Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_222:136401-136493 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_3380.ps.pdf
Locus Name: Cluster_3380
UUCAAAAUGUUAAAACUUGGCAGGUCUAUACAGUUUUGGACUUAUAAUGAGUCCAAAACUGCAUAGACGUGCCAAGCUUUCAGGAAAGCGCUG
................((((((.((((((.((((((((((((((...)))))))))))))).)))))).))))))(((((....))))).... (-42.50)
............AAACUUGGCAGGUCUAUACAGUUUUGGACU................................................... len:30 al:1
................UUGGCAGGUCUAUACAGUUU......................................................... len:20 al:1
...................GCAGGUCUAUACAGUUUUGGg..................................................... len:21 al:1
...................GCAGGUCUAUACAGUUUUGGAuU................................................... len:23 al:2
...................GCAGGUCUAUACAGUUUc........................................................ len:18 al:1
....................CAGGUCUAUACAGUUUUGGAaU................................................... len:22 al:2
....................CAGGUCUAUACAGUUUUG....................................................... len:18 al:1
....................CAGGUCUAUACAGUUUUGG...................................................... len:19 al:2
....................CAGGUCUAUACAGUUUUGGAu.................................................... len:21 al:2
....................CAGGUCUAUACAGUUUUGGA..................................................... len:20 al:8
....................CAGGUCUAUACAGUUUUGc...................................................... len:19 al:1
.....................AGGcCUAUACAGUUUUGGA..................................................... len:19 al:1
.....................AGGUCUAUACAGUUUUGa...................................................... len:18 al:4
.....................AaGUCUAUACAGUUUUGGA..................................................... len:19 al:1
.....................AGGUCUAUACAGUUUUGGg..................................................... len:19 al:1
.....................AGGUCUAUACAGUUUUGGA..................................................... len:19 al:142
.....................AGGUCUAUACAGUUUUGGAu.................................................... len:20 al:3
.....................cGGUCUAUACAGUUUUGGA..................................................... len:19 al:1
.....................AGGUCUAUACAGUUUUGG...................................................... len:18 al:2
.....................AGGUCUAUgCAGUUUUGGA..................................................... len:19 al:1
.....................AGGUCUAUACAGUUUUGGu..................................................... len:19 al:12
.....................AGGUCUAUACAGUcUUGGA..................................................... len:19 al:2
.........................CUAUACAGUUUUGGACUU.................................................. len:18 al:1
..........................................UAUAAUGAGUCCAAAACUGCAUAGACGUGC..................... len:30 al:2
..........................................UAUAAUGAGUCCAAAACUGCAUAGACGUGCC.................... len:31 al:5
...........................................AUAAUGAGUCCAAAACUGCAUAGACGUGCu.................... len:30 al:4
...........................................AUAAUGAGUCCAAAACUGCAUAGACGUG...................... len:28 al:1
...........................................AUAAUGAGUCCAAAACUGCAUAGACGUGCa.................... len:30 al:1
...........................................AUAAUGAGUCCAAAACUGCAUAGACGUGu..................... len:29 al:2
...............................................UGAGUCCAAAACUGCAUAGACGUGC..................... len:25 al:1
.................................................AGUCCAAAACUGCAUAGACGUG...................... len:22 al:4
..................................................GUCCAAAACUGCAUAGACGUGu..................... len:22 al:15
..................................................aUCCAAAACUGCAUAGACGUGC..................... len:22 al:1
..................................................GUCCAAAACUGCAUAGACGUGa..................... len:22 al:2
..................................................GUCCAAAACUGCAUAGACGU....................... len:20 al:1
..................................................GUCCAAAACUGCAUAGACGUGCCAu.................. len:25 al:1
..................................................GUCCAAAgCUGCAUAGACGUG...................... len:21 al:1
..................................................GUCCAAAACUGCAUAGACGUGC..................... len:22 al:26
..................................................GUCCAAAACUGCAUAGACGUa...................... len:21 al:2
..................................................GUCCAAAACUGCAUAGACGUG...................... len:21 al:6
..................................................GUCCAAAACUGCAUAGACGUGg..................... len:22 al:2
..................................................GUCCAAAACUGCAUAGACGUGCu.................... len:23 al:1
..................................................GUCCAAAcCUGCAUAGACGUGC..................... len:22 al:1
..................................................GUCCAAAACUGCAUAGACGUGCC.................... len:23 al:6
..................................................GUCCAAAACUGCAUAGACGUGCCA................... len:24 al:1
...................................................UCCAAAACUaCAUAGACGU....................... len:19 al:5
...................................................UCCAAAACUGCAUAGuCGUGC..................... len:21 al:1
...................................................UCCAAAgCUGCAUAGACGU....................... len:19 al:9
...................................................UCaAAAACUGCAUAGACGU....................... len:19 al:1
...................................................UCCcAAACUGCAUAGACGU....................... len:19 al:1
...................................................UCCAAAACUGCAUAGgCGUG...................... len:20 al:7
...................................................UCCAAAACUGCAUAGACuU....................... len:19 al:1
...................................................UCCAAAACUGCcUAGACGU....................... len:19 al:1
...................................................UCCAAAACUGCAUAGACGUGCCu................... len:23 al:365
...................................................UCCAAAACUGCgUAGACGUG...................... len:20 al:3
...................................................UCCAAAACUGCAUgGACGU....................... len:19 al:20
...................................................UCCAAAACUGCAUAGACaUG...................... len:20 al:1
...................................................UCCAAAACUGCAUAuACGU....................... len:19 al:1
...................................................UCCAAAACUGCAUAGACGUGa..................... len:21 al:38
...................................................UCCAAAACUGCAUAGACGUGCCAAu................. len:25 al:1
...................................................UCCAAgACUGCAUAGACGUG...................... len:20 al:1
...................................................UCCAAAACUGCAUAGACGUGCa.................... len:22 al:94
...................................................UCCAAAcCUGCAUAGACGUGCC.................... len:22 al:1
...................................................UCCAAAACcGCAUAGACGUGC..................... len:21 al:3
...................................................UCCAAAACUGCAUAGACaU....................... len:19 al:12
...................................................UCCAAAACUGCAUAGACGUGCCAAa................. len:25 al:3
...................................................UCCAAAACUGCuUAGACGU....................... len:19 al:3
...................................................UCCAAgACUGCAUAGACGU....................... len:19 al:14
...................................................UCuAAAACUGCAUAGACGU....................... len:19 al:2
...................................................UCCAcAACUGCAUAGACGUG...................... len:20 al:1
...................................................UCCAAcACUGCAUAGACGU....................... len:19 al:1
...................................................cCCAAAACUGCAUAGACGUGCCA................... len:23 al:1
...................................................UCCAAAACUGCAUAGACGcGC..................... len:21 al:8
...................................................UCCAAAACUGCAUAGAuGUGCC.................... len:22 al:2
...................................................UCCAAAACUGCAUAGAuGU....................... len:19 al:6
...................................................UCCAAAACUGCAUAGACaUGCC.................... len:22 al:1
...................................................UCCAAAACcGCAUAGACGU....................... len:19 al:28
...................................................UCCAAAgCUGCAUAGACGUGC..................... len:21 al:1
...................................................UCCAAAACUGuAUAGACGUGCCA................... len:23 al:1
...................................................UCCAAAACUGCAcAGACGUGCC.................... len:22 al:2
...................................................UCCAAAACUGCAUAGACGg....................... len:19 al:39
...................................................UCCgAAACUGCAUAGACGU....................... len:19 al:11
...................................................UCCAAAACUGCAUgGACGUGCC.................... len:22 al:3
...................................................UaCAAAACUGCAUAGACGU....................... len:19 al:8
...................................................UCCAAAACUGCAUAGACGUGCCA................... len:23 al:198
...................................................cCCAAAACUGCAUAGACGU....................... len:19 al:34
...................................................UCCAAAACUGCAUAGACGU....................... len:19 al:6570
...................................................UCCAAAACUGCAUAGACGUGCCAg.................. len:24 al:1
...................................................UCCAAAgCUGCAUAGACGUGCCA................... len:23 al:1
...................................................UCCAAAACUGCAcAGACGU....................... len:19 al:10
...................................................UCCAAAACUGCcUAGACGUGCC.................... len:22 al:1
...................................................UCCAgAACUGCAUAGACGUG...................... len:20 al:2
...................................................UCCAAAACUGCAUAGACGUaCCA................... len:23 al:2
...................................................UCCAAAACUGCAcAGACGUGC..................... len:21 al:1
...................................................UCCAAAACUGCAUAGACGUGCaA................... len:23 al:1
...................................................UCCAAAACUGCAUAGACGUa...................... len:20 al:88
...................................................cCCAAAACUGCAUAGACGUGCC.................... len:22 al:6
...................................................UCCAAAACUGCAUAGACG........................ len:18 al:176
...................................................UCCAgAACUGCAUAGACGUGC..................... len:21 al:2
...................................................UCCAAAACUGCAUAGACGUu...................... len:20 al:30
...................................................UCCAAAACUGCAUAGACGUGCCc................... len:23 al:66
...................................................UCCAAAACUGCAUAGAgG........................ len:18 al:1
...................................................UCCAAAACUGCAUAGACGUc...................... len:20 al:4
...................................................UCCAAgACUGCAUAGACG........................ len:18 al:2
...................................................UCCAAAACUGCgUAGACGU....................... len:19 al:28
...................................................UCCAAAACUGCAUcGACGU....................... len:19 al:1
...................................................UCCAAAACUGCAUAGACGcG...................... len:20 al:2
...................................................UCCAAAACUGCAUAGACGUGu..................... len:21 al:529
...................................................UCCAgAACUGCAUAGACGUGCC.................... len:22 al:2
...................................................UCCAAAACUGCAcAGACG........................ len:18 al:1
...................................................UCCAAAACUGCgUAGACGUGC..................... len:21 al:2
...................................................UCCAAAgCUGCAUAGACGUGCC.................... len:22 al:4
...................................................UCCAAAACUGCAUAGgCG........................ len:18 al:1
...................................................UCCAAAACUGCAUAGgCGUGC..................... len:21 al:5
...................................................UCCAAAACUGCAUAGACGUGCg.................... len:22 al:8
...................................................UCCAAAACUGCAUAGAgGU....................... len:19 al:2
...................................................aCCAAAACUGCAUAGACGUGC..................... len:21 al:2
...................................................UCCAAAAuUGCAUAGACGU....................... len:19 al:2
...................................................UCCAAAACUGCAUAGACu........................ len:18 al:1
...................................................UCCAAAACUGCAUAGACGUGaC.................... len:22 al:3
...................................................UCCAAAACUGCAUAGACGUGCC.................... len:22 al:1181
...................................................UCCAAAACUGCAUAGACGUGCCAc.................. len:24 al:7
...................................................UCCAAAACUGCAUAGACGUGC..................... len:21 al:729
...................................................UCCAAcACUGCAUAGACGUGC..................... len:21 al:1
...................................................UCCAAuACUGCAUAGACGU....................... len:19 al:3
...................................................UCCAAAACUGCAUAGgCGUGCC.................... len:22 al:4
...................................................UCCgAAACUGCAUAGACGUG...................... len:20 al:2
...................................................UCCAAAACUGuAUAGACGUGC..................... len:21 al:1
...................................................UCCAAAcCUGCAUAGACGU....................... len:19 al:7
...................................................UCCAAAACgGCAUAGACGU....................... len:19 al:1
...................................................UCCAAAACUGCAUAGACGUGCCAAaC................ len:26 al:2
...................................................UuCAAAACUGCAUAGACGUGC..................... len:21 al:2
...................................................cCCAAAACUGCAUAGACGUGC..................... len:21 al:3
...................................................UCCAAgACUGCAUAGACGUGCC.................... len:22 al:2
...................................................UCCAAcACUGCAUAGACGUGCC.................... len:22 al:1
...................................................UCCAgAACUGCAUAGACG........................ len:18 al:1
...................................................UCCAAAACUGCAUAGACGa....................... len:19 al:76
...................................................UCCAgAACUGCAUAGACGU....................... len:19 al:23
...................................................UCCAAAACUGCAUAGACGUaCC.................... len:22 al:2
...................................................UCCAAAACUGCAUAGACGgG...................... len:20 al:2
...................................................cCCAAAACUGCAUAGACGUG...................... len:20 al:2
...................................................UCCAAAACaGCAUAGACGUGCC.................... len:22 al:2
...................................................UCCAAAACUGCAUAGgCGUGCCA................... len:23 al:1
...................................................UCCAAAACUGCAUAGuCGU....................... len:19 al:1
...................................................UCCAAAcCUGCAUAGACGUG...................... len:20 al:1
...................................................UCCAAAACUGCAUuGACGUGC..................... len:21 al:3
...................................................UCCAAAACUGCAUAGAuG........................ len:18 al:2
...................................................UCCAAAACaGCAUAGACGU....................... len:19 al:3
...................................................UCCAAAACUGCAUAGACGUGCCAuG................. len:25 al:3
...................................................UCCAAAACUGCAUAuACGUGC..................... len:21 al:1
...................................................UCCAAAACUGCAUAGACGUGCCg................... len:23 al:22
...................................................UCCAAAACUGCAUAGACGUGCCAAc................. len:25 al:1
...................................................UCCAAAACUGCAUAGACGUGCCuA.................. len:24 al:1
...................................................UCCAAAACcGCAUAGACG........................ len:18 al:2
...................................................UCCgAAACUGCAUAGACGUGCC.................... len:22 al:2
...................................................UCCAAAACUGCAUAGACGUGCCAu.................. len:24 al:123
...................................................UCCAAAACUGCAUAGACGc....................... len:19 al:748
...................................................UCCAAAACUGCAUAGAaGU....................... len:19 al:5
...................................................UCCAAAACUGCAUAGACGcGCC.................... len:22 al:3
...................................................UCCAAAACUGCAUgGACGUGC..................... len:21 al:2
...................................................UCCAAAACUGCAUAGACGUGCCAA.................. len:24 al:6
...................................................UCgAAAACUGCAUAGACGU....................... len:19 al:1
...................................................UCCAAAACUGCAUAGACGUGCu.................... len:22 al:904
...................................................UuCAAAACUGCAUAGACGU....................... len:19 al:6
...................................................UCCAAAACUGCgUAGACGUGCC.................... len:22 al:3
...................................................UCCAAAACUGCAUAGACGUG...................... len:20 al:466
...................................................UCCAAAACUGuAUAGACGU....................... len:19 al:5
...................................................UCCAAAACUGCAUAGACGaGC..................... len:21 al:1
...................................................UCCAAAACUGCAUAGACa........................ len:18 al:36
...................................................aCCAAAACUGCAUAGACGU....................... len:19 al:9
...................................................UCCAuAACUGCAUAGACGU....................... len:19 al:1
...................................................UCCAAAACUGCAUAGACGUaC..................... len:21 al:5
...................................................UCCAAAACUGCAUAaACGU....................... len:19 al:4
...................................................UCCuAAACUGCAUAGACGU....................... len:19 al:2
...................................................aCCAAAACUGCAUAGACG........................ len:18 al:1
...................................................UCCAAAACUGCAcAGACGUG...................... len:20 al:2
...................................................UCCAAAACUGCAUAGACGUuC..................... len:21 al:1
...................................................UCCAAAACUGCAUAGgCGU....................... len:19 al:31
...................................................UCCAAAACcGCAUAGACGUGCC.................... len:22 al:3
...................................................UCCAAAACUGCAaAGACGU....................... len:19 al:2
...................................................UCCAAgACUGCAUAGACGUGC..................... len:21 al:10
...................................................UCCAcAACUGCAUAGACGU....................... len:19 al:2
...................................................UCCAAAACUGCAUAGACGUGuC.................... len:22 al:3
...................................................gCCAAAACUGCAUAGACGUGCCA................... len:23 al:1
...................................................UCCAAAACUGCAUuGACGUGCC.................... len:22 al:1
...................................................UCCAAAACUGCAUuGACGU....................... len:19 al:2
...................................................aCCAAAACUGCAUAGACGUGCC.................... len:22 al:1
....................................................CCAAAACUGCAUAGACGUGCCAAGC................ len:25 al:2
....................................................aCAAAACUGCAUAGACGU....................... len:18 al:1
....................................................CCAAAACUGCAUAGACGUGCCAu.................. len:23 al:8
....................................................CCAAAACUGCAUAGACGUGu..................... len:20 al:3
....................................................CCAAAACUGCAUAGACGUGC..................... len:20 al:2
....................................................CCAAAACUGCAUAGACuU....................... len:18 al:1
....................................................CCAAAACUGCAUAGACGUGCu.................... len:21 al:3
....................................................CCAAAACUGCAUAGACGUGCC.................... len:21 al:3
....................................................CCAAAACUGCAUAGACGa....................... len:18 al:1
....................................................CCAAAACUGCAUAGACGc....................... len:18 al:9
....................................................CCAAAACUGCAUAGcCGU....................... len:18 al:1
....................................................CCAAAACUGCAUAGACGUGCCA................... len:22 al:1
....................................................CCAAAgCUGCAUAGACGU....................... len:18 al:3
....................................................CCAAAACUGCAUAGACGU....................... len:18 al:100
....................................................CCcAAACUGCAUAGACGU....................... len:18 al:1
.....................................................CAAAACUGCAUAGACGUGu..................... len:19 al:2
.....................................................CAAAACUGCAUAGACGUGC..................... len:19 al:1
.....................................................CAAAACUGCAUAGACGUGCCA................... len:21 al:4
.....................................................CAAAACUGCAUAGACGUGCCu................... len:21 al:2
.....................................................CAAAACUGCAUAGACGUGCCAu.................. len:22 al:1
.....................................................CAAAACUGCAUAGACGU....................... len:17 al:3
......................................................AAAACUGCAUAGACGUG...................... len:17 al:1
......................................................AAAACUGuAUAGACGUGC..................... len:18 al:1
......................................................AAAACUGCAUAGACGUGu..................... len:18 al:1
......................................................AAAACUGCAUAGACGU....................... len:16 al:3
......................................................AAAACUGCAUAGACGUGCCg................... len:20 al:1
......................................................AAAACUGCAUAGACGUGC..................... len:18 al:3
......................................................AAAACUGCAUAGACGUGCCAu.................. len:21 al:6
......................................................AAAACUGCAUAGACGUGCC.................... len:19 al:3
.......................................................AAACUGCAUAGACGUGCC.................... len:18 al:3
.......................................................AAACUGCAUAGACGUGCu.................... len:18 al:1
.......................................................AAACUGCAUAGACGU....................... len:15 al:2
........................................................AACUGCAUAGACGUGCCAAGC................ len:21 al:1
................................................................AGACGUGCCAAGCUUUCAGGAAAGCG... len:26 al:2