Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_910:118720-118809 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_8074.ps.pdf
Locus Name: Cluster_8074
AUGAAGACUGGCGAUGCGAGUCCAAUGUUUCGGCUUGUUCCCGUUUUCGGGAACAAGCCGAAACAUUUGACUUUUGUCUGCCAAUAUACA
........((((((((.(((((.((((((((((((((((((((....)))))))))))))))))))).))))).)))).))))....... (-51.50)
....................UaCAAUGUUUCGGCUUGUUCCCG............................................... len:23 al:2
....................UCCAAUGUUUCGGCUUGUUCCCG............................................... len:23 al:7
.....................CCAAUGUUUCGGCUUGUUCCCG............................................... len:22 al:4
......................CAAUGUUUCGGCUUGUaCCCG............................................... len:21 al:4
......................CAAUGUUUCGGCUUGUUuCCG............................................... len:21 al:27
......................CAAUGUUUCGGCUUGaUCCCG............................................... len:21 al:2
......................CAAUGUgUCGGCUUGUUCCCG............................................... len:21 al:2
......................CAAUGUUUCGGCUgGUUCCCG............................................... len:21 al:4
......................CAAUGUUUCGGCUUGgUCCCG............................................... len:21 al:2
......................CAAUGUUUCGGCUcGUUCCCG............................................... len:21 al:99
......................CAAUGUaUCGGCUUGUUCCCG............................................... len:21 al:3
......................CAAUGUcUCGGCUUGUUCCCG............................................... len:21 al:108
......................CAAUGUUUCGGCUUGUUCCCGUc............................................. len:23 al:29
......................CAAUGUUUCGGCUUGUUCCCG............................................... len:21 al:28663
......................CAAUGUUUCGGCUUGUUCuCG............................................... len:21 al:29
......................CAAUGUUUaGGCUUGUUCCCG............................................... len:21 al:5
......................CAAUGUUUCGGCUUGUUCCCc............................................... len:21 al:6
......................CAAUGUUUCGGCUUGUUCCu................................................ len:20 al:44
......................CAAUGUUUCGGCUUGUUCCCu............................................... len:21 al:14
......................CAAUGUUUCGGCUUGUUCCCGUa............................................. len:23 al:16
......................CAgUGUUUCGGCUUGUUCCCGUU............................................. len:23 al:1
......................CAAUGUUUCGGCUUaUUCCCG............................................... len:21 al:23
......................CAAUGUUUCGGCUaGUUCCCG............................................... len:21 al:5
......................CAcUGUUUCGGCUUGUUCCCG............................................... len:21 al:28
......................CAAUGUUUuGGCUUGUUCCCGUU............................................. len:23 al:1
......................CAAUGUUUCGGCUUGUUCCaG............................................... len:21 al:91
......................CAAUGUUUCGGCUUuUUCCCG............................................... len:21 al:1
......................CAAUGUUUCGGCUUGUUCCgG............................................... len:21 al:5
......................CuAUGUUUCGGCUUGUUCCCG............................................... len:21 al:14
......................CAAUGUUUCGGCUUGUUCCCGUg............................................. len:23 al:2
......................CAAUGaUUCGGCUUGUUCCCG............................................... len:21 al:5
......................CAAUGUUUCGGCUUGcUCCCG............................................... len:21 al:93
......................CAAUGUUUCGGCUUGUUCCCGU.............................................. len:22 al:164
......................CAAUGUUUCuGCUUGUUCCCG............................................... len:21 al:5
......................CAAUGUUUCGGCUUGUcCCCGUU............................................. len:23 al:2
......................CAAUGUUUCGGCUUGUgCCCG............................................... len:21 al:2
......................CAAgGUUUCGGCUUGUUCCCG............................................... len:21 al:4
......................CAAUGUUUCGGCUUcUUCCCG............................................... len:21 al:1
......................CAAUGUUUCGGCUUGUUCCCGg.............................................. len:22 al:6
......................CAAaGUUUCGGCUUGUUCCCG............................................... len:21 al:2
......................CAAUGcUUCGGCUUGUUCCCG............................................... len:21 al:131
......................CAAUGUUUCGGCUUGUUCCa................................................ len:20 al:4
......................CAAUGUUUCGGCcUGUUCCCG............................................... len:21 al:96
......................CAAUGUUUCGGCUUGUUCCCGUUU............................................ len:24 al:6
......................CAAUGUUcCGGCUUGUUCCCGU.............................................. len:22 al:1
......................CAAUGcUUCGGCUUGUUCCCGUU............................................. len:23 al:2
......................CAAUGUUUCaGCUUGUUCCCG............................................... len:21 al:24
......................CAgUGUUUCGGCUUGUUCCCG............................................... len:21 al:93
......................CgAUGUUUCGGCUUGUUCCCGUU............................................. len:23 al:1
......................CAAUGUUUCGGCUUGUUCCCGUUg............................................ len:24 al:1
......................CAAUGUUUgGGCUUGUUCCCG............................................... len:21 al:1
......................CAAUGUUUCGGCUcGUUCCCGUU............................................. len:23 al:3
......................CAAUGUUUCGGCUUGUUCCCGUaUU........................................... len:25 al:1
......................CAAUGgUUCGGCUUGUUCCCG............................................... len:21 al:6
......................CAAUGUUUCGGCaUGUUCCCG............................................... len:21 al:5
......................CAAUGUUUCGGCUUGUUCa................................................. len:19 al:1
......................CAAUGUUUCGGCUUGUUCaCG............................................... len:21 al:63
......................CAAUGUUUCGuCUUGUUCCCG............................................... len:21 al:2
......................CAAUGUUUCaGCUUGUUCCCGU.............................................. len:22 al:1
......................CAAUGUUcCGGCUUGUUCCCG............................................... len:21 al:72
......................CAAUGUUUCGGCUUGUUCCCGUU............................................. len:23 al:253
......................CAAUGUUUCGGCUUGUcCCCG............................................... len:21 al:94
......................CAAUGUUUCaGCUUGUUCCCGUU............................................. len:23 al:1
......................CAAcGUUUCGGCUUGUUCCCG............................................... len:21 al:78
......................CAAUGUUaCGGCUUGUUCCCG............................................... len:21 al:7
......................CAAUGUUUCGcCUUGUUCCCG............................................... len:21 al:4
......................CAAUGUUUCGGCcUGUUCCCGUU............................................. len:23 al:5
......................CAAUGUUUCGGCUUGUUCu................................................. len:19 al:4
......................CAAUaUUUCGGCUUGUUCCCG............................................... len:21 al:12
......................CAAUGUUUCGGCUUGUUCCuGU.............................................. len:22 al:1
......................CAAUGUUUCGGCUUGcUCCCGUU............................................. len:23 al:1
......................CAAUGUUUCGGCUUGUUCCCGc.............................................. len:22 al:16
......................CAAUGUUUCGGCUUGUUCCCGUUUUCGGG....................................... len:29 al:1
......................CAAUGUUUCGGCUUGUUCCC................................................ len:20 al:128
......................CcAUGUUUCGGCUUGUUCCCG............................................... len:21 al:10
......................CAAcGUUUCGGCUUGUUCCCGUU............................................. len:23 al:1
......................CAAUGUUUCGGuUUGUUCCCG............................................... len:21 al:31
......................CAAUGUUUuGGCUUGUUCCCG............................................... len:21 al:32
......................CAAUGUUUCGGCUUGUUuCCGUU............................................. len:23 al:1
......................CAAUGUUUCGGCgUGUUCCCG............................................... len:21 al:4
......................CAAUGUUUCGaCUUGUUCCCG............................................... len:21 al:43
......................CgAUGUUUCGGCUUGUUCCCG............................................... len:21 al:109
......................CAAUGUUgCGGCUUGUUCCCG............................................... len:21 al:4
......................CAAUGUUUCGGCUUGUUCCuG............................................... len:21 al:45
......................CAuUGUUUCGGCUUGUUCCCG............................................... len:21 al:6
......................CAAUGUUUCGGCUUGUUCCaGU.............................................. len:22 al:1
......................CAAUGUUUCGGCUUGUUCC................................................. len:19 al:16
......................CAAUGUUUCGGCUUGUUCCCGUgU............................................ len:24 al:1
......................CAAUGUUUCGGaUUGUUCCCG............................................... len:21 al:3
......................CAAUGUUUCGGCUUGUUCCCGcU............................................. len:23 al:1
.......................AAUGUUUCGGCUUGUUCCCGUU............................................. len:22 al:2
.......................AAUGUUUCGGCUUGUUCCCG............................................... len:20 al:1
.........................UGUUUCGGCUUGUUCCCGUUUcCGGGAAC.................................... len:29 al:1
.........................UGUUUCGGCUUGUUCCCGUUUUCGGGAACA................................... len:30 al:63
.........................UGUUUCGGCUUGUUCCCGUUUcCGGGAACA................................... len:30 al:18
.........................UGUUUCGaCUUGUUCCCGUUUUCGGGA...................................... len:27 al:1
.........................UGUUUCGGCUUGUUCCCGUUUUCGGGAACu................................... len:30 al:24
.........................UGUUUCGGCUUGUUCCCGUUUUCGGGA...................................... len:27 al:1
.........................UGUUUCGaCUUGUUCCCGUUUUCGGGAACA................................... len:30 al:1
.........................UGUUUCGGCUUGUUCCCGUUUUCGGGAAC.................................... len:29 al:4
.........................UGUUUCGGCUUGUUCCCGUUUUCGGGAA..................................... len:28 al:2
.........................UGUUUCGGCUUGUUCCCGUUUUCGGGAAu.................................... len:29 al:18
.........................UGUUUCGGCUUGUUCCCGUUUUCGGGAACc................................... len:30 al:1
.........................UGUUUCGGCUUGUUCCCGUUUUCGGGAACAu.................................. len:31 al:1
.........................UGUUUCGGCUUGUUCCCGUU............................................. len:20 al:2
..........................GUUUCGGCUUGUUCCCGUUUUCGGGAACu................................... len:29 al:1
...........................UUUCGGCUUGUUCCCGUUUUCGGGAAuA................................... len:28 al:1
...........................UUUCGGCUUGUUCCCGUUUUCGGGAAu.................................... len:27 al:2
...........................UUUCGGCUUGUUCCCGUUUcCGGGAAC.................................... len:27 al:1
...........................UUUCGGCUUGUUCCCGUUUcCGGGAACA................................... len:28 al:1
.........................................CGUUUUCGGGAACAAGCC............................... len:18 al:2
................................................GGGAACAAGCCGAAACAUUUGA.................... len:22 al:1
.................................................GGAACAAGCCGAAACAUUUGAuU.................. len:23 al:2
.................................................GGAACAAGCCGAAACAUUUGAaU.................. len:23 al:6
.................................................GGAACAAGCCGAAACAUUUGA.................... len:21 al:5
..................................................GAACAAGCCGAAACAUUUGA.................... len:20 al:2