Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_334:153554-153646 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_4229.ps.pdf
Locus Name: Cluster_4229
AGAUUAUGCAAUAUUUUCUUUGCAGGUACAGUUAUAAGGUCCCCUUGGUGGACCUUAUAACUGUACCUGCCAAGAAAGCUGAGCAUUUAAUUC
.....((((....(((((((.((((((((((((((((((((((....).))))))))))))))))))))).)))))))....))))....... (-46.90)
..................UUUGCAGGUACAGUUAUAAGG...................................................... len:21 al:1
..................UUUGCAGGUACAGUUAUA......................................................... len:18 al:1
...................UUGCAGGUACAGUUAUAgGGU..................................................... len:21 al:1
...................UUGCAGGUACAGUUAUAAGGUCu................................................... len:23 al:153
...................UUGCAGGUACAGUUAcAAGGUCC................................................... len:23 al:1
...................UUGCAGGUACAGUUAUAgGG...................................................... len:20 al:1
...................UUGCAGGUACAGUUAUAAGGUCuC.................................................. len:24 al:1
...................UUGCAGGUACAGcUAUAAG....................................................... len:19 al:1
...................UUGCAGGUACAGUUAUAAGGg..................................................... len:21 al:1
...................UUGCuGGUACAGUUAUAAGGU..................................................... len:21 al:1
...................UUGCAGGUACAGUUAUAAG....................................................... len:19 al:26
...................UUGCAGGUACAGUUAUAAGGUC.................................................... len:22 al:140
...................UUGCAGGUACAGUUAUAAa....................................................... len:19 al:2
...................UUGCAGGUACAGUUAUAAGGUCa................................................... len:23 al:34
...................UUGCAGGUACAGUUAUA......................................................... len:17 al:7
...................UUGCgGGUACAGUUAUAAG....................................................... len:19 al:1
...................UUGCAGGUACAGUUgUAAGGUC.................................................... len:22 al:1
...................cUGCAGGUACAGUUAUAAGG...................................................... len:20 al:2
...................UcGCAGGUACAGUUAUAAGGUC.................................................... len:22 al:1
...................UUGCAGGUACAGUUAUAA........................................................ len:18 al:6
...................UUGCAGGUACAGUUAUAAu....................................................... len:19 al:13
...................UUGCAGGUACAGUUAUAAGGUCC................................................... len:23 al:100
...................UUGCAGGUACAGUUAUAAGGUCg................................................... len:23 al:2
...................UUGCAGGUACAGUUAUgAGGU..................................................... len:21 al:1
...................UUGCAGGUACAGUUAUAAGGc..................................................... len:21 al:8
...................UUGCAGGUACAGcUAUAAGG...................................................... len:20 al:1
...................UUGCAGGUACgGUUAUAAGGUC.................................................... len:22 al:1
...................UUGCAGGUACAGUUAUAAGGU..................................................... len:21 al:90
...................UUGCAGGUACAGUUAUAAGc...................................................... len:20 al:2
...................UUGCAGGUACAGUUAUAAGGUCCa.................................................. len:24 al:1
...................UUGCAGGUACAGUUAUAAGGUu.................................................... len:22 al:31
...................UUGCAGGUACAGUUAUAAGGa..................................................... len:21 al:2
...................UUGCAGGUACAGUUAUAAGa...................................................... len:20 al:9
...................UUGCAGGUAuAGUUAUAAGG...................................................... len:20 al:1
...................UUGCAGGUACAGUUAUgAGGUCC................................................... len:23 al:2
...................UUGCAGGUACgGUUAUAAGGUCC................................................... len:23 al:1
...................UUaCAGGUACAGUUAUAAGGU..................................................... len:21 al:1
...................UUGCAGaUACAGUUAUAAGGUC.................................................... len:22 al:1
...................UUGCAGGUACAGUUAUAAc....................................................... len:19 al:2
...................UUGCAGGUACAGUUAUgAGG...................................................... len:20 al:1
...................UUGCcGGUACAGUUAUAAGGUCC................................................... len:23 al:1
...................UUGCAGGUACAGUUAUAAGu...................................................... len:20 al:17
...................UUGCAGGUACAGUUAUAAGG...................................................... len:20 al:87
...................UUGCAGGUACAGcUAUAAGGUC.................................................... len:22 al:1
...................UUGCAGGUACAGUUAUAgGGUC.................................................... len:22 al:4
...................UUGCAGGUACAGUUAUAAGGUa.................................................... len:22 al:10
...................cUGCAGGUACAGUUAUAAG....................................................... len:19 al:1
....................UGCAGGUACAGUUAUA......................................................... len:16 al:3
....................UGCAGGUACAGUUAUAcGGUC.................................................... len:21 al:1
....................UGCAGaUACAGUUAUAAGGUC.................................................... len:21 al:1
....................UGCAGGUgCAGUUAUAAGGUC.................................................... len:21 al:1
....................UGCAGGUACAGUUAUAAGGUCC................................................... len:22 al:398
....................UGCAGGUACAGUUAUAAGGUCCCaUU............................................... len:26 al:1
....................UGCAGGUACAGUUAUAAGGcCC................................................... len:22 al:2
....................UGCgGGUACAGUUAUAAGG...................................................... len:19 al:1
....................UGCAGGUACAGUUuUAAGGU..................................................... len:20 al:1
....................UGCAGGUACgGUUAUAAGGU..................................................... len:20 al:2
....................UGCAGGUACAGUUAUgAGGUC.................................................... len:21 al:1
....................UGCAGGUACAGUUAUAAGGa..................................................... len:20 al:2
....................UGCAGGUACAGUUAUAAGGc..................................................... len:20 al:16
....................UGCAGGUACAGUUAUAAGaU..................................................... len:20 al:9
....................UGCAGGUACAGUUAaAAG....................................................... len:18 al:1
....................UGCAGGUACAGcUAUAAGGU..................................................... len:20 al:2
....................UGCAGGUACAGUUAUAAGc...................................................... len:19 al:2
....................UGCgGGUACAGUUAUAAG....................................................... len:18 al:1
....................UGCAGGUACAGUUAUAuGGUC.................................................... len:21 al:1
....................UGCAGGUACAGUUAUAgGGU..................................................... len:20 al:3
....................UGCAGGUACAGUUAcAAGG...................................................... len:19 al:1
....................UGCAGGUACAGUUAUAgGGUC.................................................... len:21 al:5
....................UGCAGGUACAGUUAUAAGGUCCCu................................................. len:24 al:2
....................UGCAGGUACAGUUAUAAGGUCa................................................... len:22 al:91
....................UGCAGGUACAGUUAUAAGGcC.................................................... len:21 al:3
....................UGCAGGUACAGUUAUAAGGUCuCC................................................. len:24 al:2
....................UGCAGGcACAGUUAUAAGGUC.................................................... len:21 al:2
....................UGCAGGUACgGUUAUAAGGUCC................................................... len:22 al:4
....................UGCAGGUACAGUUAUAAa....................................................... len:18 al:3
....................UGCAaGUACAGUUAUAAGGUCC................................................... len:22 al:1
....................UGuAGGUACAGUUAUAAG....................................................... len:18 al:1
....................UGCAGGUACAGUUAUAAGG...................................................... len:19 al:117
....................UGuAGGUACAGUUAUAAGGUC.................................................... len:21 al:1
....................UGCAGGUACgGUUAUAAGG...................................................... len:19 al:1
....................UGCAGGUACAGUUAUAgGGUCC................................................... len:22 al:3
....................UGCAGGUACAGUUAUAA........................................................ len:17 al:4
....................UGCAGGUACAGUUAUAAGGUC.................................................... len:21 al:392
....................UGCAGGUACAGUUAUAAGGUCCC.................................................. len:23 al:12
....................UGCgGGUACAGUUAUAAGGUC.................................................... len:21 al:8
....................UGCAGGUACAGUUAUAAGGUCCa.................................................. len:23 al:2
....................UGCAGGUACAGUUAUAAGGUu.................................................... len:21 al:81
....................UGCAGGUACAGUUAUgAGGUCC................................................... len:22 al:2
....................UGCAGGUACAGUUAcAAGGUCC................................................... len:22 al:1
....................UGCAGGUACAGUUAUAAGGUCg................................................... len:22 al:9
....................UGCAGGUACAGcUAUAAGGUC.................................................... len:21 al:1
....................UGCAGGUACAGUUAUAAG....................................................... len:18 al:79
....................UGCAGGUACAGUUAUAAGGgCC................................................... len:22 al:1
....................UGCAGGUACAGUUAUgAGG...................................................... len:19 al:2
....................UGCAGGUgCAGUUAUAAGGU..................................................... len:20 al:2
....................UGCAGGcACAGUUAUAAGGUCC................................................... len:22 al:1
....................UGCAGGUACAGUUAUAAGGUCCaC................................................. len:24 al:1
....................UGCAGGUACAGUUAUAAGa...................................................... len:19 al:20
....................UGCAGGUACAGUUAUAAGGUa.................................................... len:21 al:13
....................UGCAGGUACAGUUAUAAGGUCu................................................... len:22 al:330
....................UGCAGGUACAGUUAUAAGu...................................................... len:19 al:14
....................UGCAGGUgCAGUUAUAAGGUCC................................................... len:22 al:4
....................UGCAGGUACAGUUAUAAGGU..................................................... len:20 al:148
....................UGCAGGUACAGUUAUAAc....................................................... len:18 al:1
....................UGCAGGUACAGUUAUAAu....................................................... len:18 al:13
.....................GCAGGUACAGUUAUAAGGUCC................................................... len:21 al:4
.....................GCAGGUACAGUUAUAAGGUu.................................................... len:20 al:1
.....................GCAGGUACAGUUAUAAGaU..................................................... len:19 al:1
.....................GCAGGUACAGUUAUAAGGcC.................................................... len:20 al:1
.....................GCAGGUACAGUUAUAAGGU..................................................... len:19 al:2
.....................GCAGGUACAGUUgUAAGGUC.................................................... len:20 al:1
.....................GCAGGUACAGUUAUAAGG...................................................... len:18 al:4
.....................GCAGGUACAGUUAUAAGGUCa................................................... len:21 al:5
.....................GCAGGUACAGUUAUAAGGUC.................................................... len:20 al:11
.....................GCAGGUACAGUUAUAAGGUCu................................................... len:21 al:10
......................CAGGUACAGUUAUAAGGUC.................................................... len:19 al:1
.......................AGGUACAGUUAUAAGG...................................................... len:16 al:1
.......................AGGUACAGUUAUAAGGUCa................................................... len:19 al:2
.......................AGGUACAGUUAUAAGGUC.................................................... len:18 al:1
..........................UACAGUUAUAAGGUCCCu................................................. len:18 al:1
........................................CCCCUUGGUGGACCUUAUAACUGUACa.......................... len:27 al:1
.........................................CCCUUGGUGGACCUUAUAACUGUACu.......................... len:26 al:1
.........................................CCCUUGGUGGACCUUAUAACUGUACCUGC....................... len:29 al:1
.........................................CCCUUGGUGGACCUUAUAACUGUACC.......................... len:26 al:1
..........................................CCUUGGUGGACCUUAUAACUGUACCUGCCA..................... len:30 al:1
..........................................CCUaGGUGGACCUUAUAACUGUACCUGCCA..................... len:30 al:1
..........................................CCUUGGUGGACCUUAUAACUGUACu.......................... len:25 al:1
..........................................CCUUGGUGGACCUUAUAACUGUACC.......................... len:25 al:2
...........................................CUUGGUGGACCUUAUAACUGUACC.......................... len:24 al:1
..................................................GACCUUAUAACUGUACCUc........................ len:19 al:1
..................................................GACCUUAUAACUGUACCUGu....................... len:20 al:27
..................................................GACCUUAUAACUGUACCUGC....................... len:20 al:59
..................................................GACCUUAUAACUGUACCUGCCc..................... len:22 al:1
..................................................GACCUUAUAACUGUACCUGCCu..................... len:22 al:10
..................................................GACCUUAUAACUGUACCU......................... len:18 al:2
..................................................GACCUUAUAACUGUACCUG........................ len:19 al:1
..................................................GACCUUAUAACUGUACCUGCCAg.................... len:23 al:1
..................................................GACCUUAUAACUGUACCUGa....................... len:20 al:5
..................................................GACCUUAUAACUGUACCUGCCAc.................... len:23 al:4
..................................................GACCUUAUAACcGUACCUGC....................... len:20 al:1
..................................................GACCUUAUAACUGUACCUGCCg..................... len:22 al:2
..................................................GACCUUAUAACUGUACCUGCCA..................... len:22 al:30
..................................................GACCUUAUAACUGcACCUGCCA..................... len:22 al:1
..................................................GACCUUAUAACUGUACCUGCCAA.................... len:23 al:3
..................................................GACCUUAUAACUGUACCUGCCAu.................... len:23 al:40
..................................................GACCUUAUAACUGUACCUGCuA..................... len:22 al:1
..................................................GACCUUAUAACUGUACCUu........................ len:19 al:3
..................................................GgCCUUAUAACUGUACCUGC....................... len:20 al:1
..................................................GACCUUAUAACUGUACCUGCu...................... len:21 al:4
..................................................GACCUUAUAACUGUACCUGCC...................... len:21 al:8
..................................................GACCcUAUAACUGUACCUGC....................... len:20 al:1
..................................................GACCUUAUAACUGUACCUa........................ len:19 al:2
..................................................GACCUUAUgACUGUACCUGCCA..................... len:22 al:1
..................................................aACCUUAUAACUGUACCUGC....................... len:20 al:3
..................................................GACCUUAcAACUGUACCUGCC...................... len:21 al:1
...................................................uCCUUAUAACUGUACCUGCCAAG................... len:23 al:1
...................................................ACCUUAUAACUGUACCUG........................ len:18 al:7
...................................................ACCUUAUAACUGUACCUGCCAAGu.................. len:24 al:2
...................................................ACCUUAUAACUGUACCUGg....................... len:19 al:1
...................................................ACCUUcUAACUGUACCUGCCA..................... len:21 al:2
...................................................ACCUUAUAgCUGUACCUGCCAA.................... len:22 al:1
...................................................ACCUUAUAACUGUACCUGCCg..................... len:21 al:5
...................................................ACCUUAUAACUGUACCUGu....................... len:19 al:6
...................................................ACCUUAUAACUGUACCUGCCgA.................... len:22 al:3
...................................................ACCUUAUAACaGUACCUGCCAA.................... len:22 al:1
...................................................AaCUUAUAACUGUACCUGCCAAG................... len:23 al:1
...................................................ACCUUAUAACUGUACCUGCCAAc................... len:23 al:1
...................................................ACCUUAUAACUGUACCUGCCc..................... len:21 al:5
...................................................cCCUUAUAACUGUACCUGCCAAG................... len:23 al:1
...................................................AaCUUAUAACUGUACCUGCCAA.................... len:22 al:1
...................................................ACCUUAUAACUGUACCUGCCAAu................... len:23 al:21
...................................................ACCUUAUAACUGUACCU......................... len:17 al:1
...................................................ACCUUAUAcCUGUACCUGC....................... len:19 al:1
...................................................ACCUUAUAACUGUACCUGaC...................... len:20 al:1
...................................................ACCUUAUAACUGUACCUGCCAg.................... len:22 al:1
...................................................ACCUUAUAACUGUACCUGCCu..................... len:21 al:13
...................................................ACCUUAUAACUGUACCUGCCAAa................... len:23 al:4
...................................................ACCUUAUAACUGUACCUGCCgAG................... len:23 al:1
...................................................ACCUUAUAACUGUACCUGCCAAG................... len:23 al:75
...................................................ACCUUAUAACUGUACCUGCCAu.................... len:22 al:77
...................................................ACCUUAUAACUGUACCUGCu...................... len:20 al:13
...................................................ACCUUAUAACUGUACCUGC....................... len:19 al:16
...................................................ACCUUAUAACUGUACCUGCCAc.................... len:22 al:13
...................................................ACCUUAUAACUGUACCUGCCAA.................... len:22 al:155
...................................................ACCUUAUAACUGUACuUGCCAAG................... len:23 al:1
...................................................ACCUUAUAACUGUACCUa........................ len:18 al:2
...................................................ACCUUAUAACUGUACCUGCC...................... len:20 al:67
...................................................ACCUUAUAACUGUACCUGCCA..................... len:21 al:103
....................................................CCUUAUAACUGUACCUGCCAAGAu................. len:24 al:2
....................................................CCUUAUAACUGUACCUGCCAAGu.................. len:23 al:14
....................................................CCUUAUAACUGUACCUGCu...................... len:19 al:5
....................................................CCUUAUAACUGUACCUGC....................... len:18 al:3
....................................................CCUUAUAgCUGUACCUGCC...................... len:19 al:1
....................................................CCUUAUAACUGUACCUGCCAAGA.................. len:23 al:11
....................................................CCUUAUAACUGUACCUGCCAu.................... len:21 al:4
....................................................CCUUAUAACUGUACCUGCCg..................... len:20 al:2
....................................................CCUUAUAACUGUACCUGCC...................... len:19 al:17
....................................................CCUUAUAACUGUACCUGCCA..................... len:20 al:20
....................................................CCUUAUAACUGUACCUGCCAAu................... len:22 al:4
....................................................CCUUAUAACUGUACCUGCCAAGc.................. len:23 al:2
....................................................CCUUAUAACUGUACCUGCCAAG................... len:22 al:24
.....................................................CUUAUAACUGUACCUGCCAAG................... len:21 al:1
.....................................................CUUAUAACUGUACCUGCCA..................... len:19 al:1
.....................................................CUUAUAACUGUACCUGCC...................... len:18 al:2
.....................................................CUUAUAACUGUACCUGCCAc.................... len:20 al:7
.....................................................CUUAUAACUGUACCUGCCAAGAc................. len:23 al:1
.....................................................CUUAUAACUGUACCUGCCAu.................... len:20 al:24
.....................................................CUUAUAACUGUACCUGCCAAGAu................. len:23 al:4
.....................................................CUUAUAACUGUACCUGCCAA.................... len:20 al:3
......................................................aUAUAACUGUACCUGCCA..................... len:18 al:2
......................................................UUAUAACUGUACCUGCCAg.................... len:19 al:1
......................................................UUAUAACUGUACCUGCCAAuA.................. len:21 al:3
......................................................UUAUAACUGUACCUGCCAA.................... len:19 al:15
......................................................UUAUAACcGUACCUGCCAA.................... len:19 al:1
......................................................UUAUAACUGUACCUGCCAAGA.................. len:21 al:1
......................................................UUAUAACUGUACCUGCCAAu................... len:20 al:7
......................................................UUAUAACUGUACCUGCCA..................... len:18 al:20
......................................................UUAUAACUGUACCUaCCA..................... len:18 al:1
......................................................UUAUAACUGUACCUGCCu..................... len:18 al:3
......................................................UUAUAACUGcACCUGCCA..................... len:18 al:1
......................................................UUAUAACUGUACCUGCCAuG................... len:20 al:2
......................................................UUAUAACUGUACCUGCCAc.................... len:19 al:10
......................................................UUAUAACUGUACCcGCCAAG................... len:20 al:1
......................................................UUAUAACUGUACCUGCCAu.................... len:19 al:94
......................................................UUAUAACUGUACCUGCCAAa................... len:20 al:1
......................................................UUAUAACUGUACCUGCCAAG................... len:20 al:34