Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_942:133648-133739 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_8147.ps.pdf
Locus Name: Cluster_8147
UAUUGGUGUGUUGAUCACCACAGACUAACAGAGUUUCUUGGUUUAUUUCCUAGGUAACUCUGUUAGUUUGUUUUGACAAUCACAUGCUUUUU
.....((((((((.(((..((((((((((((((((.(((((........))))).))))))))))))))))..)))))).)))))....... (-36.60)
..................CACAGACUgACAGAGUUUCUUGG................................................... len:23 al:1
..................CACAGACUAACAGAGUUUCU...................................................... len:20 al:13
..................CACAGACUAACAGAGUUUCUUGa................................................... len:23 al:2
..................CACAGACUAACAGAGUUUCUUGu................................................... len:23 al:1
..................CACAGACUAACAGAGUUUC....................................................... len:19 al:1
..................CACAGACUAACAGAGUUU........................................................ len:18 al:1
..................CACAGACUAACAGAGUUUCUUGG................................................... len:23 al:13
..................CACAGACUAACgGAGUUUCUUGG................................................... len:23 al:1
..................CACAGACUAACAGAGUUUCUU..................................................... len:21 al:14
..................CACAGACUAACAGAGUUUCUc..................................................... len:21 al:1
...................ACAGACUAACAGAGU.......................................................... len:15 al:8
...................ACAGACcAACAGAGUUUCUU..................................................... len:20 al:2
...................ACAGACUAACAGAGUUUCUUGGg.................................................. len:23 al:29
...................ACAGACUAACAuAGUUUCUUGGUU................................................. len:24 al:1
...................ACAGACUAACAGAGUUUCcUGGU.................................................. len:23 al:5
...................ACAGACUAACAGAGUUUCUUGGUc................................................. len:24 al:499
...................ACAaACUAACAGAGUUUCUUGGU.................................................. len:23 al:1
...................ACAGACUAACAGgGUUUCUUGGUUUAUUUC........................................... len:30 al:1
...................ACAGACUAACAGuGUUUCUUGGUU................................................. len:24 al:2
...................ACAGACUAACAGAGUUUCUUGGUUUuU.............................................. len:27 al:1
...................ACAGgCUAACAGAGUUUCUU..................................................... len:20 al:3
...................ACAGACUAACAGAGUUUaUUGGUU................................................. len:24 al:1
...................ACAaACUAACAGAGUUUCU...................................................... len:19 al:1
...................ACAGgCUAACAGAGUUUCU...................................................... len:19 al:2
...................ACAGACUAACAGAGUUUCUUaGUU................................................. len:24 al:2
...................ACAGACUAACAGAGUUUCUUGaU.................................................. len:23 al:2
...................ACAGACUAACAGAGUUUCUUGa................................................... len:22 al:414
...................ACAGACUAACAGgGUUUCUUGGUU................................................. len:24 al:13
...................ACAGACUAACAGAGUUUCUUGGUUUAUUUCC.......................................... len:31 al:4
...................ACuGACUAACAGAGUUUCUU..................................................... len:20 al:2
...................ACgGACUAACAGAGUUUCUUGGUU................................................. len:24 al:25
...................ACAGACUAACAGAGUUUCU...................................................... len:19 al:371
...................AgAGACUAACAGAGUUUCUUGGU.................................................. len:23 al:1
...................ACAGACUAAaAGAGUUUCUU..................................................... len:20 al:1
...................ACAGACUAgCAGAGUUUCUUGGUUUAUUU............................................ len:29 al:1
...................ACAGACUAgCAGAGUUUCUUGGUU................................................. len:24 al:16
...................ACAGAuUAACAGAGUUUCUUGG................................................... len:22 al:4
...................ACAGgCUAACAGAGUUUCUUG.................................................... len:21 al:1
...................ACAGACUgACAGAGUUUCUUGGUU................................................. len:24 al:9
...................ACAGACUAAaAGAGUUUCUUGGU.................................................. len:23 al:1
...................ACgGACUAACAGAGUUUCU...................................................... len:19 al:4
...................ACAGACUAACuGAGUUUCUUGG................................................... len:22 al:1
...................ACAGACUAACAGAGUUU........................................................ len:17 al:8
...................ACAGACUAACAGuGUUUCUUGG................................................... len:22 al:3
...................ACAGACUAACAGAGUUUCUUuG................................................... len:22 al:1
...................ACAGACUAACAGAGUUUCUUGGU.................................................. len:23 al:2714
...................gCAGACUAACAGAGUUUCUUGGU.................................................. len:23 al:17
...................ACAGACUAACAGAGUUUCUUGGUg................................................. len:24 al:37
...................ACAGACUAgCAGAGUUUCUUGGU.................................................. len:23 al:9
...................ACAGACUAACAGAGUUUCa...................................................... len:19 al:6
...................ACAGACUAACAGAcUUUCUUGGU.................................................. len:23 al:1
...................ACAaACUAACAGAGUUUCUUGG................................................... len:22 al:5
...................AgAGACUAACAGAGUUUCUUGG................................................... len:22 al:1
...................ACAGgCUAACAGAGUUUCUUGGU.................................................. len:23 al:9
...................gCAGACUAACAGAGUUUCUUG.................................................... len:21 al:2
...................ACAGACUAACgGAGUUUCUUG.................................................... len:21 al:2
...................ACAGACUAACAGAGUUUCUUa.................................................... len:21 al:10
...................ACAGACUAACAGAGUUUCg...................................................... len:19 al:1
...................ACAGACUAACAGAGUUUCUgGGU.................................................. len:23 al:1
...................uCAGACUAACAGAGUUUCUUGG................................................... len:22 al:4
...................ACAGACUAACAGAGcUUCUU..................................................... len:20 al:1
...................ACAGACUAACAGAGUUUCUUGGUUU................................................ len:25 al:134
...................ACAGACUAACAGAGUUUCUg..................................................... len:20 al:7
...................ACAGACUAACAGgGUUUCUUGG................................................... len:22 al:22
...................ACAGACUAACAGAGUUUCc...................................................... len:19 al:31
...................ACAGACUAACAGcGUUUCUUGGU.................................................. len:23 al:1
...................ACAGACUAACAGAGUUUCaUGGUU................................................. len:24 al:2
...................ACAGACUAACAGAGUUUCUa..................................................... len:20 al:2
...................ACAGACUgACAGAGUUUCUUGG................................................... len:22 al:15
...................ACAGACUAgCAGAGUUUCUUGG................................................... len:22 al:13
...................ACAGACUAgCAGAGUUUCUUGGUUU................................................ len:25 al:1
...................ACAGACUAACAGgGUUUCUUGGU.................................................. len:23 al:9
...................AuAGACUAACAGAGUUUCUU..................................................... len:20 al:4
...................ACgGACUAACAGAGUUUCUUG.................................................... len:21 al:1
...................ACAGACUAACAGAuUUUCUUGG................................................... len:22 al:1
...................ACgGACUAACAGAGUUUCUUGGU.................................................. len:23 al:14
...................ACAGACUAACAGAGUUUCUUGuUU................................................. len:24 al:1
...................AuAGACUAACAGAGUUUCUUG.................................................... len:21 al:1
...................ACAGACUAACAGAGUcUCUU..................................................... len:20 al:4
...................ACAGACUAACAGAGUUUCUUGGUaUAUU............................................. len:28 al:4
...................gCAGACUAACAGAGUUUCUUGG................................................... len:22 al:19
...................ACAGACUAACAGAGUUUCUaGGUU................................................. len:24 al:1
...................ACAGACUAACAGAGUUaCUUGG................................................... len:22 al:1
...................ACAGACUAACAGAGUUUCUUGGUUUAUUUu........................................... len:30 al:1
...................ACAGACUAACAGAGUUUCUc..................................................... len:20 al:58
...................ACAGACUAACuGAGUUUCUUGGUU................................................. len:24 al:4
...................ACcGACUAACAGAGUUUCUUGGUU................................................. len:24 al:3
...................ACAGACUAgCAGAGUUUCUU..................................................... len:20 al:6
...................ACAGACUAACAGAGUUUCUcGG................................................... len:22 al:8
...................ACAGgCUAACAGAGUUUCUUGG................................................... len:22 al:14
...................ACAGACUAACAGAGUUUCUUGGaUU................................................ len:25 al:2
...................ACAGACUAACAGAGUUUCUUG.................................................... len:21 al:338
...................ACAGACUAACAGAGUUUCUUGGUaU................................................ len:25 al:50
...................ACAGACUAgCAGAGUUUC....................................................... len:18 al:1
...................ACAGACcAACAGAGUUUCUUGGUU................................................. len:24 al:11
...................ACAGACUAACAGAGUUcCUUGG................................................... len:22 al:9
...................ACAGACUAACcGAGUUUCUUGGUU................................................. len:24 al:2
...................ACAGACUAACAGAGUUUCUgGG................................................... len:22 al:4
...................ACAGACUAACAGAGUUUCUUGGUa................................................. len:24 al:1356
...................ACAGACUAACAGAGUUUCUcG.................................................... len:21 al:2
...................gCAGACUAACAGAGUUUCUUGGUU................................................. len:24 al:13
...................ACAGcCUAACAGAGUUUCUUGGU.................................................. len:23 al:3
...................ACAGACUAACAGAGUUUCUUGGUUUc............................................... len:26 al:1
...................ACAGACcAACAGAGUUUCUUGG................................................... len:22 al:6
...................ACAGACUAACAGAGUUUCUUu.................................................... len:21 al:83
...................ACAGACUAACAGAGgUUCUUGGU.................................................. len:23 al:1
...................ACAGACUAACcGAGUUUCUUGG................................................... len:22 al:2
...................ACAGAuUAACAGAGUUUCUUGGU.................................................. len:23 al:2
...................ACAGACUAACAGAGUUcCUU..................................................... len:20 al:1
...................ACAGACUAACAGAGUaUCUUGG................................................... len:22 al:1
...................AaAGACUAACAGAGUUUCUUGGUU................................................. len:24 al:1
...................ACAGACUAACAGAGUUUCUUGGUUUAUUUCa.......................................... len:31 al:1
...................ACAGACUAACAGAGUUUCUUGGUUa................................................ len:25 al:10
...................ACgGACUAACAGAGUUUCUU..................................................... len:20 al:6
...................ACAGACUAACAGAGcUUCUUGG................................................... len:22 al:10
...................ACAGACUuACAGAGUUUCUUGGUU................................................. len:24 al:1
...................ACAGACUAACAGAGUUcCUUG.................................................... len:21 al:2
...................ACAGACUgACAGAGUUUCUUGGU.................................................. len:23 al:8
...................ACAGACUAACAaAGUUUCUUGG................................................... len:22 al:3
...................ACAGACUAAuAGAGUUUCUUGGUU................................................. len:24 al:2
...................ACAGACUAACAGgGUUUCU...................................................... len:19 al:2
...................ACAGACUAACAGcGUUUCUUGG................................................... len:22 al:1
...................ACAGACUAACAGAGUUUCcU..................................................... len:20 al:1
...................ACAGACUAACAaAGUUUCUUGGUU................................................. len:24 al:2
...................ACAGACUAACAGAGUUUCUUGc................................................... len:22 al:40
...................ACAGACUcACAGAGUUUCUUGGUUU................................................ len:25 al:2
...................ACAGACUAACgGAGUUUCUUGGUU................................................. len:24 al:19
...................AuAGACUAACAGAGUUUCUUGGUU................................................. len:24 al:9
...................ACAGACUAACAGAGUUUCUUGGcU................................................. len:24 al:24
...................ACAcACUAACAGAGUUUCUUGGUU................................................. len:24 al:2
...................ACAGACUAACAGcGUUUCUUG.................................................... len:21 al:1
...................ACAGuCUAACAGAGUUUCUUGGUU................................................. len:24 al:1
...................ACAGACUAACAGAGUUcCU...................................................... len:19 al:2
...................ACAGACUAACAGAGcUUCUUGGUU................................................. len:24 al:10
...................ACAGACUAAuAGAGUUUCUUGGU.................................................. len:23 al:2
...................cCAGACUAACAGAGUUUCUUGGUUU................................................ len:25 al:1
...................ACAGgCUAACAGAGUUUCUUGGUU................................................. len:24 al:25
...................ACAGACUcACAGAGUUUCUUGGU.................................................. len:23 al:1
...................ACAGACUAACgGAGUUUCUUGGU.................................................. len:23 al:4
...................ACAGACUAACAuAGUUUCUUGG................................................... len:22 al:1
...................ACAGuCUAACAGAGUUUCUUGG................................................... len:22 al:1
...................gCAGACUAACAGAGUUUCUU..................................................... len:20 al:7
...................ACAGACUAACAGAGUUUCUUGu................................................... len:22 al:216
...................ACAGACUAACAGAGUUUCUUGGUUUAUU............................................. len:28 al:1
...................ACAGACUAACcGAGUUUCUUGGU.................................................. len:23 al:1
...................ACAGACUAuCAGAGUUUCUUGGU.................................................. len:23 al:1
...................ACAGACUAACAGAGUUUCUcGGU.................................................. len:23 al:7
...................ACAGACUAACAGAaUUUCUUGGU.................................................. len:23 al:1
...................ACAGACUAACAGAGUUUCUUGGaU................................................. len:24 al:4
...................ACAGACUAACAGAGUUUCUUGGc.................................................. len:23 al:345
...................ACAGACUAACAGAGUUaCUUGGUU................................................. len:24 al:2
...................ACAGACUAACgGAGUUUCU...................................................... len:19 al:4
...................ACAGACUAuCAGAGUUUCUU..................................................... len:20 al:2
...................ACAGACUAuCAGAGUUUCUUGG................................................... len:22 al:1
...................ACAGACUAACAGAGUUUCUUGGUgU................................................ len:25 al:3
...................ACAGACUgACAGAGUUUCUUG.................................................... len:21 al:1
...................cCAGACUAACAGAGUUUCUUGG................................................... len:22 al:4
...................ACAGACUAACAGAGUUUCUcGGUUU................................................ len:25 al:1
...................ACcGACUAACAGAGUUUCUUGGU.................................................. len:23 al:1
...................ACAGgCUAACAGAGUUUCUUGGUUU................................................ len:25 al:1
...................ACAGACUAAuAGAGUUUCUUGG................................................... len:22 al:2
...................ACAGACUAACAGAGUUUCUUGGUUUA............................................... len:26 al:3
...................ACuGACUAACAGAGUUUCUUGG................................................... len:22 al:2
...................ACgGACUAACAGAGUUUCUUGG................................................... len:22 al:16
...................ACAGACUAACAGAGUUUCUUGcU.................................................. len:23 al:13
...................ACAGAuUAACAGAGUUUCUUGGUU................................................. len:24 al:3
...................ACAGACUAACAGAGUUUCUUaGU.................................................. len:23 al:2
...................ACAGACUcACAGAGUUUCUUGG................................................... len:22 al:2
...................ACAGACUAACAGAGUUUCUUGG................................................... len:22 al:4300
...................ACAGACUAACAGAGUUUCUaGG................................................... len:22 al:1
...................ACAGACUAACAGAGUUUCUUGuU.................................................. len:23 al:154
...................ACAGACUAACAGAGUUUCUUGGUaUA............................................... len:26 al:97
...................ACAGACUAACAGAGUUUCUUGGgU................................................. len:24 al:21
...................ACAGACUAACAGAGUcUCUUGGUU................................................. len:24 al:8
...................ACAGACUAACAGAGUUUCUUGGUUc................................................ len:25 al:10
...................ACAGACUAACAGAGUUUCUUuGUU................................................. len:24 al:1
...................ACAGACUAuCAGAGUUUCUUGGUU................................................. len:24 al:3
...................ACAGACUAACAGAGUUUCUUGGa.................................................. len:23 al:63
...................ACAGACUAACAGAGUUUCUU..................................................... len:20 al:903
...................ACAGACUAACAGgGUUUCUU..................................................... len:20 al:5
...................ACAGACUAACAGAGUUcCUUGGU.................................................. len:23 al:8
...................ACAGACUAcCAGAGUUUCUUGGU.................................................. len:23 al:1
...................ACAGACUAACAGAGUUUC....................................................... len:18 al:31
...................ACAGACUAACAGAGcUUCUUGGU.................................................. len:23 al:10
...................ACAGACUAACAGAGUUUCgU..................................................... len:20 al:4
...................ACAGACcAACAGAGUUUCUUG.................................................... len:21 al:1
...................ACAGACUAACgGAGUUUCUU..................................................... len:20 al:4
...................ACAGACUAACAGAGUUUCUUGGUUUu............................................... len:26 al:2
...................ACAGACUAcCAGAGUUUCUUGG................................................... len:22 al:3
...................ACAGACUcACAGAGUUUCUUGGUU................................................. len:24 al:2
...................uCAGACUAACAGAGUUUCUUGGU.................................................. len:23 al:2
...................cCAGACUAACAGAGUUUCUUGGUU................................................. len:24 al:6
...................ACAGACUAAgAGAGUUUCUUGG................................................... len:22 al:1
...................ACAGACUAACAGAGUUcCUUGGUU................................................. len:24 al:7
...................ACAGACUAACAGAGUUUCUUGGUUUAUUUC........................................... len:30 al:6
...................ACAGACUAACAGAGUUUCUUuGU.................................................. len:23 al:17
...................ACAaACUAACAGAGUUUCUUGGUU................................................. len:24 al:5
...................ACAGACUAACAGAGUcUCUUGGU.................................................. len:23 al:3
...................ACAGACUAcCAGAGUUUCUUGGUU................................................. len:24 al:3
...................AuAGACUAACAGAGUUUCUUGG................................................... len:22 al:3
...................ACAGACUAACAGAGUUUuUUGG................................................... len:22 al:1
...................ACAGACUAACAGgGUUUCUUG.................................................... len:21 al:1
...................uCAGACUAACAGAGUUUCUUGGUU................................................. len:24 al:3
...................ACAGACUAACAGAGUUUCUUGGUaUAU.............................................. len:27 al:14
...................ACAGACUAACAGAGUU......................................................... len:16 al:2
...................ACuGACUAACAGAGUUUCUUGGU.................................................. len:23 al:1
...................ACAGACUAACAGAGUUUuU...................................................... len:19 al:1
...................ACAGACUgACAGAGUUUCUU..................................................... len:20 al:4
...................ACAGACUAACAGAGUUUCaUGGU.................................................. len:23 al:1
...................ACAGACUAACAGAGUc......................................................... len:16 al:1
...................ACAGACaAACAGAGUUUCUUGGU.................................................. len:23 al:1
...................ACAGcCUAACAGAGUUUCUUGG................................................... len:22 al:1
...................AuAGACUAACAGAGUUUCU...................................................... len:19 al:6
...................ACAGACUAACAGAGgUUCUUGGUU................................................. len:24 al:1
...................ACuGACUAACAGAGUUUCUUGGUU................................................. len:24 al:8
...................ACAGACUAACAGAGUUUCUcGGUU................................................. len:24 al:13
...................ACuGACUAACAGAGUUUCU...................................................... len:19 al:1
...................ACAGACUAACAGAGUUUCUUGGUUUAUUU............................................ len:29 al:8
...................ACAGACUgACAGAGUUUCUUGGUUU................................................ len:25 al:2
...................ACAGACUAACAGAGUUUCUUc.................................................... len:21 al:7
...................ACAGACUAACAGAGUcUCUUGG................................................... len:22 al:10
...................ACAGACUAACAGAGUUUCcUGG................................................... len:22 al:9
...................ACAGACUAACAGAGUUUCcUGGUU................................................. len:24 al:11
...................ACAGACUAACAGcGUUUCUUGGUU................................................. len:24 al:2
...................cCAGACUAACAGAGUUUCUU..................................................... len:20 al:1
...................ACAGACUAACgGAGUUUCUUGG................................................... len:22 al:11
...................ACAGACUAACAGAGUUUCUUGGUaUAUUU............................................ len:29 al:1
...................ACAGcCUAACAGAGUUUCUU..................................................... len:20 al:1
...................ACAGACcAACAGAGUUUCU...................................................... len:19 al:2
...................ACAGACUAACAGAGUUUCUUGGUU................................................. len:24 al:4051
...................ACAGAaUAACAGAGUUUCUUGGUUU................................................ len:25 al:1
....................CAGACUAACAGAGUUUCUUGGUc................................................. len:23 al:5
....................CAGACUAACAGAGUUUCUc..................................................... len:19 al:1
....................CAGACUAACAGAGUUUCUUGGUU................................................. len:23 al:42
....................CAGACUAACAGAGUUUCUUu.................................................... len:20 al:3
....................CAGACUAACAGAGUUUCUUGGa.................................................. len:22 al:8
....................CAGgCUAACAGAGUUUCUUGGUU................................................. len:23 al:1
....................CAGACUAACAGAGUUUCUU..................................................... len:19 al:2
....................CAGACUAACAGAGUUUCUUGGg.................................................. len:22 al:1
....................CAGACUAACAGAGUUUCUUGGUa................................................. len:23 al:15
....................CAGACUAACAGAGUUcCUUGGUU................................................. len:23 al:1
....................CAGACUAACAGAGUUUCUUGGU.................................................. len:22 al:23
....................CAGACUAACAGAGUUUCUUGGc.................................................. len:22 al:9
....................CAGACUAACAGAGUUUCUUGGgU................................................. len:23 al:1
....................CAGACUAACAGAGUUUCUUGG................................................... len:21 al:4
.....................AGACUAACAGAGUUUCUUu.................................................... len:19 al:1
.....................AGACUAACAGAGUUUCUUGG................................................... len:20 al:11
.....................AGACUAACAGAGUcUCUUGGU.................................................. len:21 al:2
.....................AGACUAACAGAGUUUCUcGGUU................................................. len:22 al:1
.....................AGACUAACAGAGUUUCUUGGUgU................................................ len:23 al:1
.....................AGACUAACAGAGUUcCUUGGUU................................................. len:22 al:1
.....................AGACUAACAGAGUUUCUUaG................................................... len:20 al:1
.....................AGACUAACgGAGUUUCUUGGU.................................................. len:21 al:1
.....................AGACUAACAGAGUUUCUUGGUUU................................................ len:23 al:6
.....................AGACUAACAGAGUUaCUUGGUU................................................. len:22 al:1
.....................AGACUAACAGAGUUUCUU..................................................... len:18 al:15
.....................AGACUAACAGAGUUU........................................................ len:15 al:1
.....................AGACUAACAGAGUUUCUUGGUU................................................. len:22 al:330
.....................AGACUAACAGAGUUUCUUGGU.................................................. len:21 al:162
.....................AGACUAACAGAGUUUCUUGGa.................................................. len:21 al:5
.....................AGACUgACAGAGUUUCUUGGUUU................................................ len:23 al:2
.....................AGACUAACAGAGUUUCcUGGUU................................................. len:22 al:2
.....................AGACUAACAGAGUUUCUUGGUc................................................. len:22 al:53
.....................AGgCUAACAGAGUUUCUUGGUU................................................. len:22 al:1
.....................AGACUAACAGAGUUUCUUGGUaUA............................................... len:24 al:3
.....................AGACUAAuAGAGUUUCUUGGU.................................................. len:21 al:1
.....................AGACUAACAGAGUUUCUUGGg.................................................. len:21 al:2
.....................AGACUAACAGAGUUUCUUGGUg................................................. len:22 al:1
.....................AGACUAACAGAGUUcCUUGGU.................................................. len:21 al:1
.....................AGACUAACAGAGUUUCUUGGc.................................................. len:21 al:32
.....................AGACUAACAGAGUUUCUUGu................................................... len:20 al:4
.....................AGACUAACAGAGUUUCUUG.................................................... len:19 al:6
.....................AGACUAACAGAGcUUCUUGGU.................................................. len:21 al:1
.....................AGACUAACAGAGUUUCUUGa................................................... len:20 al:2
.....................AGACUAACAGAGUUUCUUGGUa................................................. len:22 al:99
.....................AGACUAgCAGAGUUUCUUGG................................................... len:20 al:1
.....................gGACUAACAGAGUUUCUUGGU.................................................. len:21 al:1
.....................AGACcAACAGAGUUUCUUGGUU................................................. len:22 al:1
.....................AGACUAACgGAGUUUCUUGGUU................................................. len:22 al:2
.....................gGACUAACAGAGUUUCUUGGUU................................................. len:22 al:6
.....................AGACUAACAGAGUUUuUUGGUU................................................. len:22 al:1
.....................AGACUAACAGgGUUUCUUGGUU................................................. len:22 al:2
.....................AGACUAACAGAGUUUCUUGGcU................................................. len:22 al:5
.....................AGACUAACAGAGUUUCUUGGaU................................................. len:22 al:1
.....................AGACUAgCAGAGUUUCUUGGUU................................................. len:22 al:2
.....................AGACUAACAGAGcUUCUUGGUU................................................. len:22 al:3
.....................AGACUAACAGAGUUUCUUGGUaU................................................ len:23 al:11
.....................AGACUAACgGAGUUUCUU..................................................... len:18 al:2
......................GACUAACAGAGUUUCUUGGU.................................................. len:20 al:1
......................GACcAACAGAGUUUCUUGGU.................................................. len:20 al:2
........................CUAACAGAGUUUCUUGGU.................................................. len:18 al:1
.......................................GGUUUAUUUCCUAGGUAACUCUGUc............................ len:25 al:1
.......................................cGUUUAUUUCCUAGGUAACUCUGUUAGUUU....................... len:30 al:1
.......................................GGUUUAUUUCCUAGGUAACUCUGUUAGcUU....................... len:30 al:1
.......................................GGUUUAUUUCCUAGGUAACUCUGcUAGUUU....................... len:30 al:1
.......................................GGUUUAUUUCCUAGGUAACUCUGUUAGUUUG...................... len:31 al:1
.......................................GGUUUAUUUCCUAGGUAACUCUGUUAGUUc....................... len:30 al:4
.......................................GGUUUAUcUCCUAGGUAACUCUGUUAGUUU....................... len:30 al:1
.......................................GGUUUAUUUCCUAGGUAACUCUGUU............................ len:25 al:1
.......................................GGUUUAUUcCCUAGGUAACUCUGUUAGUUU....................... len:30 al:2
.......................................GGUUUAUUUCCUAGGUAACUCUGUUA........................... len:26 al:1
.......................................GGUUUAUUUCCUAGGUAACUCUGUUAGU......................... len:28 al:8
.......................................GGUUUAUUUCCUAGGUAACUCUGUUAGUUU....................... len:30 al:63
.......................................GGUUUAUUUCCUAGGUAACUCUGUUAGUU........................ len:29 al:2
.......................................GGUUUAUUUCCUAGGUgACUCUGUUAGUUU....................... len:30 al:1
........................................GUUUAUUUCCUAGGUAACUCUGUUAGUUU....................... len:29 al:102
........................................GUUUAUUUCCUAGGUAACUCUGUUAGUU........................ len:28 al:9
........................................GUUUAUUUCCUAGGUAACUCUGcUAGU......................... len:27 al:3
........................................GcUUAUUUCCUAGGUAACUCUGUUAGUUU....................... len:29 al:1
........................................GUUUAUUUCCUAGGUAACUCUGUUuGU......................... len:27 al:1
........................................GUUUAUUUCCUAGGUAACUCUGUUAGUUc....................... len:29 al:4
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