................UGUGUUAAUUUGGACGAUc...................... len:19 al:4
....................................................UGUGUUAAUUUaGACGAUU...................... len:19 al:1
....................................................cGUGUUAAUUUGGACGAUU...................... len:19 al:1
....................................................UGUGUUAAUcUGGACGAUU...................... len:19 al:1
....................................................UGUGUUAAUUUGGACGAUUA..................... len:20 al:8
....................................................UGUGUUAAUUUGGACGAU....................... len:18 al:11
....................................................UGUGUUAAUUUGGACGAUg...................... len:19 al:1