Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_910:139331-139420 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_8075.ps.pdf
Locus Name: Cluster_8075
AGAAGACUGGGCGAUGCGGGUCAAAUGUUUCGGCUUGUUCCCGUUUCAGAGAACAAGCCGAAGCAUUUGACUUUUGUCUGCCAAUAUUAC
.........(((((((.(((((((((((((((((((((((.(......).))))))))))))))))))))))).)))).)))........ (-45.30)
AGAAGACUGGGCGAUGCGGGUC.................................................................... len:22 al:2
.GAAGACUGGGCGAUGCGGGUu.................................................................... len:21 al:1
.GAAGACUGGGCGAUGCGGGUC.................................................................... len:21 al:21
..AAGACUGGGCGAUGCGGaUC.................................................................... len:20 al:1
..AAGACUGaGCGAUGCGGGUC.................................................................... len:20 al:1
..AAGACUGGGCGAUGuGGGUC.................................................................... len:20 al:1
..AAGACUGGGCGAUGCGGGU..................................................................... len:19 al:5
..AAGACUGGGCuAUGCGGGUC.................................................................... len:20 al:1
..cAGACUGGGCGAUGCGGGUC.................................................................... len:20 al:1
..AAGACUGGGCGAUGCGGGUu.................................................................... len:20 al:20
..AAGACUGGGCGAUGCGGGUa.................................................................... len:20 al:7
..AAGACUGGGCGAUGCaGGUC.................................................................... len:20 al:1
..AAGACUGGGCGAUGCGGGc..................................................................... len:19 al:2
..AAGACUGGGCGAUGCGGGUC.................................................................... len:20 al:95
...AGACUGGGCGAUGCGGGU..................................................................... len:18 al:1
...AGACUGGGCGAUGCGGGUC.................................................................... len:19 al:13
...AGACUGGGCGAUGCGGGUu.................................................................... len:19 al:1
...................GUCAAAUGUUUCGGCUUGUUCC................................................. len:22 al:1
....................UCAAAUGUUUCGGCUUGUUCC................................................. len:21 al:2
....................UCAAAUGUUUCGGCUUGUUCCC................................................ len:22 al:5
....................UCAAAUGUUUCGGCUUGUUCCu................................................ len:22 al:1
....................UCAAAUGUUUCGGCUUGUUC.................................................. len:20 al:1
....................UCAAAUGUUUCGGCUUGUUCa................................................. len:21 al:1
.....................CAAAUGUUUCGGCUUGUUCa................................................. len:20 al:1
.....................CAAAUGUUUCGGCUUGUUCCCu............................................... len:22 al:25
.....................CAAAUGUUUCGGCUUGUUCC................................................. len:20 al:2
.....................CAAAUGUUUCGGCUUGUUCCCc............................................... len:22 al:2
.....................CAAAUGUUUCGGCUUGUUCCC................................................ len:21 al:6
.....................CAAAUGUUUCGGCUUGUU................................................... len:18 al:2
.....................CAAAUGUUUCGGCUUGUUC.................................................. len:19 al:1
......................AAAcGUUUCGGCUUGUUCC................................................. len:19 al:8
......................AuAUGUUUCGGCUUGUUCCC................................................ len:20 al:11
......................AAcUGUUUCGGCUUGUUCCC................................................ len:20 al:244
......................AAAUGUUUCGGCUUGUUCCCGU.............................................. len:22 al:3
......................AAAUGUUUCGGCUUGUUCCC................................................ len:20 al:33674
......................AAAUGUUUCGGCUUGUUCCCG............................................... len:21 al:234
......................AAAUGUUUCGGCUUGgUCCC................................................ len:20 al:3
......................AAAcGUUUCGGCUUGUUC.................................................. len:18 al:3
......................AAAUGcUUCGGCUUGUUCCCG............................................... len:21 al:1
......................AAAUGUUUCGGCUUGUUCCCcU.............................................. len:22 al:63
......................AAAUGUcUCGGCUUGUUCC................................................. len:19 al:12
......................AAAUGUUUCGGCUUGUUCaC................................................ len:20 al:18
......................AAAUGUUUCGGCUUGUUuCCG............................................... len:21 al:1
......................AAAUGUUUCGGCUUGUUCCCuUUU............................................ len:24 al:60
......................AAAUGUUUCGGCUUGcUCCC................................................ len:20 al:135
......................AAAUGUUUCaGCUUGUUCCC................................................ len:20 al:24
......................AAAUGcUUCGGCUUGUUCCC................................................ len:20 al:53
......................AAAUGUUUCGGCUUGUUCCCu............................................... len:21 al:5092
......................AgAUGUUUCGGCUUGUUCC................................................. len:19 al:17
......................AAAUGgUUCGGCUUGUUCCC................................................ len:20 al:4
......................AAAUGUUUCGGCUUGa.................................................... len:16 al:1
......................AAAUGUUUCGGCgUGUUC.................................................. len:18 al:1
......................AAAUGUUUCGGuUUGUUCCC................................................ len:20 al:30
......................AAAUGUUUCGGCUUGUUCCCc............................................... len:21 al:870
......................AAAUGUUUCGcCUUGUUCCC................................................ len:20 al:1
......................AAAUGUUUCGGCUUGUcCC................................................. len:19 al:14
......................AAAUGUUUCcGCUUGUUCCC................................................ len:20 al:1
......................AAAcGUUUCGGCUUGUUCCCG............................................... len:21 al:1
......................AAAUGUUUCGGCUUaUUCC................................................. len:19 al:4
......................AAAUGUUcCGGCUUGUUC.................................................. len:18 al:7
......................AAAUGUUUuGGCUUGUUCC................................................. len:19 al:6
......................AAgUGUUUCGGCUUGUUC.................................................. len:18 al:3
......................AAAUGUUaCGGCUUGUUCCC................................................ len:20 al:6
......................AAAUGUUUCGGCUUGUg................................................... len:17 al:3
......................AAAUGUUUCGGCUUGUUu.................................................. len:18 al:348
......................AAAUGUUUCGGCUUGUUCu................................................. len:19 al:859
......................AAAUGUUUCGGCUgGUUC.................................................. len:18 al:1
......................AAAUGUUUCGGaUUGUUCCC................................................ len:20 al:5
......................AAAUGUUUCGGCUUGUUCCCGUU............................................. len:23 al:12
......................AAAUGUgUCGGCUUGUUCCC................................................ len:20 al:1
......................AcAUGUUUCGGCUUGUUC.................................................. len:18 al:2
......................AAAUaUUUCGGCUUGUUCC................................................. len:19 al:1
......................AAAUGUUUCGGCUUGUUgCC................................................ len:20 al:3
......................AAAUGUUUCGGCUUGUUCa................................................. len:19 al:3391
......................AAAaGUUUCGGCUUGUUC.................................................. len:18 al:1
......................AAAUGUUUCGGuUUGUUCC................................................. len:19 al:4
......................AAAUaUUUCGGCUUGUUC.................................................. len:18 al:1
......................AAgUGUUUCGGCUUGUUCCCG............................................... len:21 al:2
......................AAAUaUUUCGGCUUGUUCCC................................................ len:20 al:24
......................AAAUGUUUCGGCUUGUUuC................................................. len:19 al:14
......................AAgUGUUUCGGCUUGUUCCC................................................ len:20 al:99
......................AAcUGUUUCGGCUUGUU................................................... len:17 al:1
......................AAAUGUUUCGGCUUGgUCC................................................. len:19 al:1
......................AAAUGUUUCGGCUUGU.................................................... len:16 al:4
......................AAAUuUUUCGGCUUGUUCCC................................................ len:20 al:1
......................AAAUGUUUCGGCUUGcUCC................................................. len:19 al:14
......................AAAUGUUUCGGCUcGUUCC................................................. len:19 al:18
......................AAAUGUUUCGGCUUGUUCCg................................................ len:20 al:163
......................AAAUGUUUCGGCUUGUaC.................................................. len:18 al:4
......................AgAUGUUUCGGCUUGUUCCC................................................ len:20 al:142
......................AAAUGUUUaGGCUUGUUCCC................................................ len:20 al:3
......................AAAUGUUUCGGCcUGUUC.................................................. len:18 al:9
......................AAAUGUUUuGGCUUGUUC.................................................. len:18 al:1
......................AAAUGUUgCGGCUUGUUCCC................................................ len:20 al:5
......................AAAUGUaUCGGCUUGUUCCC................................................ len:20 al:3
......................AAAaGUUUCGGCUUGUUCCC................................................ len:20 al:1
......................AAAUGUUUCGGCUUGUUCCa................................................ len:20 al:2085
......................AAAUGUUUCGGCUUGUUCCu................................................ len:20 al:12699
......................AAAUGUUUCuGCUUGUUCCC................................................ len:20 al:5
......................AAAUGUUUCGGCUUGUaCC................................................. len:19 al:1
......................AAAUGUUcCGGCUUGUUCCCG............................................... len:21 al:1
......................AAAUGUUUCGGCUUG..................................................... len:15 al:1
......................AAcUGUUUCGGCUUGUUCC................................................. len:19 al:29
......................AAAUGUUUCGGCUUGUUC.................................................. len:18 al:2226
......................AAuUGUUUCGGCUUGUUCCCG............................................... len:21 al:1
......................AcAUGUUUCGGCUUGUUCCC................................................ len:20 al:20
......................AAAUGUUUCGGCUUGUc................................................... len:17 al:4
......................AAAUGUUUCGGCUUGUUCCCuUU............................................. len:23 al:119
......................AAAUGaUUCGGCUUGUUCCC................................................ len:20 al:1
......................AAAUGUUUCGGCgUGUUCC................................................. len:19 al:1
......................AAAUGUaUCGGCUUGUUCC................................................. len:19 al:1
......................AAAUGUUUCGGCUUGUUuCC................................................ len:20 al:43
......................AAAUGUUUCGGCUUGUUCCCuUUUC........................................... len:25 al:3
......................AAAUGUUcCGGCUUGUUCCC................................................ len:20 al:71
......................AAAUGcUUCGGCUUGUUCC................................................. len:19 al:11
......................AAAUGUUUCGGCUUGUUCCuG............................................... len:21 al:2
......................AAAUGUUUCGGCUgGUUCC................................................. len:19 al:1
......................AAAUGUUUCGGCUUGUUCuC................................................ len:20 al:20
......................AAAUGUUcCGGCUUGUUCC................................................. len:19 al:12
......................AAAUGUUUCGGCUUGUcC.................................................. len:18 al:10
......................AAAcGUUUCGGCUUGUUCCC................................................ len:20 al:81
......................AAAUGUUUCGGCUgGUUCCC................................................ len:20 al:3
......................AAAgGUUUCGGCUUGUUCCC................................................ len:20 al:1
......................AAAUGUUUCaGCUUGUUCC................................................. len:19 al:4
......................AAAUGUUUCGGCUUaUUC.................................................. len:18 al:1
......................AAcUGUUUCGGCUUGUUCCCG............................................... len:21 al:5
......................AcAUGUUUCGGCUUGUUCC................................................. len:19 al:3
......................AAAUGUUUCGGCUUGUU................................................... len:17 al:21
......................AAAUGUUUCGGCUUaUUCCC................................................ len:20 al:28
......................AAAUGUUUCGaCUUGUUCC................................................. len:19 al:4
......................AAAUGUcUCGGCUUGUUCCC................................................ len:20 al:99
......................AAAUGUUUCGGCUUGUUgC................................................. len:19 al:1
......................AAAUGUUUCGGCUUGUUCCCGUc............................................. len:23 al:1
......................AAAUGUUUCGGCcUGUUCCC................................................ len:20 al:135
......................AAAUGUUUCGuCUUGUUCCC................................................ len:20 al:4
......................AAAUGUUUCGGCUUGUUCg................................................. len:19 al:94
......................AAcUGUUUCGGCUUGUUC.................................................. len:18 al:14
......................AAAUGUUUCGaCUUGUUC.................................................. len:18 al:2
......................AAAUGUUUCGGCUUGUcCCCG............................................... len:21 al:3
......................AAAUGUUUCGGCgUGUUCCC................................................ len:20 al:4
......................AAAUGUUUCGGCUaGUUCC................................................. len:19 al:1
......................AAAUGUUUCGGCUUGUUCC................................................. len:19 al:4027
......................AAAUGUUUCGGCUUGcUC.................................................. len:18 al:5
......................AAAUGUUUCGGCUUGaUCCC................................................ len:20 al:4
......................AAAUGUUaCGGCUUGUUCC................................................. len:19 al:2
......................AAAUGUUgCGGCUUGUUCC................................................. len:19 al:2
......................AAAUGUUUCGGCUUGUUCCCuU.............................................. len:22 al:177
......................AAAUGUUUCGGCUaGUUCCC................................................ len:20 al:7
......................AAAUGUUUCGGCUUGUgC.................................................. len:18 al:1
......................AuAUGUUUCGGCUUGUUC.................................................. len:18 al:1
......................AAAUGUUUCGGCaUGUUCCC................................................ len:20 al:10
......................AAAUGUUUCGGCUUGUUCCCa............................................... len:21 al:125
......................AAAUGUUUCGGCUUGUUaC................................................. len:19 al:23
......................AAAUGUUUCGGCUUGUUg.................................................. len:18 al:7
......................AAAUGUUUCGGCUUGcUCCCG............................................... len:21 al:1
......................AAAUGUUUCaGCUUGUUC.................................................. len:18 al:3
......................AAAUGUUUCGaCUUGUUCCC................................................ len:20 al:39
......................AAAUGUUUCGGuUUGUUC.................................................. len:18 al:2
......................AAAUGUUUuGGCUUGUUCCC................................................ len:20 al:22
......................AAAUGUUUCGGCcUGUUCC................................................. len:19 al:10
......................AuAUGUUUCGGCUUGUUCC................................................. len:19 al:1
......................AAAUGUUUCGGCUcGUUCCC................................................ len:20 al:97
......................AAAUGUUUCGGCUUGUaCCC................................................ len:20 al:7
......................AAuUGUUUCGGCUUGUUCCC................................................ len:20 al:3
......................AAAUGUUUCGGCUUGUcCCC................................................ len:20 al:97
......................AgAUGUUUCGGCUUGUUCCCG............................................... len:21 al:2
......................AAAUGUcUCGGCUUGUUC.................................................. len:18 al:3
......................AAAUGUUUCGGCUcGUUC.................................................. len:18 al:6
......................AAAUGUUUCGGCUUGUUaCC................................................ len:20 al:1
......................AAAUGUUUCGGCUUGUUa.................................................. len:18 al:82
......................AAgUGUUUCGGCUUGUUCC................................................. len:19 al:8
.......................AAUGUUUCGGCUUGUUCCCGUc............................................. len:22 al:1
.......................AAUGUUUCGGCUUGUUCCu................................................ len:19 al:1
.......................AAUGUUUCGGCUUGUUCCCGUU............................................. len:22 al:13
.......................AAUGUUUCGGCUUGUUCCCGU.............................................. len:21 al:3
.......................AAUGUUUCGGCUUGcUCCCGUU............................................. len:22 al:1
.......................AAUGUUUCGGCUUGUUCCCG............................................... len:20 al:4
.......................AAUGUUUCGGCUUGUUCCC................................................ len:19 al:3
........................AUGUUUCGGCUUGUUCCCGUUUCAGAGAACA................................... len:31 al:2
........................AUGUUUCGGCUUGUUCCCG............................................... len:19 al:1
........................AUGUUUCGGCUUGUUCCCGUc............................................. len:21 al:1
........................AUGUUUCGGCUUGUUCCCGU.............................................. len:20 al:1
........................AUGUUUCGGCUUGUUCCCGUUUCAGAGAACu................................... len:31 al:3
........................AUGUUUCGGCUUGUUCCCGUU............................................. len:21 al:1
........................AUGUUUCGGCUUGUUCCCGUUUCAGAGAACc................................... len:31 al:1
.........................UGUUUCGGCUUGUUCCCGUU............................................. len:20 al:6
.........................UGUUUCGGCUUGUUCCCGUc............................................. len:20 al:1
.........................UGUUUCGGCUUGUUCCCGUUUCAGAGAACu................................... len:30 al:2
..........................GUUUCGGCUUGUUCCCGUU............................................. len:19 al:1
.......................................CCCGUUUCAGAGAACAAGCCGAAGCAUUUGA.................... len:31 al:1
.........................................CGUUUCAGAGAACAAGCCGAAGCAUUUGA.................... len:29 al:1
.........................................CGUUUCAGAGAACAAGCCGAAGCAUUUG..................... len:28 al:2
.........................................CGUUUCAGAGAACAAGCu............................... len:18 al:1
..........................................GUUUCAGAGAACAAGCCGAAGCAUUUGA.................... len:28 al:4
...........................................UUUCAGAGAACAAGCCGAAGCAUU....................... len:24 al:1
............................................UUCAGAGAACAAGCCGAAGCAUUU...................... len:24 al:3
............................................UUCAGAGAACAAGCCGAAGCAUUc...................... len:24 al:1
.............................................UCAGAGAACAAGCCGAAGCAUc....................... len:22 al:1
.............................................UCAGAGAACAAGCCGAAGCAUUU...................... len:23 al:1
.............................................UCAGAGAACAAGCCGAAGCAUU....................... len:22 al:3
.............................................UCAGAGAcCAAGCCGAAGCAUU....................... len:22 al:1
.............................................UCAGAGAACAAGCCGAAGCA......................... len:20 al:1
..............................................CAGAGAACAAGCCGAAGCAUU....................... len:21 al:4
..............................................CAGAGAACAAGCCGAAGCAUUUGA.................... len:24 al:2
..............................................CAGAGAACAAGCuGAAGCAUU....................... len:21 al:1
...............................................cGAGAACAAGCCGAAGCAUU....................... len:20 al:1
...............................................AGAGAACAAGCCGAAGCAUU....................... len:20 al:17
...............................................AGAGAACAAGCCGAAGCAUUUGA.................... len:23 al:9
...............................................AGAGAACAAGCCGAAGCAUUUGu.................... len:23 al:1
................................................GAGAACAAGCCGAAGCAUUU...................... len:20 al:1
................................................GAGAACAAGCCGAAGCAUUUGA.................... len:22 al:1
................................................GAGAACAAGCCGAAGCAUUc...................... len:20 al:1
................................................GAGAACAAGCCGAAGCAUU....................... len:19 al:3
.................................................AGgACAAGCCGAAGCAUU....................... len:18 al:1
.................................................AGAACAAGCCGAAGCAUUUGA.................... len:21 al:11
.................................................AGAACAAGCCGAAGCAUUUG..................... len:20 al:1
.................................................AGAACAAGCCGAAGCAUU....................... len:18 al:18
.................................................AGAACAAGCCGAAGCAUc....................... len:18 al:2
.................................................AGAACAAGCCGAAGCAUUUGAa................... len:22 al:1
..................................................GAACAgGCCGAAGCAUUUGA.................... len:20 al:4
..................................................GAACAAGCCGAAGCAUUUG..................... len:19 al:69
..................................................GAACAAGCCGAAGCAUaUGA.................... len:20 al:1
..................................................GAACAAGCCGAgGCAUUUGA.................... len:20 al:1
..................................................GAACAAaCCGAAGCAUUUGA.................... len:20 al:2
..................................................GAACAAGCCGAAGCAUUU...................... len:18 al:43
..................................................GgACAAGCCGAAGCAUUUGA.................... len:20 al:1
..................................................GAACAAGCCGAAGCAUUUGACa.................. len:22 al:1
..................................................GAACAAaCCGAAGCAUUUG..................... len:19 al:1
..................................................cAACAAGCCGAAGCAUUUGA.................... len:20 al:3
..................................................GAACAAGCCGAAGCAUUUGAu................... len:21 al:50
..................................................aAACAAGCCGAAGCAUUUG..................... len:19 al:1
..................................................GAgCAAGCCGAAGCAUUUGA.................... len:20 al:2
..................................................GAACAcGCCGAAGCAUUUGA.................... len:20 al:1
..................................................GAACAAGCCGAAGCAUUUGA.................... len:20 al:559
..................................................GAACAAGCCGAAGCAUUUGAa................... len:21 al:16
..................................................GAACAAGCCGAAGCAUUUGg.................... len:20 al:17
..................................................GAACAAGCCGAAGCAUUUGAuU.................. len:22 al:9
..................................................GAACAAGCCGAAGCAUUUGAaU.................. len:22 al:15
..................................................GAACAAGCCGuAGCAUUU...................... len:18 al:1
..................................................GAACgAGCCGAAGCAUUUGA.................... len:20 al:2
..................................................GAACgAGCCGAAGCAUUUG..................... len:19 al:1
..................................................GAACAAGCCGAAGCAUU....................... len:17 al:14
..................................................GAAuAAGCCGAAGCAUUUGA.................... len:20 al:1
..................................................GAgCAAGCCGAAGCAUUUG..................... len:19 al:2
..................................................GAACAAGCCGAAGCgUUUGA.................... len:20 al:2
..................................................GAACAgGCCGAAGCAUUU...................... len:18 al:1
..................................................GAACAAGCCGAAGCAUgU...................... len:18 al:1
..................................................GAACAAGCCGAAGCAcUUG..................... len:19 al:2
..................................................GAACAAGCCGAAGCAcUUGA.................... len:20 al:1
..................................................GAACAAGCCGAAGCAUUc...................... len:18 al:4
..................................................GuACAAGCCGAAGCAUUUGA.................... len:20 al:1
..................................................GAACAAGCCGAAGCAUUUGu.................... len:20 al:38
..................................................GAACAAGCCGgAGCAUUUG..................... len:19 al:2
..................................................GgACAAGCCGAAGCAUUUG..................... len:19 al:1
..................................................aAACAAGCCGAAGCAUUUGA.................... len:20 al:4
...................................................AACAAGCCGAAGCAUUUGAa................... len:20 al:1
...................................................AACAAGCCGAAGCAUUUGA.................... len:19 al:3
...................................................AACAAGCCGAAGCAUUUa..................... len:18 al:1
...................................................AACAAGCCGAAGCAUUUG..................... len:18 al:1
...................................................AACAAGCCGAAGCAUU....................... len:16 al:1
......................................................................CUUUUGUCUGCCAAUAUUA. len:19 al:1