Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_590:199370-199465 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_6235.ps.pdf
Locus Name: Cluster_6235
AUGGAUUGAGAAGCUCACGUUUCGUACGCUAGUCCUUCGAUAAAGCGUUUCGUUUCACGAAUGGCUAGCGCACGUUUUGUGGGCUUUCAUACAACA
.((...(((((.(((((((...(((.((((((((.((((...(((((...)))))..)))).)))))))).)))...))))))))))))..))... (-37.40)
.....................UCGUACGCUAGUCCUUCGA........................................................ len:19 al:1
......................CGUACGCUAGUCCUUCGAUgA..................................................... len:21 al:3
......................CGUACGCcAGUCCUUCGAUAAA.................................................... len:22 al:2
......................CGUACGCUgGUCCUUCGAU....................................................... len:19 al:3
......................CGUACGCUuGUCCUUCGAUAA..................................................... len:21 al:1
......................CGUACGCUAGUCCUUCGAUAAg.................................................... len:22 al:2
......................CGUACGCUAGUCCUUCGAUAAAG................................................... len:23 al:189
......................CGUACGCUAGcCCUUCGAUAAAG................................................... len:23 al:2
......................CGcACGCUAGUCCUUCGAUAAA.................................................... len:22 al:2
......................CGUACGCUAGUCCUUCGgU....................................................... len:19 al:3
......................CGUACGCUAGUCCUUCGAUgAAG................................................... len:23 al:4
......................CGUACGCUAGUCCUgCGAUAAA.................................................... len:22 al:1
......................CGUACGCUAGUCCUUCGAUAAu.................................................... len:22 al:20
......................CaUACGCUAGUCCUUCGAU....................................................... len:19 al:1
......................CGUgCGCUAGUCCUUCGAUAA..................................................... len:21 al:2
......................CGUACGCUAGUCCUUCGAUAAA.................................................... len:22 al:539
......................uGUACGCUAGUCCUUCGAUAA..................................................... len:21 al:1
......................aGUACGCUAGUCCUUCGAU....................................................... len:19 al:1
......................uGUACGCUAGUCCUUCGAU....................................................... len:19 al:1
......................CGUACGCUAGcCCUUCGAUAAAGC.................................................. len:24 al:2
......................CGUACGCUAGUCCUUCGAUAA..................................................... len:21 al:317
......................CGUACGCUgGUCCUUCGAUA...................................................... len:20 al:4
......................CGUACGCUAGUCCUUuGAUAAA.................................................... len:22 al:1
......................CGUACGCUAGUCCaUCGAUA...................................................... len:20 al:1
......................CGUACGCUAGUCCUUCGAUAAAGa.................................................. len:24 al:11
......................CGUACGCUAGUCCUUCGAUAAgG................................................... len:23 al:2
......................CGUgCGCUAGUCCUUCGAU....................................................... len:19 al:1
......................CGUcCGCUAGUCCUUCGAUAAAGC.................................................. len:24 al:1
......................CGUACGCUAGUCCUUCGAUc...................................................... len:20 al:9
......................CGUACGCUAGcCCUUCGAUA...................................................... len:20 al:1
......................CGUACGCcAGUCCUUCGAUAAAG................................................... len:23 al:2
......................CGUACGCUAGUCCUUCGAUAAAa................................................... len:23 al:13
......................CGUACGCUAGUCCcUCGAUA...................................................... len:20 al:2
......................CGUACGCcAGUCCUUCGAUAA..................................................... len:21 al:1
......................CaUACGCUAGUCCUUCGAUAA..................................................... len:21 al:2
......................CGUACGCUAGUCCUUCGAUAu..................................................... len:21 al:3
......................CGUACGCUAGUCCUUCGAUA...................................................... len:20 al:315
......................CGUACaCUAGUCCUUCGAUAAAG................................................... len:23 al:1
......................CGUACGCUAGUCCcUCGAUAAA.................................................... len:22 al:1
......................CGUACGCUAGUCCUUCGAcAAA.................................................... len:22 al:1
......................CGUACGCUAGUCCUUCGAa....................................................... len:19 al:1
......................gGUACGCUAGUCCUUCGAU....................................................... len:19 al:1
......................CGUACGCUAGUCCUUCGAUAAAuC.................................................. len:24 al:8
......................CGUACGCUAGaCCUUCGAUA...................................................... len:20 al:1
......................CGUACGCUAGUCCgUCGAUAAA.................................................... len:22 al:1
......................CGUACGCUAGUCuUUCGAUA...................................................... len:20 al:1
......................CGUACGCUcGUCCUUCGAUAA..................................................... len:21 al:1
......................CGUACGCUAGUCCUUCGAUu...................................................... len:20 al:66
......................CGUACGCUAGUCCUUCGAc....................................................... len:19 al:20
......................CGUACGCUgGUCCUUCGAUAA..................................................... len:21 al:1
......................CGUACGCUAGUCCUUCGA........................................................ len:18 al:11
......................CGUACGCUAGUCCUUCGAUAcA.................................................... len:22 al:1
......................CGUACGCUAGUCCUcCGAUAA..................................................... len:21 al:1
......................CGUACGCUAGUCCUcCGAUAAAG................................................... len:23 al:1
......................CGUACGCUAGUCCUcCGAUAAA.................................................... len:22 al:1
......................CGUACGCUAGUCCUUCGAUAAAu................................................... len:23 al:203
......................CGUACGCUAGUCCUUCGAg....................................................... len:19 al:2
......................CGUACGCUAGUCCUUCGAUg...................................................... len:20 al:3
......................CGUACaCUAGUCCUUCGAUA...................................................... len:20 al:3
......................CGUACGCUAGUCCUU........................................................... len:15 al:1
......................CGUACGCUAGUCCcUCGAUAA..................................................... len:21 al:1
......................CGUACGCUAGcCCUUCGAUAAA.................................................... len:22 al:1
......................CaUACGCUAGUCCUUCGAUAAA.................................................... len:22 al:3
......................CGUACGCUAGUCCUUCGAcA...................................................... len:20 al:1
......................CGUACGCUAGcCCUUCGAUAA..................................................... len:21 al:1
......................uGUACGCUAGUCCUUCGAUAAA.................................................... len:22 al:2
......................CGUACaCUAGUCCUUCGAUAA..................................................... len:21 al:1
......................CGUACGuUAGUCCUUCGA........................................................ len:18 al:1
......................CGUgCGCUAGUCCUUCGAUAAA.................................................... len:22 al:1
......................CGUACGCUgGUCCUUCGAUAAA.................................................... len:22 al:5
......................CGUACGCUAGUCCUUCGgUAAA.................................................... len:22 al:1
......................CGUACGCUAGUCCUcCGAU....................................................... len:19 al:1
......................CGUACGuUAGUCCUUCGAUAA..................................................... len:21 al:1
......................CGUACGCUAGUCCUUCGAUAAAGu.................................................. len:24 al:36
......................CGUACGCUAGUCCcUCGAUAAAG................................................... len:23 al:1
......................CGUACGCUAGUCCUUCGAU....................................................... len:19 al:274
......................CGUACGCUAGUCCUUCGAUAAc.................................................... len:22 al:2
......................CGUACGCUcGUCCUUCGAUA...................................................... len:20 al:1
......................CGUACGCUAGUCCUUCGgUAA..................................................... len:21 al:1
......................CGUACGCUAGUCCUUCGAUAAAc................................................... len:23 al:15
......................CGUACGCUAGUCCUUCGAUAAAGC.................................................. len:24 al:16
......................CGUACGCUAGUCCUUCGgUAAAG................................................... len:23 al:1
......................CGUgCGCUAGUCCUUCGAUA...................................................... len:20 al:2
......................CaUACGCUAGUCCUUCGAUA...................................................... len:20 al:1
......................CGUACGCUAGUCCUUC.......................................................... len:16 al:2
......................uGUACGCUAGUCCUUCGAUA...................................................... len:20 al:1
......................CGUACGCUAGUCCUUCGAUAg..................................................... len:21 al:2
......................CGUACGuUAGUCCUUCGAUAAA.................................................... len:22 al:2
.......................GUACGCUAGUCCUUCGAU....................................................... len:18 al:11
.......................GUACGCUAGUCCUUCGAc....................................................... len:18 al:1
.......................GUACGCUAGUCCUUCGAUAA..................................................... len:20 al:5
.......................GUACGCUAGUCCUUCGAUA...................................................... len:19 al:3
.......................GUACGCUAGUCCUUCGAUAAA.................................................... len:21 al:9
.......................GUACGCUAGUCCUUCGAUAAAG................................................... len:22 al:1
.......................GUACGCUAGUCCUUCGAUAAu.................................................... len:21 al:2
........................UACGCUAGUCCUUCGAUAA..................................................... len:19 al:3
........................UACGCUAGUCCUUCGAUAAA.................................................... len:20 al:1
.........................ACGCUAGUCCUUCGAUAAA.................................................... len:19 al:1
.............................................CGUUUCGUUUCACGAAUGGCUAGCGCACGUc.................... len:31 al:2
.............................................CGUUUCGUUUCACGAAUGGCUAGCGCA........................ len:27 al:1
.............................................CGUUUCGUUUCACGAAUGGCUAGCGaACGUU.................... len:31 al:1
.............................................CGUUUCGUUUCACGAAUGGCUAGCGCACGUU.................... len:31 al:18
..................................................CGUUUCACGAAUGGCUAGCG.......................... len:20 al:4
...................................................GUUUCACGAAUGGCUAGCGCACGUU.................... len:25 al:2
....................................................UUUCACGAAUGGCUAGCGCACGUU.................... len:24 al:3
....................................................UUUCACGAAUGGCUAGCGCACG...................... len:22 al:1
....................................................UUUCACGAAUGGCUAGCGCACGUUUU.................. len:26 al:1
.....................................................UUCACGAAUGGCUAGCGCACGUUU................... len:24 al:2
.....................................................cUCACGAAUGGCUAGCGCACGUU.................... len:23 al:1
.....................................................UUCACGAAUGGCUAGCGCACGUU.................... len:23 al:6
.....................................................UUCACGAAUGGCUAGCGCACGUc.................... len:23 al:1
......................................................UCACGAAUGGCUAGCGC......................... len:17 al:3
......................................................UCACGAAUGGCUuGCGCACGUU.................... len:22 al:1
......................................................UCACGAAUGGCcAGCGCACGUU.................... len:22 al:1
......................................................UCACGAAUGGCUAGCGCACG...................... len:20 al:185
......................................................UCACGAAUGGCUAGCGCACGUg.................... len:22 al:2
......................................................UCACGAAUGGCUAGCGCACGcUU................... len:23 al:2
......................................................UCACGAAUGGCUAGCGCACGUUg................... len:23 al:7
......................................................UCACGAAUGaCUAGCGCA........................ len:18 al:1
......................................................UCACGAAcGGCUAGCGCACGUU.................... len:22 al:1
......................................................UCACGAAUGGCUAGCGCACGaUUUG................. len:25 al:1
......................................................UCACGAAUGGuUAGCGCAC....................... len:19 al:1
......................................................UCACGAAUGGCUAGCGuACGUUU................... len:23 al:1
......................................................UCACGAAUGGCUAGCGCACa...................... len:20 al:28
......................................................UCACGAAUGGCUAGCaCACGUU.................... len:22 al:1
......................................................UCACGAAUGGCUcGC........................... len:15 al:1
......................................................UCACGAAcGGCUAGCGCA........................ len:18 al:1
......................................................UCACGAAUGGCUAGCGCgCGUU.................... len:22 al:2
......................................................UCACaAAUGGCUAGCGCACGUU.................... len:22 al:2
......................................................UCACGAAUGGCUgGCGCACGU..................... len:21 al:1
......................................................UCACGAAUGGCUAGCGCACGUgU................... len:23 al:3
......................................................UCACGAAUGGCUAGCG.......................... len:16 al:2
......................................................UCACGAAUGGCUAGCGaACGUU.................... len:22 al:5
......................................................UCACGAAUGGCUAGCGCACGUa.................... len:22 al:7
......................................................UCACGAAUGGCUAGCGCACGU..................... len:21 al:39
......................................................UCACGAAUGGCUAGCGCACGaUUUGU................ len:26 al:1
......................................................UCACGAAcGGCUAGCGCACGUUU................... len:23 al:2
......................................................UCACGcAUGGCUAGCGCACGUU.................... len:22 al:1
......................................................UCACGAAUGGCUAGCGCAu....................... len:19 al:56
......................................................UCACGAAUGGCUgGCGCACGUU.................... len:22 al:4
......................................................UCACGAAUGGCUAGCGCACGUUUc.................. len:24 al:2
......................................................UCgCGAAUGGCUAGCGCACGUUU................... len:23 al:3
......................................................UCACGAAUGGCUAGCGCAuGUUU................... len:23 al:1
......................................................UCACGAAUGGCUAGCGCACuUU.................... len:22 al:18
......................................................UCACGAgUGGCUAGCGCACGUUU................... len:23 al:3
......................................................UCACGAAUGGCUAGCGCACGUUU................... len:23 al:396
......................................................UCACGAAUGaCUAGCGCACGUU.................... len:22 al:1
......................................................cCACGAAUGGCUAGCGCACGU..................... len:21 al:1
......................................................UCACGAAUGGCUgGCGCACGUUU................... len:23 al:5
......................................................UCgCGAAUGGCUAGCGCACGUU.................... len:22 al:3
......................................................UCACGAAUGGCUAGC........................... len:15 al:14
......................................................UCACGAAUGGCUAGCGCACu...................... len:20 al:107
......................................................UCACGAAUGGCUAGCGCACGUUUUu................. len:25 al:16
......................................................UCACGAAcGGCUAGCGCAC....................... len:19 al:1
......................................................UCACGAAUGGCUAGCGCA........................ len:18 al:212
......................................................UCACGAAUGGCUAGCGCACaU..................... len:21 al:1
......................................................aCACGAAUGGCUAGCGCACGUUU................... len:23 al:1
......................................................UCACGAAUGGCUAGCGCAC....................... len:19 al:388
......................................................UCACGAAUGGCUAGCGCACGUUUa.................. len:24 al:5
......................................................UuACGAAUGGCUAGCGCACGUU.................... len:22 al:2
......................................................UCACGAAaGGCUAGCGCACGUU.................... len:22 al:2
......................................................cCACGAAUGGCUAGCGCA........................ len:18 al:1
......................................................UCACGAAUGGuUAGCGCACGUUU................... len:23 al:2
......................................................UCACGcAUGGCUAGCGCACGUUU................... len:23 al:1
......................................................UCACGAAUGGCUAGCGCACuU..................... len:21 al:2
......................................................UCACGAAUGGCcAGCGCACGUUU................... len:23 al:3
......................................................UCACGAAUGGCUcGCGCAC....................... len:19 al:1
......................................................UCACGAAUGGCUAGCGCACaUUU................... len:23 al:1
......................................................cCACGAAUGGCUAGCGCAC....................... len:19 al:4
......................................................UCACGAAUGGCaAGCGCACGUU.................... len:22 al:1
......................................................UCACGAAUGGCUAGCGCg........................ len:18 al:2
......................................................UCACGAAUGGCUAGCGCACGcU.................... len:22 al:1
......................................................cCACGAAUGGCUAGCGCACGUU.................... len:22 al:4
......................................................UCACGAAUGGCUAGCGCACGUcU................... len:23 al:3
......................................................UCACGAcUGGCUAGCGCAC....................... len:19 al:1
......................................................UCACGAAUGGCUAGCGCACGaUU................... len:23 al:2429
......................................................UCACGAAUaGCUAGCGCACGUUUU.................. len:24 al:1
......................................................UCACGAAUGGCUAGCGCACGUUaU.................. len:24 al:1
......................................................UCACGAAUGGCcAGCGCAC....................... len:19 al:1
......................................................UCACGgAUGGCUAGCGCA........................ len:18 al:1
......................................................UCACGAAUGGCcAGCGCA........................ len:18 al:1
......................................................UCACGAcUGGCUAGCGCACGUUU................... len:23 al:1
......................................................UCACGAAUGGCUAGCGCc........................ len:18 al:1
......................................................UCACGAAUGGCUAGCGCgC....................... len:19 al:2
......................................................UCACGAAUGGCUAGCGCACGgU.................... len:22 al:22
......................................................UCACGAAUGGCUgGCGCAC....................... len:19 al:2
......................................................UCACGAAUGGCUAGCGCACGgUU................... len:23 al:25
......................................................UCAuGAAUGGCUAGCGCACGUUUU.................. len:24 al:1
......................................................UCACGAAUGGCUAGCGCACGUUUU.................. len:24 al:95
......................................................aCACGAAUGGCUAGCGCACGUU.................... len:22 al:7
......................................................UCACGAAUGGCUcGCGCACGUU.................... len:22 al:1
......................................................UCACGAAUGGCUAGCGCACuUUU................... len:23 al:3
......................................................UCACGAAUGGCUAGCGCACGUUa................... len:23 al:6
......................................................UCACGgAUGGCUAGCGCACGUU.................... len:22 al:10
......................................................UCACGAAUGGCUAGCGCACGaUUU.................. len:24 al:244
......................................................UCACGAAUGGCUAGCGCACc...................... len:20 al:9
......................................................UCACGgAUGGCUAGCGCACGUUU................... len:23 al:1
......................................................UCACGAAUGGCUAaCGCACGUU.................... len:22 al:1
......................................................UCACGAAUGGCUAGCGCACGUc.................... len:22 al:157
......................................................UCACGAAUGGCUAGCGuACGUU.................... len:22 al:1
......................................................UCgCGAAUGGCUAGCGCAC....................... len:19 al:3
......................................................cCACGAAUGGCUAGCGCACGUUU................... len:23 al:2
......................................................UCACGgAUGGCUAGCGCACG...................... len:20 al:2
......................................................UCACGAAUGGCUAGCGCACGUUcU.................. len:24 al:1
......................................................UCACGAAUGGCUAGCGCACGUU.................... len:22 al:1044
......................................................UCACGAAUGGCUAGCGCACGUUc................... len:23 al:21
......................................................UCgCGAAUGGCUAGCGCA........................ len:18 al:1
......................................................UCACGAAUGGCUAGCGu......................... len:17 al:1
......................................................UCACGAAUGGCUAGuGCACGUUU................... len:23 al:2
.......................................................CACGAAUGGCUAGCGCACGUU.................... len:21 al:13
.......................................................CACGAAUGGCUAGCGCA........................ len:17 al:1
.......................................................CACGAAUGGCUAGCGCACGUUU................... len:22 al:2
.......................................................aACGAAUGGCUAGCGCACGUU.................... len:21 al:1
.......................................................CACGAAUGGCUAGCGCAuGUU.................... len:21 al:1
.......................................................CACGAAUGGCUAGCGCAC....................... len:18 al:15
.......................................................CACGAAUGGCUAGCGCACGaUU................... len:22 al:35
.......................................................CACGAAUGGCUAGuGCACGU..................... len:20 al:3
.......................................................CACGAAUGGCUAGCGCACGU..................... len:20 al:1
.......................................................CACGAAUGGCUAGCGCACGUUUU.................. len:23 al:1
.......................................................CACGAAUGGCUAGCGCACG...................... len:19 al:2
.......................................................CACGAAUGGCUAGCGCACGUc.................... len:21 al:1
........................................................ACGAAUGGCUAGCGCACGUU.................... len:20 al:13
........................................................ACGAAUGGCUAGCGCACGUc.................... len:20 al:1
........................................................ACGAAUGGCUAGCGCACGUUU................... len:21 al:3
........................................................ACGAAUGGCUAGCGCACGaUU................... len:21 al:6
........................................................ACGAAUGGCUAGCGCACG...................... len:18 al:1
.........................................................CGAAUGGCUAGCGCACGUc.................... len:19 al:1
.........................................................CGAAUGGCUAGCGCACGUUc................... len:20 al:1
.........................................................CGAAUGGCUAGCGCACGUU.................... len:19 al:4
.........................................................CGAAUGGCUAGCGCACGUUU................... len:20 al:1
..........................................................GAAUGGCUAGuGCACGUU.................... len:18 al:1
..........................................................GAAUGGCUAGCGCACGUU.................... len:18 al:4
............................................................................UUGUGGGCUUUCAUACAACA len:20 al:1
............................................................................UUGUGGGCUUUCAUACAAC. len:19 al:1