Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_316:88415-88506 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_4161.ps.pdf
Locus Name: Cluster_4161
UGAAGCUGCUCAAGUUACUUGCAGGAAUUUCCCGCGGGUAGUUUUUGCACUCCCCGCCAGGAAUUCUUGUAGUAACUGGAGAAAUGAUGUAC
........(((.(((((((.(((((((((((..(((((.(((......))).)))))..)))))))))))))))))).)))........... (-36.80)
UGAAGCUGCUCAAGUUACUUG....................................................................... len:21 al:1
UGAAGCUGCUCAAGUUACUU........................................................................ len:20 al:4
..................UUGCAGGAAUUUCCCGCGGGUAGU.................................................. len:24 al:1
..................UUGCAGGAAUUUCCCGCGGGUuGU.................................................. len:24 al:1
...................UGCAGGAAUUUCCCGCGGGUAGc.................................................. len:23 al:4
...................UGCAGGAAUUUCCCGCGGGUAGUU................................................. len:24 al:2
...................UGCAGGAAUUUCCCGCGGGUAG................................................... len:22 al:1
...................UGCAGGAAUUUCCCGCGGGUAGUa................................................. len:24 al:1
...................UGCAGGAAUUUCCCGCGGGUAGU.................................................. len:23 al:21
....................aCAGGAAUUUCCCGCGGGUAGU.................................................. len:22 al:3
....................GCAGGAAUUUCaCGCGGGUAGU.................................................. len:22 al:1
....................GCAGGAAUUUCCCGCGGGUAGUUU................................................ len:24 al:24
....................GCAGGAAUUUCCCGCGGGUAGUaUUU.............................................. len:26 al:1
....................GCAGGAAUUUCCCGCGGGUAGUUUU............................................... len:25 al:3
....................GCAGGAAUUUCCgGCGGGUAGU.................................................. len:22 al:1
....................GCAGGAAUUUCCCGCGGGUA.................................................... len:20 al:1
....................aCAGGAAUUUCCCGCGGGUAGUU................................................. len:23 al:2
....................GCAGGAAUUUCCCaCGGGUAGU.................................................. len:22 al:1
....................GCAGGAAUUUCCCGCuGGUAGU.................................................. len:22 al:1
....................GCAGGgAUUUCCCGCGGGUAGU.................................................. len:22 al:1
....................GCAGGAAUUUCCCGaGGGUAGU.................................................. len:22 al:1
....................GCAGGAAUUUCCCGCaGGUAG................................................... len:21 al:1
....................GCAGGAAUUUCCCGCGGGUAGUUa................................................ len:24 al:2
....................GCAGGAAUUUCCCGCGGGUAGUUc................................................ len:24 al:1
....................GCAGGcAUUUCCCGCGGGUAGU.................................................. len:22 al:1
....................GCAGGAAUUUCCCGCGGGUAa................................................... len:21 al:3
....................GCAGGAgUUUCCCGCGGGUAGU.................................................. len:22 al:3
....................GCAGGAAUUUCuCGCGGGUAGU.................................................. len:22 al:1
....................GCAGGAAUUUCCCGCGGGUAGUU................................................. len:23 al:76
....................GCAGGAAUUUCCCGCGGGUAGUaUU............................................... len:25 al:5
....................GCAGGAAUUUCCCGCGGGUAGUg................................................. len:23 al:2
....................GCAGGAAUUUCCCGCGGGUAGUc................................................. len:23 al:10
....................GCAGGAAUUUCCCGCcGGUAGU.................................................. len:22 al:1
....................GCAGGAAUUUCCCGCGGGUAGc.................................................. len:22 al:35
....................GCAGGAAUUUCCCGCGGGUAG................................................... len:21 al:22
....................GCgGGAAUUUCCCGCGGGUAGU.................................................. len:22 al:2
....................GCAGGAAUUUCCCGCGGGcA.................................................... len:20 al:1
....................GCAGGAAUUUCCCGCGGGUAGg.................................................. len:22 al:5
....................GCAGGAAUUUCCCGCGGGUAGUUUUUu............................................. len:27 al:1
....................GCAGGAAUUcCCCGCGGGUAGU.................................................. len:22 al:2
....................GCAGGAAUUUCCCGCGGGUAGUaU................................................ len:24 al:2
....................GCAGGAAUUUCCCGCGGGUuGU.................................................. len:22 al:3
....................GCAGGAAUUUCCCGCGGGUAGU.................................................. len:22 al:423
....................GCAGGAAUUUCCCGCGGGUAGUa................................................. len:23 al:53
....................GCAGGAAUUUCCCGCGGGU..................................................... len:19 al:5
....................GCAGGAAUUUCCCGCGGGUAGa.................................................. len:22 al:4
....................GCAGGAAUUUCCCGCGaGUAGU.................................................. len:22 al:1
.....................CAGGAAUcUCCCGCGGGUAGU.................................................. len:21 al:7
.....................CAGGgAUUUCCCGCGGGUAGU.................................................. len:21 al:1
.....................CAGGAAUUUCCCGCGGGUA.................................................... len:19 al:2
.....................CAGGAAUUUCCCGCGGGUAGUU................................................. len:22 al:5
.....................CAGGAAUUUCCCGCGGGUAGUa................................................. len:22 al:6
.....................CgGGAAUUUCCCGCGGGUAGU.................................................. len:21 al:1
.....................CAGGAAUUUCCCGCGGGUAGUaUU............................................... len:24 al:2
.....................CAGGAAUUUCCCGCGGGUAGg.................................................. len:21 al:1
.....................CAGGAAUUUCCCGCGGGUAGUaUUU.............................................. len:25 al:3
.....................CAGGAAUUUCCCGCGGGUAGU.................................................. len:21 al:120
.....................CAGGAAUUUCCCGCGGGUAGc.................................................. len:21 al:15
.....................CAGGAAUUUCCCGCGGGUAGa.................................................. len:21 al:1
.....................CAGGAAcUUCCCGCGGGUAGUU................................................. len:22 al:2
.....................uAGGAAUUUCCCGCGGGUAGU.................................................. len:21 al:1
.....................CAGGAAUUUCCCGCGGGU..................................................... len:18 al:1
.....................CAGGAAUUUCCCGCGGGUAG................................................... len:20 al:3
.....................CAGGAAUUUCCCGCGGGUAGUg................................................. len:22 al:1
......................AGGAAUUUCCCGCGGGUAGUa................................................. len:21 al:3
......................AGGAAUUUCCCGCGGGUAGU.................................................. len:20 al:1
..........................AUUUCCCGCGGGUAGUUUUUGCACU......................................... len:25 al:1
..............................CCCGCGGGUAGUUUUUGCACU......................................... len:21 al:1
........................................GUUUUUGCACUCCCCGCCAGGgAUUCUUGUA..................... len:31 al:1
........................................GUUUUUGCACUCCCCGCCAGGAAUUCUUGUA..................... len:31 al:20
.........................................UUUUUGCACUCCCCGCCAGGAAUUCUUGUA..................... len:30 al:3
..........................................UUUUGCACUCCCCGCCAGGAAUUCUUGUA..................... len:29 al:9
..........................................UUUUGCACUCCCCGCCAGGAAUUCUUGUAuU................... len:31 al:63
..........................................UUUUGCACUCCCCGCCAGGAAUUCUUGUAaU................... len:31 al:1
..........................................UUUUGCACUCCCCGCCAGGAAUUCUUGUAu.................... len:30 al:8
..........................................UUUUGCACUCCCCGCCAGGAAUUCUUGUAGU................... len:31 al:1
..........................................UUUUGCACUCCCCGCCAGGAAUUCUUGUAcU................... len:31 al:1
..........................................UUUUGCACUCCCCGCCAGGAAUUCUUGU...................... len:28 al:2
...........................................UUUGCACUCCCCGCCAGGAAUUCUU........................ len:25 al:1
.................................................CUCCCCGCCAGGAAUUCUUGUAu.................... len:23 al:1
..................................................UCCCCGCCAGGAAUUCUUGUAuUA.................. len:24 al:25
..................................................UCCCCGCCAGGAAUUCcUGUA..................... len:21 al:1
..................................................UCCCCGCCAGGgAUUCUUGU...................... len:20 al:1
..................................................UCCCCGCCAGGAAUUCUUa....................... len:19 al:5
..................................................UCCCCGCCAGGAAUUCUUGUAaU................... len:23 al:47
..................................................UCCCCGCCAGGAAUUCUUGU...................... len:20 al:436
..................................................UCCCuGCCAGGAAUUCUUGU...................... len:20 al:1
..................................................UCCCCGCCAGGAAUUCcUGU...................... len:20 al:1
..................................................UCCCCGCCAGGAAUUCUUGUu..................... len:21 al:50
..................................................UCCCCGCCAGGAAUUCUUGUAGa................... len:23 al:3
..................................................cCCCCGCCAGGAAUUCU......................... len:17 al:1
..................................................UCCCCGCCAGGAAUUCUUGUAc.................... len:22 al:102
..................................................UCCCCGCCAGGAgUUCUUGU...................... len:20 al:1
..................................................UCCCCGCCAGGAAUUCUUGUA..................... len:21 al:252
..................................................UCCCCGCCAGGAAUUCUUGUAcU................... len:23 al:621
..................................................UCCCCGCCAGGAgUUCUUGUAGU................... len:23 al:1
..................................................UCCCCGCCAGGAAUUCUU........................ len:18 al:42
..................................................UCCCCGCCAGGAAUUCUUGUAG.................... len:22 al:2
..................................................UCCCCGCuAGGAAUUCUUGU...................... len:20 al:1
..................................................UCCCCGCCAGGAAUUCUUGUAGc................... len:23 al:8
..................................................UCCCCGCCAGGAAcUCUU........................ len:18 al:1
..................................................UCCCCGCCAGGAAUUCUUGc...................... len:20 al:46
..................................................UCCCCGCCAGGAAUUCUUGUAGU................... len:23 al:149
..................................................UCCCCGCCAGGAAUUCUUGUAGUA.................. len:24 al:1
..................................................UCCCCGCCAGGAAUUCUUGUc..................... len:21 al:3
..................................................UCCCCGCCAGGAAUUCUUGUAuU................... len:23 al:4675
..................................................UCCCCGCCAGGAAUUCUUGgA..................... len:21 al:3
..................................................UCCCCGCCAGGAAUUCUUGUAa.................... len:22 al:12
..................................................UCCCCGCCAGGAAUUCUUG....................... len:19 al:109
..................................................UCCCCGCCAGGAAUUCU......................... len:17 al:5
..................................................UCCCCGCCAGGAAUUCUUGa...................... len:20 al:4
..................................................UCCCCGCCAGGAAUaCUUGU...................... len:20 al:2
..................................................UCCCCGCCAGGAAUUCUUGg...................... len:20 al:2
..................................................UCCCCaCCAGGAAUUCUU........................ len:18 al:1
..................................................UCCCCGCCAGGAAUUCUUGUAu.................... len:22 al:954
..................................................UCCCCGCCgGGAAUUCUUGUA..................... len:21 al:1
..................................................UCCCCGCCAGGAAUUCUcG....................... len:19 al:1
..................................................UCCCCGCCAGGAAUUCUc........................ len:18 al:1
...................................................CCCCGCCAGGAAUUCUUG....................... len:18 al:2
...................................................CCCCGCCAGGAAUUCUUGUAcU................... len:22 al:3
...................................................CCCCGCCAGGAAUUCUUGUA..................... len:20 al:1
...................................................CCCCGCCAGGAAUUCUUGUAuU................... len:22 al:27
...................................................uCCCGCCAGGAAUUCUUGU...................... len:19 al:1
...................................................CCCCGCCAGGAAUUCUUGU...................... len:19 al:5
...................................................CCCCGCCAGGAAUUCUUGUAu.................... len:21 al:4
....................................................CCCGCCAGGAAUUCUUGUAGU................... len:21 al:1
....................................................CCCGCCAGGAAUUCUUGUAuU................... len:21 al:9
....................................................CCCGCCAGGAAUUCUUGUAu.................... len:20 al:2
........................................................CCAGGAAUUCUUGUA..................... len:15 al:1
.......................................................................GUAACUGGAGAAAUGAUGU.. len:19 al:1