Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_461:215454-215549 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_5257.ps.pdf
Locus Name: Cluster_5257
UCUCAUGCCUGCUCAACCUCUGAACAGCUUACAAUGAAGCCUAUAUUUAUUGUACGGUUCUUGUAUGCUGUUCUAAGGAGGAGUGGGAAUUGGCUG
.......(((((((..(((..(((((((.(((((.(((.(.((((.....)))).).)))))))).)))))))..)))..)))))))......... (-37.90)
UCUCAUGCCUaCUCAACCUC............................................................................ len:20 al:1
.CUCAUGCCUGCUCAACCUC............................................................................ len:19 al:2
....................UGAgCAGCUUACAAUGAAGC........................................................ len:20 al:1
....................UGAACAGCUUACAAUGAAc......................................................... len:19 al:1
....................cGAACAGCUUACAAUGAA.......................................................... len:18 al:2
....................UGAACAGCUUACAAUGAAG......................................................... len:19 al:21
....................UGgACAGCUUACAAUGAAGCCUAU.................................................... len:24 al:117
....................UGgACAGCUUACAAUGAAGCCU...................................................... len:22 al:109
....................UGAACAGCUUACAAUGAu.......................................................... len:18 al:1
....................UGgACAGCUUACAAUGA........................................................... len:17 al:4
....................UGgACAGCUUACAAUGAAGC........................................................ len:20 al:532
....................UGAACAGCUUACAAUGAAGa........................................................ len:20 al:3
....................UGAACAGCUUACAAUGAAGC........................................................ len:20 al:22
....................UGAACAGuUUACAAUGAAGC........................................................ len:20 al:1
....................UGAACAGCUUACAgUGAA.......................................................... len:18 al:1
....................UGAAuAGCUUACAAUGAAGCCUAUA................................................... len:25 al:1
....................UGgACAGCUUACAAUGAAG......................................................... len:19 al:74
....................UGgACAGCUUACAAUGAAGCC....................................................... len:21 al:59
....................UGAACAGCUUACAAUGAAGu........................................................ len:20 al:9
....................UGgACAGCUUACAAUGAA.......................................................... len:18 al:65
....................UGAACAGCUUACAAUGAAGCCUAUuU.................................................. len:26 al:3
....................UGgACAGCUUACAAUGAAGCCUAUA................................................... len:25 al:39
....................UGAgCAGCUUACAAUGAA.......................................................... len:18 al:2
....................UGAACAGCUUACAAUGAAu......................................................... len:19 al:3
....................UGAACAGCUUACAAUGAAGCCUAU.................................................... len:24 al:3
....................UGAACAGCUUACAAUGAAGCCUAUA................................................... len:25 al:2
....................UGgACAGCUUACAAUGAAGCCUA..................................................... len:23 al:11
....................UGAACAGCUUACAAUGAA.......................................................... len:18 al:55
..........................................AUAUUUAUUGUACGGUUCUUGUAUGCc........................... len:27 al:1
...........................................UAUUUAUUGUACGGUUCUUGUAUGCUGU......................... len:28 al:11
...........................................cAUUUAUUGUACGGUUCUUGUAUGCUGU......................... len:28 al:1
...........................................UAUUUAUUGUACGGUUCUUGcAUGCUGUUCU...................... len:31 al:1
...........................................UAUUUAUUGUACGGUUCUUGUAUGCUGUUCU...................... len:31 al:4
...........................................UAUUUAUUGUACGGUUCUUGUAUGCUGc......................... len:28 al:1
............................................AUUUAUUGUACGGUUCUUGUAUGCU........................... len:25 al:1
............................................AUUUAUUGUACGGUUCUUGUAUGCUGUUu....................... len:29 al:1
............................................AUUUAUUuUACGGUUCUUGUAUGCUGUU........................ len:28 al:1
............................................AUUUAUUGUACGGUUCUUGUAUGCUGg......................... len:27 al:1
............................................AUUUAUUGUACGGUUCUUGUAUGCc........................... len:25 al:1
............................................AUUUAUUuUACGGUUCUUGUAUGCUGU......................... len:27 al:9
............................................AUUUAUUuUACGGUUCUUGUAUGCUGUUCU...................... len:30 al:2
............................................AUUUAUUGUACGGUUCUUGUAUGCUGUUCUA..................... len:31 al:2
............................................AUUUAUUGUACGGUUCUUGUAUGCUGUUuU...................... len:30 al:1
............................................AUUUAUUGUACGGUUCUUGUAUGCUGUU........................ len:28 al:1
............................................AUUUAUUGUACGGUUCUUGUAUGCUGU......................... len:27 al:1
............................................AUUUAUUGUACGGUUCUUGUAUGCUGUUCU...................... len:30 al:7
............................................AUUUAUUGUACGGUUCUUGUAUGCUGcUCU...................... len:30 al:2
.............................................UUUAUUGUACGGUUCUUGUAUGCUGUUCUA..................... len:30 al:7
.............................................UUUAUUGUACGGUUCUUGUAUGCUGU......................... len:26 al:4
.............................................UUUAUUGUACGGUUaUUGUAUGCUGUUCU...................... len:29 al:1
.............................................UUUAUUGUACGGUUCUUGUAUGCUGUU........................ len:27 al:1
.............................................UUUAUUGUACGGUUCUUGUAUGCUGUUCUAA.................... len:31 al:20
.............................................UUUAUUGUACGGUUCUUGUAUGCUGUUCc...................... len:29 al:1
.............................................UUUAUUGUACGGUUCUUGUAUGCUGUUuUAA.................... len:31 al:11
.............................................UUUAUUGUACGGUUCUUGUAUGCUGc......................... len:26 al:1
.............................................UUUAUUuUACGGUUCUUGUAUGCUGUUCUAA.................... len:31 al:7
.............................................UUUAUUGUACGGUUCUUGUAUGCUGUUCUAu.................... len:31 al:10
.............................................UUUAUUGUACGGUUCUUGUAUGCUGUUCU...................... len:29 al:3
.............................................UUUAUUuUACGGUUCUUGUAUGCUGUUCUA..................... len:30 al:2
.............................................UUUAUUGUACGGUUCUUGUAUGCUGUUC....................... len:28 al:5
.............................................UUUAUUGUACGGUUCUUGUgUGCUGUUCUAA.................... len:31 al:1
.............................................UUUAUUGUACGGUUCUUGUAUGCUGUUCUAc.................... len:31 al:1
.............................................UUUAUUGUACGGUUCUUGUAUGCUGUUCa...................... len:29 al:1
.............................................UUUAUUuUACGGUUCUUGUAUGCUGUUCU...................... len:29 al:1
.............................................UUUAUUGUACGGUUCUUGUAUGCUGUUu....................... len:28 al:2
.............................................UUUAUUGUACGGUUCUUGUAUGCc........................... len:24 al:1
.............................................UUUAUUGUACGGUUCUUGUAUGCUGUUuUA..................... len:30 al:1
..............................................UUAUUGUACGGUUCUUGUAUGCUGUUCUu..................... len:29 al:1
..............................................UUAUUGUACGGUUCUUGUAUGCUGUUCUA..................... len:29 al:1
..............................................UUAUUGUACGGUUCUUGUAUGCUGUUCU...................... len:28 al:4
..............................................UUAUUuUACGGUUCUUGUAUGCUGUUC....................... len:27 al:1
..............................................UUAUUGUACGGUUCUUGUAUGCUGU......................... len:25 al:1
..............................................UUAUUuUACGGUUCUUGUAUGCUGU......................... len:25 al:6
..............................................UUAUUGUACGGUUCUUGUAUGCUGUUCUAAu................... len:31 al:9
...............................................UAUUGUACGGUUCUUGUAUGCUGUUCUAAu................... len:30 al:7
...............................................UAUUGUACGGUUCUUGUAUGCUGUUC....................... len:26 al:2
...............................................UAUUGUACGGUUCUUGUAUGCUGUUCUA..................... len:28 al:2
...............................................UAUUGUACGGUUCUUGUAUGCUGU......................... len:24 al:5
...............................................UAUUGUACGGUUCUUGUAUGCUGUcCUAA.................... len:29 al:1
................................................AUUGUACGGUUCUUGUAUGCUGc......................... len:23 al:2
................................................AUUGUACGGUUCUUGUAUGCUGUUCUAAu................... len:29 al:5
................................................AUUGUACGGUUCUUGUAUGCUGU......................... len:23 al:12
................................................AUUuUACGGUUCUUGUAUGCUGUUCUA..................... len:27 al:4
.................................................UUuUACGGUUCUUGUAUGCU........................... len:20 al:2
.................................................UUGUACGGUUCUUGUAUGCUGUUCUA..................... len:26 al:1
.................................................UUGUACGGUUCUUGUAUGCUGg......................... len:22 al:1
..................................................UGUACGGUUCUUGUAUGCUGU......................... len:21 al:1
..................................................UGUACGGUUCUUGUAUGCU........................... len:19 al:2
..................................................UGUACGGUUCUUGUAUGCUGg......................... len:21 al:1
..................................................UGUACGGUUCUUGUAUGCUGc......................... len:21 al:1
..................................................UGUACGGUUCUUGUAUGCUGUU........................ len:22 al:1
...................................................GUACGGUUCUUGUAUGCUGUUCUA..................... len:24 al:3
...................................................GUACGGUUCUUGUAUGCUGU......................... len:20 al:1
....................................................UACGGUUCUUGUAUGCUGUUC....................... len:21 al:1
....................................................UACGGUUCUUGUAUGCUGUUCUAu.................... len:24 al:1
....................................................UACGGUUCUUGUAUGCUGUUCUA..................... len:23 al:1
.....................................................ACGGUUCUUGUAUGCUGUUCUAAc................... len:24 al:4
.....................................................ACGGUUCUUGUAUGCUGUUCUAu.................... len:23 al:3
.....................................................ACGGUUCUUGUAUGCUGUUCUAA.................... len:23 al:5
.....................................................ACGGUUCUUGUAUGCUGUUCU...................... len:21 al:5
.....................................................ACGGUUCUUGUAUGCUGUUC....................... len:20 al:2
.....................................................ACGGUUCUUGUAUGCUGUUCUAAu................... len:24 al:68
.....................................................ACGGUUCUUGUAUGCUGUUCUA..................... len:22 al:4
......................................................CGGUUCUUGUAUGCUGUUCUAu.................... len:22 al:57
......................................................CGGUcCUUGUAUGCUGUUCUAA.................... len:22 al:1
......................................................CGGUUCUUGUAUGCUGUUCUAA.................... len:22 al:353
......................................................CGGUUCUUGcAUGCUGUUCU...................... len:20 al:1
......................................................CGGUUCUUGUuUGCUGUUCUA..................... len:21 al:1
......................................................CGGUUCUUGUAUGCUGUUCUAAu................... len:23 al:2026
......................................................CGGUUCUUGUAUGCUGUUuUA..................... len:21 al:18
......................................................CGGUUCUUGUAUaCUGUUCUAA.................... len:22 al:1
......................................................CGGcUCUUGUAUGCUGUUCUAA.................... len:22 al:1
......................................................CGGUUCUUGUgUGCUGUUCU...................... len:20 al:2
......................................................CGGUUCUUGUAUGCcGUUCUAA.................... len:22 al:3
......................................................CGGUUCUUGUAUGCUGcUCUAA.................... len:22 al:4
......................................................CGGUUCUUGUAUGCUGUUuUAA.................... len:22 al:40
......................................................CaGUUCUUGUAUGCUGUU........................ len:18 al:1
......................................................CGGUUCUUGUAUGCUGUUu....................... len:19 al:2
......................................................CGGUUCUUGUAUGCU........................... len:15 al:3
......................................................CGGUUCUUGUAUGCUGUUC....................... len:19 al:35
......................................................CGGUUCUUGUAUGCUGUUCUAc.................... len:22 al:4
......................................................CGGUUCUUGUAUGCUGUUCUAAG................... len:23 al:10
......................................................CGGUUCUUGUAUGCUGUUCUu..................... len:21 al:1
......................................................CGGUUCUUGUAUGCUGUUCUAuG................... len:23 al:1
......................................................CGGUcCUUGUAUGCUGUUC....................... len:19 al:2
......................................................CGGUUCUUGUAUGCUGUUuU...................... len:20 al:22
......................................................CGGUUCUUGUAUGCUGUUCUAAc................... len:23 al:142
......................................................CGGUUCUUGUAUGCUGUU........................ len:18 al:18
......................................................CGGUUCUUGUAUGCUGU......................... len:17 al:6
......................................................CGGUUCUUGUAcGCUGUUCUAA.................... len:22 al:1
......................................................CGGUUCUUGUAUGCUGUUuUAAG................... len:23 al:1
......................................................CGGUUCUUGUcUGCUGUUCUAA.................... len:22 al:1
......................................................CGGUUCUUGUAUGCUGUUCUA..................... len:21 al:104
......................................................CGGUUCUUGUAUGCUGUUCg...................... len:20 al:1
......................................................CGGUUCUUGUAUGCUGUUCgA..................... len:21 al:1
......................................................CGGUUCcUGUAUGCUGUUCUAA.................... len:22 al:2
......................................................CGGUUCUUGUAUGCUGUUCUAg.................... len:22 al:1
......................................................CGGUUCUUGUAUGCUGUcCUAA.................... len:22 al:1
......................................................CGGUUCUUGUgUGCUGUUCUAA.................... len:22 al:1
......................................................CGGUUCUUGUAUGCUGUUCUg..................... len:21 al:2
......................................................CGGUUCUUGUAUGCUGUUCUAAa................... len:23 al:51
......................................................CGGUUCUUGUAUGCUGUUCU...................... len:20 al:61
......................................................CGGUUCUUGUAUGuUGUU........................ len:18 al:1
......................................................CGGUUCUUGUAUGCUGUUCc...................... len:20 al:8
.......................................................GGUUCUUGUAUGCUGUUCUAAu................... len:22 al:13
.......................................................GGUUCUUGUAUGCUGUUCUAu.................... len:21 al:1
........................................................GUUCUUGUAUGCUGUUCUAAu................... len:21 al:1
.........................................................UUCUUGUAUGCUGUUCUAAu................... len:20 al:1
..........................................................UCUUGUAUGCUGUUCUAAu................... len:19 al:2
..........................................................UCUUGUAUGCUGUUCUAu.................... len:18 al:1