Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_339:244205-244295 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_4247.ps.pdf
Locus Name: Cluster_4247
AGUCCCCAAGGUUCAGUUGUUGGUGAGGUGCAGAAAACAAUUAUUUUAAUCGUUUUCUCCAUUUCACGAACAACUGAUCUUUAAAAAUAUC
.......((((.(((((((((.((((((((.(((((((.((((...)))).))))))).)))))))).))))))))).))))......... (-35.10)
............UCAGUUGUUGGUGAGGUGCAGAAAACAAUU................................................. len:30 al:1
..................cUUGGUGAGGUGCAGAAAACAAUU................................................. len:24 al:3
..................aUUGGUGAGGUGCAGAAAACAAUU................................................. len:24 al:5
...................UUuGUGAGGUGCAGAAAACAAUU................................................. len:23 al:3
...................UUGGUGAGGUGCAGAAAACg.................................................... len:20 al:1
...................UUGGUGAGGUGCgGAAAAC..................................................... len:19 al:4
...................UUGGcGAGGUGCAGAAAACAAUU................................................. len:23 al:36
...................UUGGUGAGGUGCAGgAAACAAUU................................................. len:23 al:24
...................UUGGUGAGGUGCAGAAAAuAAUU................................................. len:23 al:9
...................UUGGUGAGGUGCAGAAAACAAUUAUaU............................................. len:27 al:3
...................UUGGUGAGGUGCAGAAAcCAAU.................................................. len:22 al:1
...................UUGGUGAGGUGCAGAAAcCAAUU................................................. len:23 al:48
...................cUGGUGAGGUGCAGAAAACAAU.................................................. len:22 al:4
...................UUGGUGAGGUGCAGAAAACAAUUAUUUU............................................ len:28 al:2
...................UUGGUGAGGUGCcGAAAACAAUU................................................. len:23 al:4
...................UUGGUGAGGUGCAGAAAACAAUUuUUUU............................................ len:28 al:1
...................UUGGUGAGGUGCAGAAAc...................................................... len:18 al:1
...................UUGGUGAGGUGCAGA......................................................... len:15 al:6
...................UUGGUGAGGcGCAGAAAACAAUU................................................. len:23 al:26
...................UUGGUGAGGUGCuGAAAACAAUU................................................. len:23 al:19
...................UUGGUGAGGUGCAGAuAACAAUU................................................. len:23 al:2
...................UUGGUGAGGUGCAcAAAACAAUU................................................. len:23 al:1
...................UUGGUGAGGUGuAGAAAACAAUU................................................. len:23 al:26
...................UUGGaGAGGUGCAGAAAACAAUU................................................. len:23 al:6
...................UUGGUGAGGUGCAGAAAAaAAUU................................................. len:23 al:1
...................UUGGUGAGGUGCAGAAAACAAUUAc............................................... len:25 al:4
...................UUGGUGAGGaGCAGAAAACAAUU................................................. len:23 al:1
...................UUGGUaAGGUGCAGAAAACAAUU................................................. len:23 al:3
...................UUGGUGAGGUGCAGAAAAC..................................................... len:19 al:301
...................UUGGUGAGGUGCAGAAAACAAU.................................................. len:22 al:689
...................UUGGUGAGGUGCAGAAAu...................................................... len:18 al:3
...................aUGGUGAGGUGCAGAAAACAAU.................................................. len:22 al:2
...................UUaGUGAGGUGCAGAAAACAAU.................................................. len:22 al:1
...................UUGGUGgGGUGCAGAAAACAAUUAUUUU............................................ len:28 al:1
...................UUGGUGAGGUGCAGAAAACAAUUc................................................ len:24 al:18
...................cUGGUGAGGUGCAGAAAACA.................................................... len:20 al:1
...................UcGGUGAGGUGCAGAAAACAAU.................................................. len:22 al:4
...................UUGGUGAGGUGCAGAAAACgAUU................................................. len:23 al:55
...................UUGGUGAGGUGCAGAAgACAAU.................................................. len:22 al:2
...................UUGGUGAGGUGCAGAAAACAAUa................................................. len:23 al:18
...................UUGGUGAGGUGCAGAAuA...................................................... len:18 al:1
...................cUGGUGAGGUGCAGAAAACAAUUA................................................ len:24 al:1
...................UUGGUGAGGUGCAGAAAACAAUUAUa.............................................. len:26 al:1
...................UUGGUGAGGUGaAGAAAACAAUU................................................. len:23 al:1
...................UUGGUGAGGUGCAGAAAgCAAU.................................................. len:22 al:3
...................UUGGUGAGGUGCAGAAAACAAUUu................................................ len:24 al:278
...................UUGGUGAGGUGCAaAAAACAAUU................................................. len:23 al:6
...................UaGGUGAGGUGCAGAAAACAAUU................................................. len:23 al:12
...................UUGGUGAGGUGuAGAAAA...................................................... len:18 al:1
...................gUGGUGAGGUGCAGAAAACAAUU................................................. len:23 al:1
...................UUGcUGAGGUGCAGAAAACAAUU................................................. len:23 al:1
...................UUGGUGAGGUGCAGAgAAC..................................................... len:19 al:1
...................UUGGUGAGGUGCAGAgAACAAU.................................................. len:22 al:3
...................UUGGUGAGGUGCAGAAgA...................................................... len:18 al:1
...................UUGGUGAGGUGCAGAAAACAgUU................................................. len:23 al:19
...................UUGGUGAGGUGCAGAAAACAAc.................................................. len:22 al:52
...................UUGGUGAGGUGCAGAAAACAAUU................................................. len:23 al:9309
...................UUGaUGAGGUGCAGAAAACAAUU................................................. len:23 al:12
...................UUGGUGAGGUGCAGAAAACAuUU................................................. len:23 al:8
...................UUGGUGAGGUGCAGcAAACAAUU................................................. len:23 al:1
...................UUGGUGAGGUGCAGAAAACAAaU................................................. len:23 al:7
...................UUGGUGAGGUGCAGAAAACAAUUAU............................................... len:25 al:8
...................UUGGUGAGGUGCAGAAgAC..................................................... len:19 al:1
...................UUGGUGuGGUGCAGAAAACAAUU................................................. len:23 al:10
...................UUGGUGAaGUGCAGAAAACAAUU................................................. len:23 al:9
...................UUcGUGAGGUGCAGAAAACAAUU................................................. len:23 al:2
...................UgGGUGAGGUGCAGAAAACAAUU................................................. len:23 al:2
...................UUGGUGAGGUaCAGAAAAC..................................................... len:19 al:1
...................UUGGUGAGGUGCAGAAAACA.................................................... len:20 al:123
...................UUGGUGAGGUGCAGAAAuCAAUU................................................. len:23 al:2
...................UUGGUGAGGUGCuGAAAAC..................................................... len:19 al:2
...................UUGGUGAGGUGCAGAAAAa..................................................... len:19 al:3
...................UcGGUGAGGUGCAGAAAACAAUU................................................. len:23 al:31
...................UUGGUGAGGUGCAGAAAACAAUg................................................. len:23 al:14
...................aUGGUGAGGUGCAGAAAACAAUU................................................. len:23 al:22
...................UUGGUGAuGUGCAGAAAACAAUU................................................. len:23 al:2
...................UUGGUGAGGcGCAGAAAACAAUUA................................................ len:24 al:1
...................UUGGUGAGGgGCAGAAAACAAUU................................................. len:23 al:1
...................UUGGUGAGGUGCAGAA........................................................ len:16 al:3
...................UUGGUGAGGUGCAGAAAACAAgU................................................. len:23 al:18
...................UUGGUGAGGUGCAGAAAACu.................................................... len:20 al:12
...................UUGGUGAGGUGCAGAAAACAAUUuU............................................... len:25 al:17
...................UUGGUGAGGUGCAGAAAACAc................................................... len:21 al:2
...................UUGGUGAGGUGCAGAAAACAgU.................................................. len:22 al:5
...................UUGGUGAGGUuCAGAAAACAAUU................................................. len:23 al:2
...................UUGGUGAGGUGCAuAAAAC..................................................... len:19 al:1
...................UUGGUGAGGUGCAGAgAACAAUU................................................. len:23 al:30
...................UUGGUGAGGcGCAGAAAAC..................................................... len:19 al:1
...................UUGuUGAGGUGCAGAAAACAAUU................................................. len:23 al:1
...................UUGGcGAGGUGCAGAAAACAAU.................................................. len:22 al:1
...................UUGGUGAGaUGCAGAAAACAAUU................................................. len:23 al:8
...................UUGGUGcGGUGCAGAAAACAAUU................................................. len:23 al:2
...................UUGGUGAGGUGCAaAAAACAAU.................................................. len:22 al:1
...................UUGGUGAGGUGCAGAAAACAAa.................................................. len:22 al:1
...................UUGGUGAGGUGCAGAAAACAA................................................... len:21 al:17
...................UUaGUGAGGUGCAGAAAACAAUU................................................. len:23 al:19
...................cUGGUGAGGUGCAGAAAACAAUU................................................. len:23 al:53
...................UUGGUGAGGUGCAGAAAACc.................................................... len:20 al:1
...................UUGGUGAGGcGCAGAAAACAAU.................................................. len:22 al:1
...................UUGaUGAGGUGCAGAAAACAAU.................................................. len:22 al:2
...................UUGGUGgGGUGCAGAAAACAAUU................................................. len:23 al:42
...................UUGGUGAGGUGCAGAAgACAAUU................................................. len:23 al:33
...................UUGGUGAGGUGCAGAAAACAAUUuUUU............................................. len:27 al:10
...................UUGGUGAGGUGCAGAAAACAu................................................... len:21 al:2
...................UUGGUGAGGUGCgGAAAACAAU.................................................. len:22 al:2
...................UUGGUGAGGUGCAGAAAA...................................................... len:18 al:30
...................UUGGUGuGGUGCAGAAAACAAU.................................................. len:22 al:2
...................UUGGUuAGGUGCAGAAAACAAUU................................................. len:23 al:1
...................UUGGUGAGGUGCAGAAuACAAUU................................................. len:23 al:1
...................UUGGUGAGGUGCAGAAAgCAAUU................................................. len:23 al:44
...................aUGGUGAGGUGCAGAAAACAAUUA................................................ len:24 al:1
...................UUGGUGAGGUGCgGAAAACAAUU................................................. len:23 al:60
...................UUGGUGAGGUGuAGAAAACAAU.................................................. len:22 al:1
...................UUGGUGAGGUGCAGAAAACAcUU................................................. len:23 al:1
...................UUGGUGgGGUGCAGAAAACAAU.................................................. len:22 al:7
...................UUGGUGAGGUGCAGAAAACuAUU................................................. len:23 al:1
...................UUGGUGAGGUGCAGAAAACAAUUuUU.............................................. len:26 al:10
...................UUGGUGAGGUGCAGAAgACA.................................................... len:20 al:1
...................UUGGUGAGuUGCAGAAAACAAUU................................................. len:23 al:2
...................UUGGUGAGGUGCAGAAAAu..................................................... len:19 al:18
...................UUGGUGAGGUGCAGAAAACAAUUA................................................ len:24 al:29
...................UcGGUGAGGUGCAGAAAAC..................................................... len:19 al:1
...................UUGGUGAGGUGCAGAAAACAAcU................................................. len:23 al:22
...................UUGaUGAGGUGCAGAAAA...................................................... len:18 al:1
...................UUGGUGAGGUGCAGuAAACAAUU................................................. len:23 al:1
...................UUGGUGAGGUGCAGAcAACA.................................................... len:20 al:1
...................UUGaUGAGGUGCAGAAAACA.................................................... len:20 al:1
...................UUGGUGAGGUGCAGAAAACAAUUAUU.............................................. len:26 al:12
...................UUGGUGAGGUaCAGAAAACAAUU................................................. len:23 al:16
...................UUGGgGAGGUGCAGAAAACAAUU................................................. len:23 al:1
...................aUGGUGAGGUGCAGAAAAC..................................................... len:19 al:1
...................UUGGUGAGGUGCAGAAAACAuU.................................................. len:22 al:1
...................UUGGUGAGGUGCAGAAAACAAUc................................................. len:23 al:675
...................UUGGUGAGGUGCAGAAcACAAUU................................................. len:23 al:1
...................UUGGUGAGGUGCAGAcAACAAUU................................................. len:23 al:2
...................UUGGUGAGGUGCAGAAAgC..................................................... len:19 al:4
...................UUGGUGAGGUGCAGAAAACAg................................................... len:21 al:1
...................UUGGUGAGGUGCAGAAAuCAAU.................................................. len:22 al:1
....................UGGUGAGGUGCAGAgAACAAUU................................................. len:22 al:3
....................cGGUGAGGUGCAGAAAACAAUU................................................. len:22 al:6
....................UGGUGAGGUGCAGAAAAuAAUU................................................. len:22 al:3
....................UGGUGcGGUGCAGAAAACAAUU................................................. len:22 al:1
....................UGGUGAGGUGCAGAAAACAAUUAUU.............................................. len:25 al:3
....................UGGUGAGGUGCAGAAAACAAUU................................................. len:22 al:1781
....................UGGUGAGGUGCAGAAgACAAU.................................................. len:21 al:1
....................UGGaGAGGUGCAGAAAACAAUU................................................. len:22 al:1
....................UGGUGAGGUGCAGAAAuCAAUU................................................. len:22 al:2
....................UGGUGAGGUGCAGAAAACAAgU................................................. len:22 al:1
....................UGGUGuGGUGCAGAAAACAAUU................................................. len:22 al:1
....................UGGUGAGGUGCAGAAAACAAUUAUUUUAu.......................................... len:29 al:1
....................aGGUGAGGUGCAGAAAACAAU.................................................. len:21 al:1
....................UGGUGAGaUGCAGAAAACAAUU................................................. len:22 al:4
....................UGGUGAGGUGCAGAAAgC..................................................... len:18 al:2
....................UGGUGAGGUGCAGAAAACA.................................................... len:19 al:24
....................UGGUGAGGUGCgGAAAACAAUUAUU.............................................. len:25 al:1
....................UGGUGAGGUGCAGAAAACAAU.................................................. len:21 al:109
....................UGGUGAGGUGCAGAAAgCAAUU................................................. len:22 al:11
....................UGGUGAGGUGCAGAAAACAAc.................................................. len:21 al:4
....................UGGUGAGGUGCAaAAAACAAUU................................................. len:22 al:3
....................UGGUGAGGcGCAGAAAACAAU.................................................. len:21 al:1
....................UGGUGAGGUGCAaAAAACAAU.................................................. len:21 al:1
....................UGGUGAGGUGCgGAAAACA.................................................... len:19 al:1
....................UGGUGAGGUGCAGAAAACAAUUg................................................ len:23 al:1
....................UGGUGAGGUGCAGAAAACAAUUAUUUUAAU......................................... len:30 al:2
....................UuGUGAGGUGCAGAAAACAAUU................................................. len:22 al:3
....................UGGUGAGGUGCgGAAAACAAUU................................................. len:22 al:16
....................UGGUGAGGUGuAGAAAACAAUU................................................. len:22 al:6
....................UGGUGAGGUGCAGAAAACAAUc................................................. len:22 al:156
....................UGGUGAGGUGCAGAAAAC..................................................... len:18 al:49
....................UGGUGAGGUGCAGAAgACAAUU................................................. len:22 al:4
....................UGGUGAGGUGCAGAAAACAgU.................................................. len:21 al:1
....................UaGUGAGGUGCAGAAAACAAUU................................................. len:22 al:5
....................UGGUuAGGUGCAGAAAACAAUU................................................. len:22 al:1
....................UGGUGAGGUGCAGAAAACAgUU................................................. len:22 al:9
....................UGGUGAGGUGCgGAAAACAAU.................................................. len:21 al:1
....................UGGUGAGGUaCAGAAAACAAUU................................................. len:22 al:3
....................UaGUGAGGUGCAGAAAAC..................................................... len:18 al:1
....................UGGUGAGGUGCAGAAAgCA.................................................... len:19 al:2
....................UGGcGAGGUGCAGAAAACAAUU................................................. len:22 al:9
....................UGGUGAGGUGCAGAAAACAAUUA................................................ len:23 al:2
....................UGGUGAGGcGCAGAAAACAAUU................................................. len:22 al:4
....................UGGUGAGGUGCAGAAAACgAUU................................................. len:22 al:10
....................UGGUGAGGUGCAGAAAACAuU.................................................. len:21 al:2
....................UGGUGAGGUGCAGAAAACAAUa................................................. len:22 al:7
....................UGGUGAGGUGCAGAAAACAAcU................................................. len:22 al:1
....................UGGUGAGGUGCAGAAAACAAUg................................................. len:22 al:2
....................UGGUGAGGUGCAGAAAACAAUUu................................................ len:23 al:29
....................UGGUGgGGUGCAGAAAACAAUU................................................. len:22 al:13
....................UGGaGAGGUGCAGAAAACAAU.................................................. len:21 al:1
....................aGGUGAGGUGCAGAAAACAAUU................................................. len:22 al:7
....................UGGUGAGGUGCAGAAAACAAUUAU............................................... len:24 al:13
....................UGGUGAGGUGCAGAAAgCAAU.................................................. len:21 al:1
....................UGGUGAGGUGCAGAAAcCAAUU................................................. len:22 al:12
....................UGGUGcGGUGCAGAAAACAAUUA................................................ len:23 al:1
....................UGGUGAGGUGCAGgAAACAAUU................................................. len:22 al:4
....................UGGUGAGGUGCAGAAAACAA................................................... len:20 al:4
....................UGGUGAGGUGCAGAAAACu.................................................... len:19 al:9
....................UGGUGAGGUGCuGAAAACAAUU................................................. len:22 al:11
.....................GGUGAGGUGCAGAAAACAAUU................................................. len:21 al:7
.....................GGUGAGGUGCAGAAAACAAU.................................................. len:20 al:1
.....................uGUGAGGUGCAGAAAACAAUU................................................. len:21 al:1
.....................GGUGgGGUGCAGAAAACAAUU................................................. len:21 al:1
........................GAGGUGCAGAAAACAAUU................................................. len:18 al:2
........................aAGGUGCAGAAAACAAUU................................................. len:18 al:1
.....................................CgAUUAUUUUAAUCGUUUUCUCC............................... len:23 al:1
.........................................UAUUUUAAUCGUUUUCUCCAUUUCACGAAC.................... len:30 al:3
.........................................UAUUUUAAUCGUUUUCUCCAUUUCACGAACA................... len:31 al:21
.........................................UAUUUUAAUCGUUUUCUCCAUUUCACu....................... len:27 al:1
.........................................UAUUUUAAUCGUUUUCUCCAUUUCACa....................... len:27 al:1
..........................................AUUUUAAUCGUUUUCUCCAUUUCACGAACA................... len:30 al:6
..........................................AUUUUAAUCGUcUUCUCCAUUUCACGAACA................... len:30 al:1
...........................................UUUUAAUCGUUUUCUCCAUUUCACGAACA................... len:29 al:1
................................................AUCGUUUUCUCCAUUUCACGA...................... len:21 al:2
.................................................UCGUUUUCUCCAUUUCACa....................... len:19 al:6
.................................................UCGUUUUCUCCAUUUCACGAAC.................... len:22 al:173
.................................................UCGUcUUCUCCAUUUCACGAAC.................... len:22 al:1
.................................................UCGUUUgCUCCAUUUCACGAACA................... len:23 al:1
.................................................UCGUUUUCUCCAUUUCACGAACAu.................. len:24 al:1
.................................................UCGUUUUCUCCAUUUCACaAAC.................... len:22 al:1
.................................................UCGUUUUCUCCAUUUCAuGAACA................... len:23 al:1
.................................................UCGUUUUCUCCAUUUCACGAACA................... len:23 al:74
.................................................UCGUUUUCUCCAUUUCACGAA..................... len:21 al:5
.................................................UCGUUUUCUCCAUUUCACGu...................... len:20 al:1
.................................................UCGUUUUCUCCAUcUCACGAACA................... len:23 al:1
.................................................UCGUUUUCUCCAUUUCACGAACAA.................. len:24 al:5
.................................................UCGUUcUCUCCAUUUCACGAAC.................... len:22 al:1
.................................................UCGUUUUCUCCAUUcCACGAAC.................... len:22 al:1
.................................................UCGUUUUCcCCAUUUCACGAACA................... len:23 al:1
.................................................UCGUUUUCUCCAUUUCAaGAACA................... len:23 al:1
.................................................UCGUUUUCcCCAUUUCACGAAC.................... len:22 al:1
.................................................UCGUUUUCUCCAUUUCA......................... len:17 al:3
.................................................UCGUUUUCUCCAUUUCACGAAu.................... len:22 al:37
.................................................UCGUUUUCUCCAUUUCACu....................... len:19 al:5
.................................................UCGUUUUCUCCAUcUCACGAAC.................... len:22 al:1
.................................................UCGUUUUCUCCAcUUCACGA...................... len:20 al:1
.................................................UCGUUUUCUCCAUUUCACGAAa.................... len:22 al:1
.................................................UCGUUUcCUCCAUUUCACGAAC.................... len:22 al:1
.................................................UCGUUUUCUCCAcUUCACGAAC.................... len:22 al:1
.................................................UCGUUUUCUCCAUUUCACGAACu................... len:23 al:32
.................................................UCGUUUUCUCCAUUUCACGg...................... len:20 al:1
.................................................UCGUUUUCUCCAUUUCACGAACg................... len:23 al:2
.................................................UCGUUUUCUCCAUUUCACG....................... len:19 al:37
.................................................UCGUUUUCUCCAUUUCACGAACuA.................. len:24 al:1
.................................................UCGUUUUCUCCAUUUCACGAACc................... len:23 al:1
.................................................UCGUUUUCUCCAUUUCAC........................ len:18 al:21
...................................................GUUUUCUCCAUUUCACGAACA................... len:21 al:2
....................................................UUUUCUCCAUUUCACGAAC.................... len:19 al:2
.....................................................UUUCUCCAUUUCACGAAC.................... len:18 al:2
.......................................................................AACUGAUCUUUAAAAAUAU. len:19 al:1