Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_567:162846-162935 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_6099.ps.pdf
Locus Name: Cluster_6099
AAAGAAUUGCAGUUAUUCCAGCAAUAUCUGAAGCGUUGAACAUUUAUUGUGCAAUGCUCAGAUGUUGCUUGAAUAACUGUUAACUUUAUC
((((....((((((((((.((((((((((((.((((((.(((.....))).)))))))))))))))))).))))))))))...))))... (-42.70)
.................CCAGCAAUAUCUGAAGCGU...................................................... len:19 al:1
..................CAGCAAUAUCUGAAGCGUUGAACA................................................ len:24 al:15
..................CAaCAAUAUCUGAAGCGUU..................................................... len:19 al:1
..................CAGCAAUAUCUGAAGCGUUGAACg................................................ len:24 al:1
..................CAGCAAUAUCUGAAGCGUUGAAu................................................. len:23 al:1
..................CAGCAAUAUCUGAAGCGUU..................................................... len:19 al:4
..................CAGaAAUAUCUGAAGCGUUGAAC................................................. len:23 al:1
..................CAGCAAUAUCUGAAGCGUUGAAC................................................. len:23 al:6
..................CAGCAAUAUCUGAAGCGUUGAACAUUc............................................. len:27 al:1
..................CAGCAAUAUCUGAgGCGUUGAAC................................................. len:23 al:1
..................CAGCAAUAUCUGAAGCGUUGAACAUUUAUU.......................................... len:30 al:3
..................CAGCAAUAUCUGAAGCGU...................................................... len:18 al:6
..................CAGCAAUgUCUGAAGCGUUGAAC................................................. len:23 al:1
...................AGCAAcAUCUGAAGCGUUGAACA................................................ len:23 al:4
...................AGCAAUAUCUGAAGCGUU..................................................... len:18 al:3
...................AGCAgUAUCUGAAGCGUUGAACA................................................ len:23 al:9
...................AGCAcUAUCUGAAGCGUUGAAC................................................. len:22 al:1
...................AGCAAUAUCUGAAGCGUUGgACA................................................ len:23 al:9
...................AGCAAUAUCUGAAGCGUUGAACAUUUAU........................................... len:28 al:4
...................AGCgAUAUCUGAAGCGUUGAACA................................................ len:23 al:4
...................AGCAAUAUCUGAAGCGgUGAACA................................................ len:23 al:1
...................AGCAAUAgCUGAAGCGUUGAA.................................................. len:21 al:1
...................uGCAAUAUCUGAAGCGUUGAAC................................................. len:22 al:1
...................AGCAAUAUCUGAAGCGUUGAACg................................................ len:23 al:32
...................AGCAAUgUCUGAAGCGUUGAAC................................................. len:22 al:1
...................AGCAAUAUCUGAAGCGUUGAACAUaUAU........................................... len:28 al:2
...................AGCAAUAUCcGAAGCGUUGAACA................................................ len:23 al:4
...................AGCAAUAUCUGAAGCGUUGAACAUaU............................................. len:26 al:4
...................AGCAAUAUCUGAgGCGUUGAACAUUU............................................. len:26 al:1
...................AGCAgUAUCUGAAGCGUUGAAC................................................. len:22 al:2
...................AGCAAUAUCUGAAGCGUUGAACA................................................ len:23 al:2054
...................AGCAAUAUCUGAAGCGUUGAACAUU.............................................. len:25 al:31
...................AGCAAUAUCUGAAGCaUUGAACA................................................ len:23 al:1
...................AGCAAUAUCUGAAGCGUUGAgCA................................................ len:23 al:10
...................AGCcAUAUCUGAAGCGUUGAACA................................................ len:23 al:1
...................AGCAAUcUCUGAAGCGUUGAACA................................................ len:23 al:1
...................AGCAAUAUCUGAAGCGUUGgAC................................................. len:22 al:4
...................AGCAAUAUCUGAAGCGUUaAACA................................................ len:23 al:1
...................AGCAAUAUCUGAAGCGUUGAACAUUUu............................................ len:27 al:3
...................uGCAAUAUCUGAAGCGUUGAACA................................................ len:23 al:3
...................AGCAAUAUCUGAAGCGUUGAACAUUU............................................. len:26 al:50
...................AGCAAUAUCUGAAGCGUUGAAu................................................. len:22 al:31
...................AGCAAUAUCUGAAGCGUUGAAC................................................. len:22 al:376
...................AGCAAUAUCUGAAGCGUUGAACAUUUAUUuU........................................ len:31 al:1
...................AGCAAUAUCUGAAGCGUcGAAC................................................. len:22 al:4
...................AGCAAUAUCUGuAGCGUUGAACA................................................ len:23 al:1
...................AGCAAUAUCUGAAGCGUUGAACAa............................................... len:24 al:4
...................AGCAAUAUCUGAAGCGUUGAACu................................................ len:23 al:38
...................AGCAAUAUCUGAAGCuUUGAACA................................................ len:23 al:1
...................AGCAAUAUCUGAAGCGUcGAACA................................................ len:23 al:5
...................AGCAAUAUCUGAAGCGUUGAACAUUUAUUGa........................................ len:31 al:1
...................AGCAAUAUCUGAAGCGUUGAACgU............................................... len:24 al:1
...................AGCAgUAUCUGAAGCGUUGAACAU............................................... len:24 al:2
...................AGCAAUAUCUGAAGCGUUGAACAc............................................... len:24 al:2
...................AGCAAUAUCUGAAGCGUUGAACAUUa............................................. len:26 al:1
...................AGCAAUAUCUGAAGCGUUGAA.................................................. len:21 al:42
...................AaCAAUAUCUGAAGCGUUGAACA................................................ len:23 al:11
...................AGuAAUAUCUGAAGCGUUGAACA................................................ len:23 al:2
...................AGCAAUAUCUGAAGCGUUGAACAUUUAUUG......................................... len:30 al:8
...................AGCAAUAUCUGAAGCGUUGAACAUUUgU........................................... len:28 al:1
...................AGCAAaAUCUGAAGCGUUGAACA................................................ len:23 al:1
...................cGCAAUAUCUGAAGCGUUGAACA................................................ len:23 al:1
...................cGCAAUAUCUGAAGCGUUGAAC................................................. len:22 al:1
...................AGCAAUAUCUGAAGCGUUGAACAUa.............................................. len:25 al:2
...................AGCAcUAUCUGAAGCGUUGAACA................................................ len:23 al:2
...................AGCAAUAUCUGAAGCGUUG.................................................... len:19 al:2
...................AGCAAUAUCUGAAGCGUUGgA.................................................. len:21 al:1
...................AGCAAUAUCUGgAGCGUUGAACA................................................ len:23 al:6
...................AGCAAUAUCUGAgGCGUUGAACA................................................ len:23 al:7
...................AGCAAUAUCUGAAGCGUUGAACuUU.............................................. len:25 al:1
...................AGCAAcAUCUGAAGCGUUGAA.................................................. len:21 al:1
...................AGCAAUAUCUGgAGCGUUGAAC................................................. len:22 al:1
...................AGCAAUAUCUGAAGCGUUGA................................................... len:20 al:18
...................AGCAAUAUCUGAAGCGUc..................................................... len:18 al:2
...................cGCAAUAUCUGAAGCGUUGAACAUUU............................................. len:26 al:1
...................AGCAAUAUCUGAAGCGUUGAACAUUUA............................................ len:27 al:5
...................AGCAAUAUCUGAAGCGUUGAACAUUUAUUa......................................... len:30 al:2
...................AGCAAUAUCUGAAGCGUUGAACAU............................................... len:24 al:46
...................AGCAAUAUCUGAAGCGUUGgACAUUUAUUG......................................... len:30 al:1
...................AaCAAUAUCUGAAGCGUUGAACAUUU............................................. len:26 al:1
...................AGCAAUAUCUGAAGCGUUGAACAUUUAUU.......................................... len:29 al:11
...................AGCAAUAUCUGAAGCGUUGAAuA................................................ len:23 al:2
...................AaCAAUAUCUGAAGCGUUGAAC................................................. len:22 al:7
...................AGCAAUAUCUGAAGCGUUGAACAUUUAUa.......................................... len:29 al:2
...................AGCAAUAUCUGAAGCGUUGAAaA................................................ len:23 al:1
...................AGCAAUAUCUGAAGuGUUGAACA................................................ len:23 al:1
...................AaCAAUAUCUGAAGCGUUGAACAUUUAUU.......................................... len:29 al:1
...................AGCAAUcUCUGAAGCGUUGAAC................................................. len:22 al:1
...................gGCAAUAUCUGAAGCGUUGAACA................................................ len:23 al:5
...................AGCAAUAUCUGAAGCGUUGAACAUUUAUUu......................................... len:30 al:1
...................AGCAAUAcCUGAAGCGUUGAACA................................................ len:23 al:10
...................AaCAAUAUCUGAAGCGUUGAACAU............................................... len:24 al:1
...................AGCAAUAUCUGAAGCGcUGAACA................................................ len:23 al:5
...................AGCAAUAUCUGAAGCGUUGuACA................................................ len:23 al:1
...................AGCAAUAUCUGAAGCGUUGAACc................................................ len:23 al:6
...................AGCAAUAUCUGAgGCGUUGAAC................................................. len:22 al:2
...................AGCAAUAUCUaAAGCGUUGAACA................................................ len:23 al:2
....................GCAAUAUCUGAAGCGUUG.................................................... len:18 al:1
....................GCAAUAUCUGAAaCGUUGAACA................................................ len:22 al:2
....................GCAAUAUCUGAAGCGUcGAACAUUU............................................. len:25 al:1
....................GCAAUAUCUGAAGCGUUGAACAUUUAUUGUa....................................... len:31 al:1
....................GCAAcAUCUGAAGCGUUGAACAUUUAUU.......................................... len:28 al:1
....................GCAAUAUCUGAAGCGUUGAACg................................................ len:22 al:13
....................GCAAUAUCUGAAGCGUUGAACAa............................................... len:23 al:2
....................GCAAUgUCUGAAGCGUUGAACA................................................ len:22 al:1
....................GCAAUAUCUGAAGCGUUGgACA................................................ len:22 al:5
....................GCAAUAUCUGAAGCGUUGAACAUUUAUUG......................................... len:29 al:8
....................GCAAUAUCUGAAGCGUUGAgCAUUU............................................. len:25 al:2
....................GCAAUAUCUGAAGCGUUGAgCA................................................ len:22 al:3
....................aCAAUAUCUGAAGCGUUGAACAUUUAUU.......................................... len:28 al:2
....................GCAAUAUCUGAAGCGUUGAACAUUUAUUa......................................... len:29 al:1
....................GCAAUAUCUGAAGCGUUGAACA................................................ len:22 al:612
....................GCAAUAUCUGAgGCGUUGAACA................................................ len:22 al:1
....................GCgAUAUCUGAAGCGUUGAAC................................................. len:21 al:1
....................GCAAUAUCUGAAGCaUUGAACAUUU............................................. len:25 al:1
....................GCAAUAUCUGAAGCGUUGAACuUU.............................................. len:24 al:1
....................GCAAUAUCUGAAGCaUUGAACA................................................ len:22 al:1
....................GCAAUAUCUGAAGCGUUGAACAUUUAU........................................... len:27 al:3
....................GCAAUAUCUGAgGCGUUGAACAUU.............................................. len:24 al:4
....................GCAAUAUCUGAAGCGUUGAA.................................................. len:20 al:14
....................GCAAUAaCUGAAGCGUUGAACAUUUAUUG......................................... len:29 al:1
....................GCAAUAUCcGAAGCGUUGAACAUUU............................................. len:25 al:3
....................GCAAUAUCUGAAGCGUUGAACAU............................................... len:23 al:12
....................GCAAUAUCUGAAGCGUUGAACAUUUA............................................ len:26 al:5
....................GCAAUAUCcGAAGCGUUGAAC................................................. len:21 al:1
....................GCAAUAUCUGAAGCGUUGAACAUU.............................................. len:24 al:41
....................GCAAUAUCUGAgGCGUUGAA.................................................. len:20 al:1
....................GCAAUAUCUGAAGCGUUGAACAUa.............................................. len:24 al:3
....................aCAAUAUCUGAAGCGUUGAAC................................................. len:21 al:3
....................GuAAUAUCUGAAGCGUUGAAC................................................. len:21 al:2
....................GCAgUAUCUGAAGCGUUGAACA................................................ len:22 al:2
....................GCgAUAUCUGAAGCGUUGAACA................................................ len:22 al:1
....................GCAAUAUCUGAAGCGUcGAAC................................................. len:21 al:1
....................GCAAUAUCUGAAGCGcUGAACA................................................ len:22 al:4
....................GCAAUAUCUGAAGCGUUGAACAUc.............................................. len:24 al:1
....................GCAAUAUCUGAAGCGUUGAACAUUU............................................. len:25 al:70
....................GCAAUAUCUGAAGCGUUGAAa................................................. len:21 al:2
....................GCAAcAUCUGAAGCGUUGAACA................................................ len:22 al:2
....................GCAAUAUCUGAgGCGUUGAACAUUUA............................................ len:26 al:1
....................GCAAUAUCUGAAGCGUgGAAC................................................. len:21 al:1
....................uCAAUAUCUGAAGCGUUGAACA................................................ len:22 al:1
....................GCAAUAcCUGAAGCGUUGAAC................................................. len:21 al:1
....................GCAAUAUCUGgAGCGUUGAAC................................................. len:21 al:1
....................GCAAUAUCUGAAGCGUUGAAC................................................. len:21 al:134
....................GuAAUAUCUGAAGCGUUGAACA................................................ len:22 al:1
....................aCAAUAUCUGAAGCGUUGAACA................................................ len:22 al:5
....................GCAAUAUCUGAAGCGUUGAACu................................................ len:22 al:4
....................GCAAUAUCUGAgGCGUUGAAC................................................. len:21 al:1
....................GCAAUAUCUGAAGCGUUGAACAUUUAUU.......................................... len:28 al:9
....................aCAAUAUCUGAAGCGUUGAACAUUU............................................. len:25 al:1
....................GCAAUAcCUGAAGCGUUGAACA................................................ len:22 al:1
....................GCAAUAUCUGAAGCGUUGAAu................................................. len:21 al:16
.....................CAAUAUCUGAAGCGUUGAACA................................................ len:21 al:3
.....................CAAUAUCUGAAGCGUU..................................................... len:16 al:1
......................AAUAUCUGAAGCGUUGAAC................................................. len:19 al:3
......................AAUAUCUGAAGCGUUGAACA................................................ len:20 al:2
......................AAUAUCUGAAGCGUUGAACu................................................ len:20 al:1
......................AAUAUCUGAAGCGUUGAACAcU.............................................. len:22 al:1
......................AAUAUCUGAAGCGUUGAACAUU.............................................. len:22 al:1
.......................AUAUCUGAAGCGUUGAACAUU.............................................. len:21 al:1
.......................AUAUCUGAAGCGUUGAAC................................................. len:18 al:1
.......................AUAUCUGAAGCGUUGAACAUUUAU........................................... len:24 al:1
.......................AUAUCUGAAGCGUUGAACA................................................ len:19 al:1
.......................AUAUCUGAAGCGUUGAACAUUUAUUGU........................................ len:27 al:1
........................UAUCUGAAGCGUUGAACAUUU............................................. len:21 al:36
........................UAUCUGAAGCGUUGAACAc............................................... len:19 al:2
........................UAUCUGAAGCGUUGAACAUUa............................................. len:21 al:2
........................UAUCUGAgGCGUUGAACAUUU............................................. len:21 al:1
........................UAUCUGAAGgGUUGAACAUUU............................................. len:21 al:1
........................aAUCUGAAGCGUUGAACAUUU............................................. len:21 al:1
........................UAUCUGAAGCGUUGAACAU............................................... len:19 al:3
........................UAUCUGAAGCGUUGAACAUUUu............................................ len:22 al:3
........................UAUCUGAAGCGUUGAAuA................................................ len:18 al:1
........................UAUCUGAAGCGUUGAACAUUc............................................. len:21 al:3
........................UcUCUGAAGCGUUGAACAUUU............................................. len:21 al:1
........................UAUCUGAAGCGUUGAACAUU.............................................. len:20 al:6
.........................AUCUGAAGCGUUGAACAUUU............................................. len:20 al:3
..........................UCUGAAGCGUUGAACAUUUAUU.......................................... len:22 al:3
.........................................AUUUAUUGUGCAAUGCUCAGAUGUUGCUU.................... len:29 al:2
.........................................AUUUAUUGUGCAAUGCUCAGAUGU......................... len:24 al:7
.........................................AUUUAUUGUGCAAUGCUCAGAUGUUG....................... len:26 al:4
.........................................AUUUAUUGUGCAAUGCUCAGAUGc......................... len:24 al:1
.........................................AUUUAUUGUGCAAUGCUCAGAUGUUGCUUG................... len:30 al:2
.........................................AUUUAUUGUGCAAUGCUCAGAUGUUGCUc.................... len:29 al:1
..........................................UUUAUUGUGCAAUGCUCAGAUGUU........................ len:24 al:1
..........................................UUUAUUGUGCAAUGCUCAGAUGUUGCUUG................... len:29 al:1
...........................................UUAUUGUGCAAUGCUCAGAUGU......................... len:22 al:1
.................................................UGCAAUGCcCAGAUGUU........................ len:17 al:1
.................................................UGCAAUGCUCAGAUGUUu....................... len:18 al:5
.................................................UGCAAUGCUCAGAUu.......................... len:15 al:1
.................................................UGCAAUGCUCAGAUGc......................... len:16 al:4
.................................................UGCAAUGCUCAGAUGUa........................ len:17 al:2
.................................................UGCAAUGCUCAGAUGUg........................ len:17 al:1
.................................................UGCAAUGCUCAGAUGU......................... len:16 al:44
.................................................UGCAAUGCUCAGAUGa......................... len:16 al:3
.................................................UGCAAUGCUCAGAUGUUa....................... len:18 al:8
.................................................UGCAgUGCUCAGAUGU......................... len:16 al:1
.................................................UGCAAUGCUCAGAUG.......................... len:15 al:25
.................................................UGCAAUGCUCAGAUGUUGCUUG................... len:22 al:2
.................................................UGCAAUGCUCAGAUGUU........................ len:17 al:52
.................................................UGCAAUGCUCAGAUGUc........................ len:17 al:2
.................................................UGCAAUGCUCAGAUGUUGCUUu................... len:22 al:1
.................................................UGCAAUGCUCAGAUGUUGaUU.................... len:21 al:1
.................................................UGCAAUGCUCAGAUGUUG....................... len:18 al:19
.................................................UGCAAUGCcCAGAUGU......................... len:16 al:2
.................................................UGCAAUGCUCAGAUGg......................... len:16 al:1
..................................................GCAAUGCUCAGAUGU......................... len:15 al:5
..................................................GCAAUGCUCAGAUGUU........................ len:16 al:3
...................................................CAAUGCUCAGAUGUU........................ len:15 al:1
....................................................AAUGCUCAGAUGUUGCUUGA.................. len:20 al:1
....................................................AAUGCUCAGAUGUUGCUUG................... len:19 al:5