Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_590:199803-199896 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_6236.ps.pdf
Locus Name: Cluster_6236
GGAUUAAGAAGCUUACGUUUCGCGCGCUAGUCCUUUGGUAAAGCGUUUCGUUUCACGAAUGGCUAGUGCACGAUACGUAGGCUUGACCUUUCAU
(((.....((((((((((.(((.(((((((.((.((.((.(((((...))))).)).)).))))))))).))).)))))))))).....))).. (-41.60)
..................UUCGCGCGCUAGUCCUUUGGUAAAGu.................................................. len:26 al:1
..................UUCGCGCGCUAGUCCUUUGGc....................................................... len:21 al:1
...................UCGCGCGuUAGUCCUUUGGUAAA.................................................... len:23 al:1
...................UCGCGCGCUAGUCCUUUGGUAAA.................................................... len:23 al:1
....................CGCGCGCUAGUCCUUUGGg....................................................... len:19 al:1
....................CGCGCGCUAGUCCUUUGGUAAAa................................................... len:23 al:2
....................CGCGCGCUAGUCCUUUGGUgA..................................................... len:21 al:1
....................CGCGCGCUAGUCCUUUGGUAAAG................................................... len:23 al:97
....................CGCGCGCUAGUCCUUUGGUu...................................................... len:20 al:7
....................CGCGCGCUAGUCCcUUGGU....................................................... len:19 al:1
....................CGCGCGCUAGUCCUUUGGUAAAGC.................................................. len:24 al:16
....................CGCGCGCUAGUCCUUUGGUAu..................................................... len:21 al:7
....................CGCGCGCUAGUCCUU........................................................... len:15 al:4
....................CGCGCGCUAGUCCUUUGGgAAAGC.................................................. len:24 al:1
....................CGCGCGCUAGUCCUUUGGUAuA.................................................... len:22 al:2
....................CGCGCGCUgGUCCUUUGGUAAAG................................................... len:23 al:2
....................CGCGCGCUAGUCCUUUGGUAAA.................................................... len:22 al:89
....................CGCGCGCUAGUCCUUUGGUAAAGa.................................................. len:24 al:1
....................CGCGCGCUAGUCCUUUGGUAAc.................................................... len:22 al:4
....................CGCGCGCUAGUCCUUUGG........................................................ len:18 al:14
....................CGCGCGCUAGUCCUUUGGU....................................................... len:19 al:45
....................CGCGCGCUAGUCCUUUGGa....................................................... len:19 al:2
....................CGCGCGCUAGUCCUUUGGUAAAGu.................................................. len:24 al:21
....................CGCGCGCUAGUCCUUUGGUg...................................................... len:20 al:1
....................CGCGuGCUAGUCCUUUGGUAA..................................................... len:21 al:1
....................CGCGCGCUAGUCCUUUGGUAA..................................................... len:21 al:38
....................CGuGCGCUAGUCCUUUGGUAAA.................................................... len:22 al:1
....................CGCGCGCUAGUCCUUUGGc....................................................... len:19 al:7
....................CGCGCGCUAGUCCUUUGGUAAu.................................................... len:22 al:7
....................CGCGCGCUAGUuCUUUGGUAAA.................................................... len:22 al:1
....................CGCGCGCUAGUCCUUUGGUAAAu................................................... len:23 al:8
....................CGCGCGCUAGUCCUUUGGUA...................................................... len:20 al:29
....................CGCGCaCUAGUCCUUUGGUAA..................................................... len:21 al:1
....................CGCGCGCUAaUCCUUUGGUAAAGC.................................................. len:24 al:1
.....................GCGCGCUAGUCCUUUGGUAAAa................................................... len:22 al:1
.....................GCGCGCUAGUCCUUUGGUAAAG................................................... len:22 al:6
.....................GCGCGCUAGUCCUUUGGUA...................................................... len:19 al:11
.....................GCGCGCUAGUCCUUUGGUAAgG................................................... len:22 al:1
.....................GCGCGCUAGUCCUUUGGUu...................................................... len:19 al:3
.....................GCGCGCUAGUCCUUUG......................................................... len:16 al:1
.....................GCGCGCUAGUCCUUUGGUAAu.................................................... len:21 al:9
.....................GCcCGCUAGUCCUUUGGUA...................................................... len:19 al:2
.....................GCGCGCUAGUCCUUUGGU....................................................... len:18 al:19
.....................GCaCGCUAGUCCUUUGGUA...................................................... len:19 al:1
.....................GCGCGCUAGUCCUUUGGc....................................................... len:18 al:2
.....................GCGCGCUAGUCCcUUGGU....................................................... len:18 al:1
.....................GCGCGCUAGUCCUUUGGUAAAGu.................................................. len:23 al:4
.....................GuGCGCUAGUCCUUUGGUAA..................................................... len:20 al:1
.....................GCGCGCUAGUCCUUUGGUAc..................................................... len:20 al:1
.....................GuGCGCUAGUCCUUUGGU....................................................... len:18 al:1
.....................GCGCGCUAGUCCUUUGGUc...................................................... len:19 al:2
.....................GCGCGCUAGUCCUUUGGUAAA.................................................... len:21 al:23
.....................GCGCGCUAGUCCUUUGGUAu..................................................... len:20 al:7
.....................GCGCGCUAGUCCUUUGGUAAAu................................................... len:22 al:4
.....................GCGCGCUAGUCCUUUGGUAA..................................................... len:20 al:24
.....................cCGCGCUAGUCCUUUGGU....................................................... len:18 al:1
......................CGCGCUAGUCCUUUGGUAAuG................................................... len:21 al:1
......................CGCGCUAGUCCUaUGGUAAA.................................................... len:20 al:1
......................CGCGCcAGUCCUUUGGUAAA.................................................... len:20 al:1
......................CGCGCUAGUCCUUUGGUAAA.................................................... len:20 al:37
......................CGCGCUAGUCCUUUGGUA...................................................... len:18 al:10
......................CGCGCUAGUCCUUUGGUAAAGC.................................................. len:22 al:21
......................CGCcCUAGUCCUUUGGUAAA.................................................... len:20 al:1
......................CGCGCUAGUCCUUUGGUAAAGu.................................................. len:22 al:5
......................CGCGCUAGUCCUUUGGUAAu.................................................... len:20 al:1
......................CGCGCUAGUCCUUUGGUAAAG................................................... len:21 al:39
......................CGCGCUAGUCCUUUGGUuAA.................................................... len:20 al:1
......................CGCGCUAGUCCUUUGGUAA..................................................... len:19 al:10
......................CGCGuUAGUCCUUUGGUA...................................................... len:18 al:1
......................CaCGCUAGUCCUUUGGUAAA.................................................... len:20 al:2
......................CGCGCUAGUCCUUUGGUAAg.................................................... len:20 al:1
.......................GCGCUAGUCCUUUGGUAA..................................................... len:18 al:3
..........................................GCGUUUCGUUUCACGAAUGGCUAGUGCACG...................... len:30 al:4
..........................................GCGUUUCGUUUaACGAAUGGCUAGUGCACG...................... len:30 al:2
...........................................CGUUUCGUUUaACGAAUGGCUAGUGCACGAU.................... len:31 al:4
...........................................CGUUUCGUUUCACGAAUGGCUAGUGCACGA..................... len:30 al:1
...........................................CGUUUCGUUUaACGAAUGGCUAGUGCACG...................... len:29 al:6
...........................................CGUUUCGUUUCACGAAUGGCUAGUGCACG...................... len:29 al:2
...........................................uGUUUCGUUUCACGAAUGGCUAGUGCACGAU.................... len:31 al:1
...........................................CGUUUCGUUUCACGAAUGGCUAGUGCACGuU.................... len:31 al:2
...........................................CGUUUCGUUUCACGAAUGGCUAGUGCACu...................... len:29 al:1
...........................................CGUUUCGUUUCACGAAUGGCUAGUG.......................... len:25 al:1
...........................................CGUUUCGUUUCACGAAUGGCUAGUGCACGAU.................... len:31 al:1
...........................................CGUUUCGUUUCACGAAUGGCUAGUGCACGgU.................... len:31 al:1
............................................GUUUCGUUUaACGAAUGGCUAGUGCACG...................... len:28 al:4
............................................GUUUCGUUUaACGAAUGGCUAGUGCACGAU.................... len:30 al:1
............................................GUUUCGUUUCACGAAUGGCUAGUGCACG...................... len:28 al:1
............................................GUUUCGUUUgACGAAUGGCUAGUGCACG...................... len:28 al:1
.................................................GUUUCACGAAUGGCUAGUGCACGAc.................... len:25 al:1
.................................................GUUUaACGAAUGGCUAGUG.......................... len:19 al:1
.................................................GUUUCACGAAUGGCUAGUGCACGA..................... len:24 al:2
.................................................GUUUaACGAAUGGCUAGUGCACG...................... len:23 al:3
.................................................GUUUCACGAAUGGCUAGUGCACGAU.................... len:25 al:1
..................................................UUUaACGAAUGGCUAGUGCACGA..................... len:23 al:1
..................................................cUUCACGAAUGGCUAGUGCACG...................... len:22 al:2
..................................................UUUCACGAAUGGCUAGUGCACGAUu................... len:25 al:1
..................................................UUUCACGAAUGGCUAGUGCACG...................... len:22 al:62
..................................................UUUaACGAAUGGCUAGUGCACG...................... len:22 al:473
..................................................UUUCACGAAUGGCUAGUGCAC....................... len:21 al:3
..................................................UUUaACGAAUGGCUAGUG.......................... len:18 al:12
..................................................UUUaACGAAUGGCUAGUGCACGAU.................... len:24 al:1
..................................................UUUCACGAAUGGCUAGUGCACGAU.................... len:24 al:3
..................................................UUUaACGAAUGGCUAGUGC......................... len:19 al:103
..................................................UUUCACGAAUGGCUAGUGCACGu..................... len:23 al:1
..................................................UUUCACGAAUGGCUAGUGC......................... len:19 al:6
..................................................UUUCgCGAAUGGCUAGUGCACG...................... len:22 al:1
..................................................UUUCACGAAUGGCUuGUGCACG...................... len:22 al:1
..................................................UUUCACGAAUGGCUAGUGCACu...................... len:22 al:92
..................................................UUUCACGAAUGGCUAGUGCA........................ len:20 al:1
..................................................UUUCACGAAUGGCUAGUGCACa...................... len:22 al:13
..................................................UUUCACGAAUGGCUAGUGu......................... len:19 al:1
..................................................UUUCACGAAUGGCUAGU........................... len:17 al:3
..................................................UUUCACGAAUGGCUAGUGCACc...................... len:22 al:10
..................................................UUUaACGAAUGGCUAGUGCAC....................... len:21 al:32
..................................................UUUCACGAAUGGCUAGUGCAu....................... len:21 al:1
..................................................UUUgACGAAUGGCUAGUGCACG...................... len:22 al:1
..................................................UUUaACGAAUGGCUAGU........................... len:17 al:2
..................................................UUUCACGAAUGGCUAGUGCgCG...................... len:22 al:1
..................................................UUUaACGAAUGGCUAGUGCA........................ len:20 al:17
...................................................UUCACGAAUGGCUAGUGCACGAUc................... len:24 al:1
...................................................UUCACGAAUGGCUAGUGCACGAU.................... len:23 al:3
...................................................UUCACGAAUGGCUAGUGC......................... len:18 al:1
...................................................UUCACGAAUGGCUAGUGCACu...................... len:21 al:3
...................................................UUCACGAAUGGCUAGUGCgCGAU.................... len:23 al:1
...................................................UUaACGAAUGGCUAGUGCACGAU.................... len:23 al:3
...................................................UUCACGAAUGGCUAGUGCACGc..................... len:22 al:1
...................................................UUCACGAAUGGCUAGUGCACG...................... len:21 al:1
...................................................UUaACGAAUGGCUAGUGC......................... len:18 al:1
...................................................cUCACGAAUGGCUAGUGCACGA..................... len:22 al:1
...................................................UUCACGAAUGGCUAGUGCACGAUu................... len:24 al:13
...................................................UUCACGAAUGGCUAGUGCACGu..................... len:22 al:1
...................................................UUaACGAAUGGCUAGUGCACG...................... len:21 al:11
...................................................UUCACGAAUGGCUAGUGCACGA..................... len:22 al:1
...................................................UUaACGAAUGGCUAGUGCA........................ len:19 al:1
....................................................UCACGAAUGGCUuGUGCACGAU.................... len:22 al:2
....................................................UCACGgAUGGCUAGUGCACG...................... len:20 al:1
....................................................UCACGgAUGGCUAGUGCACGAU.................... len:22 al:6
....................................................UgACGAAUGGCUAGUGCACGAU.................... len:22 al:5
....................................................UCACGAAUGGCUAGUGCgCGAUA................... len:23 al:5
....................................................UuACGAAUGGCUAGUGCACGAUA................... len:23 al:1
....................................................UCACGAAUGGCUgGUGCACG...................... len:20 al:1
....................................................UCACGAAUGGCUAGUGCACc...................... len:20 al:4
....................................................UCACGAAcGGCUAGUGCACGAUA................... len:23 al:1
....................................................UCACGAAUGGCUAGUGCAgGAU.................... len:22 al:1
....................................................UCACGgAUGGCUAGUGCACGAUA................... len:23 al:1
....................................................UCACGAAUGGCUAGUGCAC....................... len:19 al:73
....................................................UCACGAAUGGCUAGUGCACGAa.................... len:22 al:33
....................................................UCACGAAUGGCUAGUGCACa...................... len:20 al:32
....................................................UCACGAAUGGCUAGUGCACGAg.................... len:22 al:10
....................................................UCACGAAUGGCUAGUGCgCG...................... len:20 al:2
....................................................UCACGAAUGGCUAGg........................... len:15 al:1
....................................................UCuCGAAUGGCUAGUGCACGA..................... len:21 al:1
....................................................UCACGAAUGGCUAGUGCACGu..................... len:21 al:8
....................................................UCACGAAUGGCUcGUGCACGAU.................... len:22 al:1
....................................................UCACGAAUGGCUAGUGCACGgUA................... len:23 al:1
....................................................UCACGAAUGGCUAGUaCACGAU.................... len:22 al:4
....................................................UCACGAAUGGCUAaUGCACGAU.................... len:22 al:2
....................................................UCACGAAUGGCUAGUGCAuGAU.................... len:22 al:2
....................................................UCACGAAcGGCUAGUGCACGAU.................... len:22 al:4
....................................................UgACGAAUGGCUAGUGCACG...................... len:20 al:2
....................................................UCACGAAUGGCUgGUGCACGA..................... len:21 al:2
....................................................UCACGAAUGGCUAGUGCg........................ len:18 al:3
....................................................UCgCGAAUGGCUAGUGCACGAUA................... len:23 al:1
....................................................UCACGAAUGGCUAGU........................... len:15 al:17
....................................................UuACGAAUGGCUAGUGCACG...................... len:20 al:1
....................................................UCACGAAUGGCUAGUGCACGAUA................... len:23 al:207
....................................................UCgCGAAUGGCUAGUGCACGAU.................... len:22 al:13
....................................................UCcCGAAUGGCUAGUGCACGAU.................... len:22 al:1
....................................................UCACGAAUGGCUgGUGCACGAU.................... len:22 al:2
....................................................UCACGAAUGGCUAGUGCACaA..................... len:21 al:1
....................................................UCACGAAUGGCUgGUGCACGAUA................... len:23 al:7
....................................................UCACGAAUGGaUAGUGCACG...................... len:20 al:1
....................................................UCACGAAUGGCUuGUGCAC....................... len:19 al:1
....................................................UCACGAAUGGCgAGUGCACGAU.................... len:22 al:1
....................................................UCACGAAUGGCUAGUGCACu...................... len:20 al:31
....................................................UCACGAAUGGCUAGUGCACGAUAC.................. len:24 al:5
....................................................UCACGAAUGGCUAGUGCgC....................... len:19 al:1
....................................................UCACGAAUGGCcAGUGCACGAU.................... len:22 al:5
....................................................UaACGAAUGGCUAGU........................... len:15 al:1
....................................................UCACGAAUGGCUAGUGCACG...................... len:20 al:104
....................................................cCACGAAUGGCUAGUGCACGAUA................... len:23 al:1
....................................................UCACGAAUGGCUAGUGCcCGAU.................... len:22 al:1
....................................................UCACGAAUGGCUAGUGCAuG...................... len:20 al:2
....................................................UCACGAAUGGCUAGUGCACGA..................... len:21 al:87
....................................................cCACGAAUGGCUAGUGCACGAU.................... len:22 al:10
....................................................UCACGAAUGGCUAGUGCACGAUAu.................. len:24 al:45
....................................................UCACGAAUGGCUAGUGu......................... len:17 al:2
....................................................UCACGAAUaGCUAGUGCACGAU.................... len:22 al:1
....................................................UCACGAAUGGCUAGUGCgCGAU.................... len:22 al:12
....................................................UCACGAAUGGCUAGUGCgCGA..................... len:21 al:1
....................................................UCACGAAUGGCUAGUGCACGAUuC.................. len:24 al:5
....................................................UCACGAAUGaCUAGUGCACGAU.................... len:22 al:4
....................................................aCACGAAUGGCUAGUGCACGAUA................... len:23 al:1
....................................................UCACGAAUGGCUAGUGCAu....................... len:19 al:8
....................................................UCACGAAUGGCUAGUGCA........................ len:18 al:14
....................................................UCACGAAUGGCUAGUGCACGAU.................... len:22 al:1674
....................................................UCACGAAUGGCUAGaGCACGAU.................... len:22 al:2
....................................................UaACGAAUGGCUAGUGCACGAU.................... len:22 al:605
....................................................UCACGAAUGGCUAGUGuACGAU.................... len:22 al:1
....................................................UCACGAAUGuCUAGUGCACGAU.................... len:22 al:2
....................................................UCACGAAUGGCaAGUGCACGAU.................... len:22 al:1
....................................................UCACaAAUGGCUAGUGCACGA..................... len:21 al:1
....................................................UaACGAAUGGCUAGUGCACGA..................... len:21 al:59
....................................................UCACGAAUGGCUAGUGCACGAc.................... len:22 al:175
....................................................UaACGAAUGGCUAGUGCA........................ len:18 al:25
....................................................UaACGAAUGGCUAGUGCACG...................... len:20 al:85
....................................................UCACGAAUGGCUAGUGCACGgU.................... len:22 al:22
....................................................UCACGAgUGGCUAGUGCACGAU.................... len:22 al:7
....................................................UaACGAAUGGCUAGUGCAC....................... len:19 al:64
....................................................UCACGAAUGGCUAGUGCACGAUcC.................. len:24 al:5
....................................................aCACGAAUGGCUAGUGCACGAU.................... len:22 al:3
....................................................UCACuAAUGGCUAGUGCACGAUA................... len:23 al:1
....................................................UCACGAAUGGCUAGUGCACGuU.................... len:22 al:1
....................................................UCACGAAUGGuUAGUGCACGAU.................... len:22 al:1
....................................................UCACGAAUGGCUAGUGuACGAUA................... len:23 al:1
....................................................UCACGAAUGGCUAGUGCACGAcA................... len:23 al:11
....................................................UCACGAAUGGCUAGUGCACGAUc................... len:23 al:731
....................................................UCACGAAUGGCUAGUGC......................... len:17 al:3
....................................................UCACGAAUGGCUAGUGCACGAUg................... len:23 al:27
....................................................UaACGAAUGGCUAGUGCACGAUA................... len:23 al:47
....................................................UCACGAAUGGCUAGUGCuCGAU.................... len:22 al:1
....................................................UCACGAAUGGCUAGUGCACGAUACu................. len:25 al:5
....................................................UCACGAAaGGCUAGUGCACGAU.................... len:22 al:1
....................................................UCACGAAUGGCUAGUGCACGc..................... len:21 al:6
....................................................UCACGAAUGGCUAGUGCACGAUu................... len:23 al:6694
....................................................UaACGAAUGGCUAGUGC......................... len:17 al:4
.....................................................CACGAAUGGCUAGUGCACGA..................... len:20 al:1
.....................................................CACGAAUGGCUAGUGCACGAU.................... len:21 al:38
.....................................................CACGAgUGGCUAGUGCACGAU.................... len:21 al:1
.....................................................aACGAAUGGCUAGUGCACGA..................... len:20 al:1
.....................................................CACGAAUGGCUAGUGCACGAc.................... len:21 al:2
.....................................................CACGAAUGGCUAGUGCACGAUc................... len:22 al:11
.....................................................aACGAAUGGCUAGUGC......................... len:16 al:1
.....................................................CACGAAUGGCUAGUGCACGAUA................... len:22 al:1
.....................................................CACGAAUGGCUAGUGCACGAUACu................. len:24 al:1
.....................................................CACGAAUGGCUAGUGCACGAUu................... len:22 al:75
.....................................................aACGAAUGGCUAGUGCACGAUA................... len:22 al:1
.....................................................CACGAAUGGCUAGUGCACGAa.................... len:21 al:2
.....................................................aACGAAUGGCUAGUGCAC....................... len:18 al:2
.....................................................CACGAAUGGCUAGUGCACGc..................... len:20 al:1
.....................................................aACGAAUGGCUAGUGCACG...................... len:19 al:2
.....................................................aACGAAUGGCUAGUGCACGAU.................... len:21 al:6
.....................................................CACGAAUGGCUAGUGCACGu..................... len:20 al:2
......................................................ACGAAUGGCUAGUGCACGAUc................... len:21 al:65
......................................................ACGAAUGGCUAGUGCACGAUg................... len:21 al:3
......................................................ACGAAUGGCUAGUGCACGuU.................... len:20 al:1
......................................................ACaAAUGGCUAGUGCACGAU.................... len:20 al:1
......................................................ACGAAUGGCUgGUGCACGAU.................... len:20 al:3
......................................................ACGAAUGGCUAGUGCACGAa.................... len:20 al:2
......................................................ACGAAUGGCcAGUGCACGAU.................... len:20 al:2
......................................................ACGAAUGGCUAGUGCACGAUu................... len:21 al:597
......................................................ACGAAUGGCUAGUGCACGu..................... len:19 al:1
......................................................ACGAAUGGCUAGUGCACGAU.................... len:20 al:263
......................................................ACGAAUGGCUAGUGCACGAUA................... len:21 al:7
......................................................ACGAAUGGCUAGUGCACG...................... len:18 al:19
......................................................ACGgAUGGCUAGUGCACGAU.................... len:20 al:3
......................................................ACGAAUGGCUAGUGCACGcU.................... len:20 al:2
......................................................ACGAAUGGCUAGUGCACu...................... len:18 al:5
......................................................ACGAAUGGCUAGUaCACGAU.................... len:20 al:2
......................................................uCGAAUGGCUAGUGCACGAU.................... len:20 al:2
......................................................ACGAAUGGCUAGUGCACGAc.................... len:20 al:30
......................................................ACGAAUGGCUAGUGCACGAg.................... len:20 al:3
......................................................ACGAAUGGCUAGUGuACGAU.................... len:20 al:1
......................................................ACGAAUGGCUAGUGCgCGAU.................... len:20 al:4
......................................................ACGAAUGGCUAGUGCACGgU.................... len:20 al:6
.......................................................CGAAUGGCUAGUGCACGAUc................... len:20 al:6
.......................................................CGAAUGGCUAGUGCACGAUu................... len:20 al:66
.......................................................CGAAUGGCUAGUGCACGA..................... len:18 al:3
.......................................................CGAAUGGCUAGUGCACGAUA................... len:20 al:1
.......................................................CGAAUGGCUAGUGCACGAU.................... len:19 al:13
.......................................................CGAAUGGCUAGUGCACGAc.................... len:19 al:3
........................................................GAAUGGCUAGUGCACGAUu................... len:19 al:1
........................................................aAAUGGCUAGUGCACGAU.................... len:18 al:1
........................................................GAAUGGCUAGUGCACGuU.................... len:18 al:4
.........................................................AAUGGCUAGUGCACGAUu................... len:18 al:2
........................................................................AUACGUAGGCUUaACCUUU... len:19 al:5