Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_502:58948-59038 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_5613.ps.pdf
Locus Name: Cluster_5613
GACUAAAGAGCUUGACCGGUUAGCAUAACAUUGUAAGAGAUCUUUAAGACCUCUUGCAUUGUUAUGCUGCCUGGGAAAGCUUCAUGUACGU
.......((((((..((((.((((((((((.((((((((.(((...))).)))))))).)))))))))).))))..))))))......... (-42.00)
GACUAAAGAGCUUGACCGG........................................................................ len:19 al:2
GACUAAAGAGCUUGACCGGU....................................................................... len:20 al:15
GACUAAAGAGCUUGgCCGGU....................................................................... len:20 al:1
.ACUAAAGAGCUUGACCGGc....................................................................... len:19 al:2
.ACUAAAGAGCUUGACCGG........................................................................ len:18 al:1
.ACUAAAGAGCUcGACCGGU....................................................................... len:19 al:1
.ACUAAAGAGCUUGACCGGU....................................................................... len:19 al:22
..CUAAAGAGCUUGACCGGU....................................................................... len:18 al:4
..CUAAAGAGCUUGACuGGU....................................................................... len:18 al:1
...UAAAGAGCUUGACCGGU....................................................................... len:17 al:1
...UAAAGAGCUUGACCGGa....................................................................... len:17 al:1
...UAAAGAGCUUGACCGGc....................................................................... len:17 al:1
....................aAGCAUAACAUUGUAAGAGAUCU................................................ len:23 al:1
....................UAGCAUAACAUcGUAAGA..................................................... len:18 al:1
....................UAGCAUAACAUUGUAuG...................................................... len:17 al:1
....................UAGCAUAcCAUUGUAAG...................................................... len:17 al:1
....................UAGuAUAACAUUGUAAG...................................................... len:17 al:1
....................UAGCAUcACAUUGUAAG...................................................... len:17 al:1
....................UAGCAUAACAUUGUAgG...................................................... len:17 al:6
....................UAGCAUAACAcUGUAAG...................................................... len:17 al:4
....................UAGCAUAACAUUGUAAGAGAUCU................................................ len:23 al:252
....................UAGCAUAACgUUGUAAGAGAUCU................................................ len:23 al:1
....................UAGCAUAACAUUGUAAGu..................................................... len:18 al:1
....................cAGCAUAACAUUGUAAGAGAUCU................................................ len:23 al:4
....................UAaCAUAACAUUGUAAGAGAUCU................................................ len:23 al:1
....................UAGCAUAACAUUGUAAGAGgUC................................................. len:22 al:6
....................UAGCAUAACAUUGUAAGAcA................................................... len:20 al:1
....................UAGCAUAACAUUGcAAG...................................................... len:17 al:1
....................UAGCAUAACAUUGUAAGAGAUu................................................. len:22 al:124
....................UAGCAUAACAUUGUAAGgGAUCU................................................ len:23 al:6
....................UAGCAUAACAUUGUAAGAGAUCUUUAAGA.......................................... len:29 al:1
....................UAGuAUAACAUUGUAAGAGAUCU................................................ len:23 al:1
....................UAGCAUAACAUUGUAAGAGAUa................................................. len:22 al:12
....................UAGCAUAgCAUUGUAAGAGAUCU................................................ len:23 al:1
....................UAGCAUAACAUUGUAAu...................................................... len:17 al:1
....................UAGCAUAACAUUGUAAGAGuUC................................................. len:22 al:2
....................UAGCAUAACAUUGUAAGAGAU.................................................. len:21 al:38
....................UAGCAUAACAUUGUAcG...................................................... len:17 al:1
....................aAGCAUAACAUUGUAAG...................................................... len:17 al:11
....................UAGCAUAACAUUGUAAGAGAc.................................................. len:21 al:2
....................UAGCAUAACcUUGUAAGAGAU.................................................. len:21 al:1
....................UAGCAUAACAUUGUAAa...................................................... len:17 al:2
....................UAGCAUAACAUcGUAAG...................................................... len:17 al:8
....................UAGCAUAACAUUGUgAG...................................................... len:17 al:7
....................UAGCAUAACAUUGUAAGAGgUCU................................................ len:23 al:3
....................gAGCAUAACAUUGUAAG...................................................... len:17 al:1
....................UAGCAUAACAUUGUAg....................................................... len:16 al:1
....................cAGCAUAACAUUGUAAGAGAUC................................................. len:22 al:1
....................UAGCAUAACAUUGUAAGAGAaC................................................. len:22 al:1
....................UAGCAUAACAUUGUAAGuGAUC................................................. len:22 al:1
....................UAGCAUAACAUUGUAAGAGAUC................................................. len:22 al:3
....................UAGCAUAACAUUGUAAG...................................................... len:17 al:1589
....................UAGCAUAACAUUGUAAGAGAUCa................................................ len:23 al:175
....................UAGCAUAACAUUGUAAGAGAUCc................................................ len:23 al:39
....................UAGCAUAACgUUGUAAGAGAU.................................................. len:21 al:1
....................UgGCAUAACAUUGUAAG...................................................... len:17 al:4
....................UAGCAUAACAUUGUgAGAGAUCU................................................ len:23 al:1
....................UAGCAUAACAUUGUAAGAGAUuU................................................ len:23 al:1
....................UAGCAUAACAUUGUAAGgGAUC................................................. len:22 al:11
....................UAGCAUAACAUUaUAAG...................................................... len:17 al:1
....................UAGCAUAAuAUUGUAAG...................................................... len:17 al:1
....................UAGCAUAACgUUGUAAG...................................................... len:17 al:4
....................UAGCAUAgCAUUGUAAG...................................................... len:17 al:3
....................UAuCAUAACAUUGUAAG...................................................... len:17 al:1
....................cAGCAUAACAUUGUAAG...................................................... len:17 al:7
....................UAGCAUAACAUUGUAAGAGAcC................................................. len:22 al:10
....................UAGCAUAACAUUGUAAGAGA................................................... len:20 al:17
....................UAGCAUAACAUUGcAAGAGAU.................................................. len:21 al:1
....................UAGCAUAACAUUGUAgGAGAUCU................................................ len:23 al:1
....................UAGCAcAACAUUGUAAG...................................................... len:17 al:9
....................UAGCAUAACAUUGUAAGAGAUCUU............................................... len:24 al:2
....................UAGCAUAACAUUGUAAGAG.................................................... len:19 al:3
....................UAGCAUAACAUUGUAAGAGAUCUUUAAGACC........................................ len:31 al:1
....................UAGCAUgACAUUGUAAG...................................................... len:17 al:5
....................UAGCAUAACAUUGUAAGA..................................................... len:18 al:17
....................UAGCAUAACAcUGUAAGAGAUCU................................................ len:23 al:1
.....................AGCAUAACAUUGUAAGAGAUCc................................................ len:22 al:2
.....................AGCAUAACAUUGUAAG...................................................... len:16 al:2
.....................AGCAUAACAUUGUAAGAGAUCU................................................ len:22 al:15
......................GCAUAACAUUGUAAG...................................................... len:15 al:2
.......................CAUAACAUUGUAAGAGAUCU................................................ len:20 al:1
.........................UAACAUUGUAAGAGAUCU................................................ len:18 al:3
.....................................AGAUCUUUgAGACCUCUU.................................... len:18 al:10
.........................................CUUUAAGACCUCUUGCAUUGUUAUGCUGuC.................... len:30 al:1
.........................................CUUUAAGACCUCUUGCgUUGUUAUGCUGCC.................... len:30 al:1
.........................................CUUUAAGACCUCUUGCAUUGUUAUGCUGCu.................... len:30 al:4
.........................................CUUUAAGACCUCUUGCAUUGUUAUGCUGCC.................... len:30 al:6
..........................................UUUAAGACCUCUUGCAUUGUUAUGCUGCu.................... len:29 al:1
..........................................UUUAAGACCUCUUGCAUUGUUAUGCUGCC.................... len:29 al:1
.................................................CCUCUUGCAUUGUUAUGCUG...................... len:20 al:5
.................................................CCUCUUGCAUUGUUAUG......................... len:17 al:1
.................................................CCUCUUGCAUUGUUAUGCUGCu.................... len:22 al:6
.................................................CCUCUUGCAUUGUUAUGCUGCa.................... len:22 al:6
.................................................CCUCUUGCAUUGUUAUGCUGCC.................... len:22 al:11
........................................................CAUUGUUAUGCUGCC.................... len:15 al:1
.......................................................................UGGGAAAGCUUCAUGUACG. len:19 al:1