Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_197:358202-358297 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_3165.ps.pdf
Locus Name: Cluster_3165
CUAUGUAGCCUCUCACGCAGACGUUCUUACGGGUUCGUCACGCGUUCCUGCGUGAAGAACCCCGAAGAACGUCUACGUGAGAGGCUAUUCACUAUC
....(((((((((((((.((((((((((..((((((.((((((......)))))).))))))..)))))))))).)))))))))))))........ (-61.20)
CUAUGUAGCCUCUCACGCAG............................................................................ len:20 al:1
CUAUGUAGCCUCUCACGCAa............................................................................ len:20 al:1
.UAUGUAGCCUCUCACGCAG............................................................................ len:19 al:3
..AUGUAGCCUCUCACGCAG............................................................................ len:18 al:2
....................ACGUUCUUACGGGUUCGUCACGCu.................................................... len:24 al:4
....................ACGUUCUUACGGGUUCGUCACGCGUU.................................................. len:26 al:4
....................ACGUUCUUACGGGUUCGUCACG...................................................... len:22 al:1
....................ACGUUCUUACGGGUUCGUCAC....................................................... len:21 al:1
....................ACGUUCUUACGGGUUCcUCACGCG.................................................... len:24 al:1
..........................UUACGGGUUCGUCACGCGUUCCUGCGUGA......................................... len:29 al:1
...................................................GUGAgGAACCCCGAAGAACGUCU...................... len:23 al:3
...................................................GUGAAGAACCCCGAAGAACGUuU...................... len:23 al:39
...................................................GUGAAGAACCCCGAAGAACGUaU...................... len:23 al:6
...................................................aUGAAGAACCCCGAAGAACGUCU...................... len:23 al:3
...................................................GUGAAGAACCCCGAgGAA........................... len:18 al:1
...................................................GUGAAGAACCCCGAAGAACGUu....................... len:22 al:3
...................................................GUGAAGAACCCCGAAGAACGU........................ len:21 al:3
...................................................GUGAAGAACCCCGAAGAACGUCUA..................... len:24 al:1
...................................................GUGAAGAACCCCGAAGAACGc........................ len:21 al:1
...................................................GUGAAGAACCCCGAAGAACa......................... len:20 al:1
...................................................GUGAAGAACCCCGAAGAACGUCc...................... len:23 al:28
...................................................GUGAAGAACCCCGAAGAACGUCa...................... len:23 al:1
...................................................GUGAAGAACCCCGAAGAACGUCU...................... len:23 al:128
...................................................GUGAAGAACCCCGAAGAACGUC....................... len:22 al:14
...................................................GUGAAGAACCCCGAAGAACGUCUu..................... len:24 al:1
...................................................GUGAAGAACCCCGAAGAACG......................... len:20 al:1
...................................................GUGAAGAACCCCGAA.............................. len:15 al:2
...................................................GUGAAGAACCCCGAgGAACGUCU...................... len:23 al:3
...................................................GUGAAGAACCCCGgAGAACGUCU...................... len:23 al:1
....................................................UGAAGAACgCCGAAGAACGUCU...................... len:22 al:2
....................................................UGAAGAACCCCGAAGAAu.......................... len:18 al:2
....................................................UGAgGAACCCCGAAGAACGUC....................... len:21 al:1
....................................................UaAAGAACCCCGAAGAACGUCU...................... len:22 al:2
....................................................UGAAGAACuCCGAAGAACGUCU...................... len:22 al:2
....................................................UGAAGAACCCaGAAGAACGUCU...................... len:22 al:1
....................................................gGAAGAACCCCGAAGAACGUCUAC.................... len:24 al:2
....................................................UGAAGAACCCCGAuGAACGUC....................... len:21 al:1
....................................................UGAAGAACCCCGAAGAACGUCUg..................... len:23 al:2
....................................................UGAAGAACCuCGAAGAACGUC....................... len:21 al:1
....................................................UGAAGAACCCCGAAGAACGcCUA..................... len:23 al:1
....................................................UGAAGAACCCCGgAGAACGUCU...................... len:22 al:5
....................................................UGAAGAACCuCGAAGAACGUCU...................... len:22 al:4
....................................................UGAAGAACCCCGAAGAACGg........................ len:20 al:1
....................................................UGAAGAACCCCGAAGAACGcCU...................... len:22 al:12
....................................................UGAAGAACCCCGAgGAACGU........................ len:20 al:1
....................................................UGAAGAACCCCGAAGAgCGUCUA..................... len:23 al:1
....................................................UGAAGAACCCCGAAcAACGUCU...................... len:22 al:1
....................................................UGAAGAACCCCGAAGAACGUaU...................... len:22 al:16
....................................................UGAAGAACCCCGAAGAACGUCcA..................... len:23 al:2
....................................................UGAAGAACCCCGAAGAACGUCUAu.................... len:24 al:139
....................................................UGAAGAACCCCGAAGAACGc........................ len:20 al:33
....................................................cGAAGAACCCCGAAGAACGU........................ len:20 al:2
....................................................UGAAuAACCCCGAAGAACGUCU...................... len:22 al:3
....................................................UGuAGAACCCCGAAGAACGUCU...................... len:22 al:4
....................................................UGAAGAACCCCGAAGAAC.......................... len:18 al:48
....................................................UGAAGAACCCCGAAGgACGUCUA..................... len:23 al:1
....................................................cGAAGAACCCCGAAGAACGUCU...................... len:22 al:15
....................................................UGAAGAACCCCGAAGAACGUCUAC.................... len:24 al:16
....................................................UGAAGAACCCCGAAGAACGUCUA..................... len:23 al:90
....................................................UGAAGAACCCCGAAGAgCGUC....................... len:21 al:2
....................................................aGAAGAACCCCGAAGAACGUCU...................... len:22 al:5
....................................................UGAAGAACCCCGAAGAACGUCa...................... len:22 al:77
....................................................UGAAGAACCCCGAAGAACGUu....................... len:21 al:15
....................................................UGAAGAACCCCGAAGAACGUCUuC.................... len:24 al:6
....................................................UGAAGAACuCCGAAGAACGU........................ len:20 al:3
....................................................UGAAGAACCCCGAAGAgCGUCU...................... len:22 al:11
....................................................UGAAGAACCCCGAAGAACGUCUACu................... len:25 al:2
....................................................UGAAGAACCCCGAAGAAuGUCU...................... len:22 al:3
....................................................UGAAGAACCgCGAAGAACGUCU...................... len:22 al:1
....................................................UGAAGAACCCCGAAuAACGUCU...................... len:22 al:1
....................................................UGAAGAACCCCGAAGAgCGUCUAC.................... len:24 al:1
....................................................UGAuGAACCCCGAAGAACGUCU...................... len:22 al:1
....................................................UGgAGAACCCCGAAGAACGUC....................... len:21 al:1
....................................................UGAAGgACCCCGAAGAACGUCU...................... len:22 al:6
....................................................UGAAGAACCCCaAAGAACGUCU...................... len:22 al:1
....................................................UGAAGAACCuCGAAGAACGU........................ len:20 al:1
....................................................UGgAGAACCCCGAAGAACGUCU...................... len:22 al:10
....................................................UGAAGAACCCCGAAGAACGUCc...................... len:22 al:307
....................................................UGAgGAACCCCGAAGAACGUCU...................... len:22 al:12
....................................................UGAAGAACCCCGAAGAACGUCUc..................... len:23 al:8
....................................................cGAAGAACCCCGAAGAAC.......................... len:18 al:1
....................................................UGAAGAACCCCGAAGAACGUCUAg.................... len:24 al:2
....................................................UGAAGAACCCCGAAGAACa......................... len:19 al:5
....................................................UGAAGAACCCCGAAGAACGUCaA..................... len:23 al:3
....................................................UGAAGAACCCCGAAGAACGUC....................... len:21 al:150
....................................................UGAAGAACCCCGAAGAACGa........................ len:20 al:3
....................................................UGAAGAACCCCGAAGuACGUCU...................... len:22 al:1
....................................................UGAAGAACCCCGAAGAACGUgU...................... len:22 al:10
....................................................UGAAGAACCCCGAAGAACGUCUAa.................... len:24 al:1
....................................................aGAAGAACCCCGAAGAACGUC....................... len:21 al:1
....................................................UGAAGAACCCCGAAGAgCGU........................ len:20 al:3
....................................................UGAAGAACCCCGAAGgACGUCU...................... len:22 al:11
....................................................UGgAGAACCCCGAAGAACGU........................ len:20 al:2
....................................................UGAAGAACCCCGAAGgACGUCUAC.................... len:24 al:1
....................................................UGAAGAcCCCCGAAGAACGUCU...................... len:22 al:2
....................................................UGAAGAACCCCGAAGAACGU........................ len:20 al:217
....................................................UGAAGAAuCCCGAAGAACGUCU...................... len:22 al:4
....................................................UGAAGAACCCCGAAGAACG......................... len:19 al:21
....................................................UcAAGAACCCCGAAGAA........................... len:17 al:1
....................................................UGAgGAACCCCGAAGAACGU........................ len:20 al:2
....................................................UGAAGAACCCCGAAGAACGUCUu..................... len:23 al:191
....................................................UGAAGAACCCCGAAGAACGUuUA..................... len:23 al:2
....................................................UGcAGAACCCCGAAGAACGUCU...................... len:22 al:2
....................................................UGAAGAACCCCGAAGAACGUCU...................... len:22 al:2319
....................................................UGAAGAACCCuGAAGAACGU........................ len:20 al:1
....................................................UGAAGuACCCCGAAGAACGUCU...................... len:22 al:1
....................................................UGAAGAACCCCGAgGAACGUCU...................... len:22 al:20
....................................................UGAuGAACCCCGAAGAACGU........................ len:20 al:1
....................................................UGAAGAACCCCGAAGAACGUuU...................... len:22 al:18
....................................................UGAAGgACCCCGAAGAACGU........................ len:20 al:1
....................................................UGAAGAACCCuGAAGAACGUCU...................... len:22 al:3
....................................................UGAAGAgCCCCGAAGAACGUCU...................... len:22 al:9
.....................................................GAAGAACCCCGAAGAACGUa....................... len:20 al:1
.....................................................GAAGAACCCCGAAGAACG......................... len:18 al:2
.....................................................GAAGAACCCCGAAGAACGUCUAa.................... len:23 al:1
.....................................................aAAGAACCCCGAAGAACGUCU...................... len:21 al:1
.....................................................GAAGAACCCCGAAGAACGUu....................... len:20 al:1
.....................................................GAAGAACCCCGAAGAACGUCUAu.................... len:23 al:7
.....................................................GAAGAACCCCGAAGAACGUCUu..................... len:22 al:5
.....................................................GAgGAACCCCGAAGAACGUC....................... len:20 al:1
.....................................................GAAGAACCCCGAAGAgCGUCU...................... len:21 al:1
.....................................................GAAGAACCCCGAAGAACGUCc...................... len:21 al:5
.....................................................GAAGAACCCCGAAGAACGUCa...................... len:21 al:1
.....................................................GAAGAACCCCGAAGAACGUCU...................... len:21 al:57
.....................................................GAAGAACCCCGAAGAACGUC....................... len:20 al:3
.....................................................GuAGAACCCCGAAGAACGUCU...................... len:21 al:1
.....................................................GAAGAACCCCGAAGAACGUCUA..................... len:22 al:12
.....................................................cAAGAACCCCGAAGAACGU........................ len:19 al:1
......................................................AAGAACCCCGAAGAACGUCUA..................... len:21 al:8
......................................................AAGAACCCCGAAGAACGUCa...................... len:20 al:4
......................................................AAGAgCCCCGAAGAACGUCU...................... len:20 al:1
......................................................AAGAACCCCGAAGAACGUC....................... len:19 al:3
......................................................AAGAACCCCGAAGAACGUCU...................... len:20 al:32
......................................................AAGAACCCCGAAGAcCGUCUA..................... len:21 al:1
......................................................AAGAACCCCGAAGAACGa........................ len:18 al:1
......................................................AAGgACCCCGAAGAACGUCU...................... len:20 al:1
......................................................AAGAACCCCGAAGAACGUCUAu.................... len:22 al:13
......................................................AAGAACCCCGAAGAACGUCc...................... len:20 al:5
......................................................AAGAACCCCGAAGAACGU........................ len:18 al:6
......................................................AAGAACCCCGAAGAACGc........................ len:18 al:3
......................................................AAGAACCCCGAAGAACGUCUAC.................... len:22 al:1
.......................................................AGAACCCCGAAGAACGUCU...................... len:19 al:2
........................................................GAACCCCGAAGAACGUCU...................... len:18 al:1