Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_613:156453-156546 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_6356.ps.pdf
Locus Name: Cluster_6356
CAGACAUGUAUUUUCAUUAGCAGCUGCAAUGGCUUAGGAAAAAGUUAAUAUUUUCCUAAGUUGUUAUAGCUGUUGGUGUUAAUAUUCUGUUCAG
((((...(((((..((((((((((((.(((((((((((((((........))))))))))))))).))))))))))))..)))))))))..... (-38.90)
CAGACAUGUAUUUUCAUU............................................................................ len:18 al:1
CAGACAUGUAUUUUCAUUAG.......................................................................... len:20 al:6
CAGACAUGUAUUUUCAUUAa.......................................................................... len:20 al:3
CAGACAUGUAcUUUCAUUAG.......................................................................... len:20 al:1
....................CAGCUGCAAUGGCUUAGGAAA..................................................... len:21 al:7
....................CAGCUGCAAUGGCUUAGGAAu..................................................... len:21 al:5
....................CAGCUGCAAUGGCUUAGGAAAAAG.................................................. len:24 al:1
....................CAGCUGCAAUGGCUUAGGAAuA.................................................... len:22 al:1
....................CAGCUGCAAUGGCUUAGGAAAAAGUc................................................ len:26 al:1
....................CAGCUGCAAUGGCUUAGGAAAAAGU................................................. len:25 al:1
....................CAGCUGCAAUGGCUUAGGAAAA.................................................... len:22 al:20
....................CAGCUGCAAUGGCUUAGGAAAAAGUU................................................ len:26 al:18
....................CAGCUGCAAUGGCUUAGGAAAgAGUU................................................ len:26 al:2
....................CAGCUGCAAUGGCUUAGGAAAg.................................................... len:22 al:1
....................CAGCUGCAAUGGCUUAGGAAc..................................................... len:21 al:1
....................CAGCUGCAAUGGCUUAGGAAAAAGUUA............................................... len:27 al:2
....................CAGCUGCAAUGGCUUAGGAgAA.................................................... len:22 al:1
....................CAGCUGCAAUGGCUUAGGAAAc.................................................... len:22 al:1
....................CAGCUGCAAUGGCUUAGGAAAAc................................................... len:23 al:1
....................CAGCUGCAAUGGCUUAGGAAAAu................................................... len:23 al:12
....................CAGCUGCAAUGGCUUAGGAAAAA................................................... len:23 al:1
.....................AGCUGCAAUGGCUUAGGAAAA.................................................... len:21 al:1
.....................AGCUGCAAUGGCUUAGGAu...................................................... len:19 al:1
.....................AGCUGCAAUGGCUUAGGAAAAAGUUAAUAUU.......................................... len:31 al:2
.....................AGCUGCAAUGGCUUAGGAA...................................................... len:19 al:1
......................GCUGCAAUGGCUUAGGAAu..................................................... len:19 al:1
.......................CUGCAAUGGCUUAGGAAAAAGUU................................................ len:23 al:1
........................UGCAAUGGCUUAGGAAAA.................................................... len:18 al:2
...........................AAUGGCUUAGGcAAAAGU................................................. len:18 al:1
...........................................GUUAAUAUUUUCCUAAGUUGUUAUAGCUGU..................... len:30 al:1
...........................................GUUAAUAUUUUCCUAAGUUGUUAUAGCUGUc.................... len:31 al:2
...........................................GUUAAUgUUUUCCUAAGUUGUUAUAGCUGUU.................... len:31 al:1
...........................................GUUAAUAUUUUCCUAAGUUGUUgUAGCUGUU.................... len:31 al:38
...........................................GUUAAUAUUUUCCUAAGUUGcUAUAGCUGUU.................... len:31 al:1
...........................................GUUAAUAUUUUCCUAAGUUGUUAUAGCUGUU.................... len:31 al:46
...........................................GUUAAUAUUUUCCUAAGUUGUUAUAGCUGUg.................... len:31 al:1
...........................................GUUAAUAUUUUCCUAAGUUGUUAUgGCUGUU.................... len:31 al:1
............................................UUAAUAUUUUCCUAAGUUGUUgUAGCUGUU.................... len:30 al:4
.............................................UAAUAUUUUCCUAAGUUGUUgUAGCUGUU.................... len:29 al:9
..............................................AAUAUUUUCCUAAGUUGUUgUAGCU....................... len:25 al:1
..............................................AAUAUUUUCCUAAGUUGUUgUAGCUGU..................... len:27 al:1
..............................................AAUAUUUUCCUAAGUUGUUAUAGCUGUU.................... len:28 al:2
..............................................AAUAUUUUCCUAAGUUGUUgUAGCUGUU.................... len:28 al:6
...............................................AUAUUUUCCUAAGUUGUUgUAGCUGUU.................... len:27 al:12
................................................UAUUUUCCUAAGUUGUUgUAGCUGUU.................... len:26 al:4
.................................................AUUUUCCUAAGUUGUUgUAGCUGUU.................... len:25 al:2
.................................................AUUUUCCUAAGUUGUUAUAGCUGUU.................... len:25 al:5
..................................................UUUUCCUAAGUUGUUgUAGCUGUU.................... len:24 al:1
...................................................UUUCCUAAGUUGUUAUAGCUGU..................... len:22 al:1
....................................................cUCCUAAGUUGUUAUAGCUGUU.................... len:22 al:7
....................................................UUCCUAAGUUaUUAUAGCUGU..................... len:21 al:1
....................................................UUCCUgAGUUGUUAUAGCUGUU.................... len:22 al:13
....................................................UUCCUAAGUUGUUAUAGu........................ len:18 al:15
....................................................UcCCUAAGUUGUUAUAGCUGU..................... len:21 al:3
....................................................UUCCUAcGUUGUUAUAGCUGU..................... len:21 al:1
....................................................UUCCUAAGUUGUUgUAGCUGUU.................... len:22 al:9113
....................................................UUCCUAAGUUGUUAUAGCUGUUGc.................. len:24 al:1
....................................................UUCCUAAGUUGUUAUAGCUGUUGa.................. len:24 al:1
....................................................UUCCUAAGUUGUUAUAaCUGUU.................... len:22 al:3
....................................................UcCCUAAGUUGUUAUAGCUGUU.................... len:22 al:19
....................................................UUCCUAAGUUGUUAUAuCUGUU.................... len:22 al:1
....................................................UUCCUAAGUUGUUgUAGC........................ len:18 al:158
....................................................UUCCUAAGUUGUUgUA.......................... len:16 al:1
....................................................UUCCUAAGUUGUUAUAGCUG...................... len:20 al:19
....................................................UUCCUAAGUUGUUAUAaCU....................... len:19 al:1
....................................................UUCCUAAGUUGUUAUAGCUGUU.................... len:22 al:2756
....................................................UUCCUAAGUUGUUAUAGCg....................... len:19 al:2
....................................................UUCCUAAGUUGUUAUAGCUuUU.................... len:22 al:2
....................................................UUCCUAAGUUGUUuUAGCUGU..................... len:21 al:1
....................................................UUCCUAAGUUGUUAUcGCUGU..................... len:21 al:1
....................................................UUCCcAAGUUGUUAUAGCUGUU.................... len:22 al:5
....................................................UUCCUAAGUUGUUgUAGCUGU..................... len:21 al:287
....................................................UUCCUAAGUUGUUAUAGCUGa..................... len:21 al:5
....................................................UUCCUAAGUUGcUAUAGCUGUU.................... len:22 al:2
....................................................UUCCUAAGUUGUUAUAGCU....................... len:19 al:206
....................................................aUCCUAAGUUGUUAUAGCUGUU.................... len:22 al:2
....................................................UUCCUAAGUUGUUAUAGCUGU..................... len:21 al:223
....................................................UUCCUAAGUUGUcAUAGCUGU..................... len:21 al:1
....................................................UUCCUAAGUUGUaAUAGCUGUU.................... len:22 al:1
....................................................UUCCUAAGUUaUUAUAGCUGUU.................... len:22 al:1
....................................................UUCCUAAGUUGUUAU........................... len:15 al:1
....................................................UUCCUAAGcUGUUAUAGCUGUU.................... len:22 al:4
....................................................UUCCUAAGUUGUUAUAGCUGUUa................... len:23 al:45
....................................................cUCCUAAGUUGUUAUAGCUGU..................... len:21 al:2
....................................................cUCCUAAGUUGUUAUAGCUG...................... len:20 al:1
....................................................UUCCUAAGUUGUUAUAGCUGUc.................... len:22 al:243
....................................................UUCCUAAGUUGUUAUcGCUGUU.................... len:22 al:1
....................................................UUCCUAAGUUGUUuUAGCU....................... len:19 al:1
....................................................UUCCUAAGUUGUUAUAGCUGUUu................... len:23 al:778
....................................................UUCCUAgGUUGUUAUAGCUGUU.................... len:22 al:15
....................................................UUCCUAAGUUGUUAUAGCUGgU.................... len:22 al:18
....................................................UUCCUAAGUcGUUAUAGCUGUU.................... len:22 al:14
....................................................UUCCUAAGUUGUUgUAGCUGUUG................... len:23 al:5
....................................................UUCCUAAGUUGUUAUA.......................... len:16 al:3
....................................................UUCCUAAGUUGUUAUgGCUGU..................... len:21 al:2
....................................................UUCCUAAGUUGcUAUAGCU....................... len:19 al:1
....................................................UUCCUAgGUUGUUAUAGCUGU..................... len:21 al:2
....................................................UUCCUAAGUUGUUAUAGCUGUUGu.................. len:24 al:1
....................................................UUCCUAAGUUGUUAUAGCUGUa.................... len:22 al:45
....................................................UUCCUAAGUUGUUAUAGCUGaU.................... len:22 al:8
....................................................UaCCUAAGUUGUUAUAGCUGUU.................... len:22 al:1
....................................................UUCCUcAGUUGUUAUAGCUGU..................... len:21 al:1
....................................................UUCCUAAaUUGUUAUAGCUGUU.................... len:22 al:2
....................................................UUCCUAAGUUGUUAUAGCUGUg.................... len:22 al:21
....................................................UUCCUAAGUUGUUAUAG......................... len:17 al:1
....................................................UUCCUAAGUUGUcAUAGCUGUU.................... len:22 al:6
....................................................UUCCUAAGUUGUUgUAGCU....................... len:19 al:587
....................................................UUCCUAAGUUGUUAUAGC........................ len:18 al:39
....................................................UUCCUAAGUUGUUAUgGCUGUU.................... len:22 al:10
....................................................UUCCUgAGUUGUUAUAGCU....................... len:19 al:1
....................................................UcCCUAAGUUGUUAUAGCU....................... len:19 al:1
....................................................UUCuUAAGUUGUUAUAGCUGUU.................... len:22 al:1
....................................................UUCCUAAGUUGUUAUgGCU....................... len:19 al:11
....................................................UUCCUAAGUUGUUAUAGCUGg..................... len:21 al:8
....................................................UUCCUAAGUUGUUAUAGCUGcU.................... len:22 al:8
....................................................UUCCUAAGUUGUUAUuGCUGUU.................... len:22 al:4
....................................................UUCCUAAGUUGUUAUAGuUGUU.................... len:22 al:5
....................................................UUCCUAAGUUGUUAUAGCUGUUc................... len:23 al:66
....................................................UUCCUAAGUUGUUAUAGCa....................... len:19 al:5
....................................................UUCCUAAGUUGUUAUAGCUGc..................... len:21 al:30
....................................................UUCCcAAGUUGUUAUAGCUGU..................... len:21 al:1
....................................................UUCCUAAGUUGUUAcAGCUGUU.................... len:22 al:3
....................................................UUCCUAAGUUGUUAUAGuUGU..................... len:21 al:2
....................................................UUCCUAAGUUGUUgUAGCUG...................... len:20 al:43
....................................................UUCCUAAGUUGUUAUAGCc....................... len:19 al:24
....................................................UUCuUAAGUUGUUAUAGCU....................... len:19 al:1
....................................................UUCCUAAGUUGUUAUAGCUGUUG................... len:23 al:3
.....................................................UCCUAAGUUGUUAUAGCUGUc.................... len:21 al:1
.....................................................UCCUAAGUUGUUAUAGCUGUU.................... len:21 al:7
.....................................................UCCUAAGUUGUUgUAGCUGUU.................... len:21 al:18
.....................................................UCCUAAGUUGUUAUAGCUGUUu................... len:22 al:1
.....................................................UCCUAAGUUGUUAUAGCUGU..................... len:20 al:1
......................................................CCUAAGUUGUUAUAGCUGUU.................... len:20 al:2
......................................................CCUAAGUUGUUgUAGCUGU..................... len:19 al:4
......................................................CCUAAGUUGUUAUAGCUGU..................... len:19 al:1
......................................................CCUAAGUUGUUAUAGCUGUUu................... len:21 al:1
......................................................CCUAAGUUGUUgUAGC........................ len:16 al:1
......................................................CCUAAGUUGUUgUAGCUGUU.................... len:20 al:16
.......................................................CUAAGUUGUUAUAGCUGUUu................... len:20 al:2
.......................................................CUAAGUUGUUgUAGCUGUU.................... len:19 al:4
..........................................................................GGUGUUAAUAUUCUGUUCAG len:20 al:5
..........................................................................GGUGUUAAUAUUCUGUUC.. len:18 al:2
..........................................................................GGUGUUAAUAUUCUGUUCA. len:19 al:1