Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_144:320713-320805 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_2454.ps.pdf
Locus Name: Cluster_2454
AGAAUAUCUGCAAGACUGAACAUCCCUUUGUAUCCUGAAUUUUCGGCAAAUUCAGGAUGUAAAGGGAUUUUUAGUCUUACAGUCUUAGUCUCU
(((....(((.(((((((((.(((((((((((((((((((((.....))))))))))))))))))))).))))))))).)))......))).. (-41.40)
AGAAUAUCUGCgAGACUGAA......................................................................... len:20 al:1
AGAAUAUCUGCAAGACUGAA......................................................................... len:20 al:1
.GAAUAUCUGCAAGACUGAA......................................................................... len:19 al:18
..AAUAUCUGCAAGACUGAA......................................................................... len:18 al:2
....UAUCUGCgAGACUGAACAUCC.................................................................... len:21 al:2
...................ACAUCaCUUUGUAUCCUGAAUUU................................................... len:23 al:1
...................ACAUCCCUUUGUAUCCUGAAUU.................................................... len:22 al:13
...................ACAUCCCUUUGUAUCCUGAAUUUU.................................................. len:24 al:2
...................ACAUCCCUUUGUAUCCUGAA...................................................... len:20 al:2
...................ACAUCCCUUUGUAUCCUGAAUUU................................................... len:23 al:4
....................CAUCCCUcUGUAUCCUGAAUUU................................................... len:22 al:1
....................CAUCCCUUUGUAUCCUGAAUUUUC................................................. len:24 al:2
....................CAUCCCUUUGUAUCCUGAAUUa................................................... len:22 al:1
....................CAUCCCUUUGUAUCCUGAAUUUc.................................................. len:23 al:1
....................CAUCCCUUUGUAUCCUGAAUUU................................................... len:22 al:78
....................CAUCCCUUcGUAUCCUGAAUUUU.................................................. len:23 al:1
....................CAUCCCUUUGUAUCCUGA....................................................... len:18 al:4
....................CAUCCCUUUGUAUCCcGAAUUUU.................................................. len:23 al:2
....................CAUCCCUUUGUAUCCUGAAUUUUu................................................. len:24 al:4
....................CAcCCCUUUGUAUCCUGAAUUUU.................................................. len:23 al:2
....................CAUCCCUUUGUAUCCUGAAUc.................................................... len:21 al:4
....................CAUCCCUUUGUAUCCUGAAUU.................................................... len:21 al:24
....................CAUCCCUUUGUAUCCUGAAUUUUCGGCAA............................................ len:29 al:1
....................CAUCCuUUUGUAUCCUGAAUUU................................................... len:22 al:2
....................CAUCCCUUUGUAUCCUGAAUUUU.................................................. len:23 al:18
....................CAUCCCUUUGUAUCCUGAAU..................................................... len:20 al:1
....................CAUCCCUUUGUAUCCUGAAUUUUCGGCA............................................. len:28 al:6
....................CAUCCCUUUGUAUCCgGA....................................................... len:18 al:1
....................CAUCCuUUUGUAUCCUGAAUU.................................................... len:21 al:2
....................CAUCCCUUUGUAUCCUGAAUUUUCGGCAAu........................................... len:30 al:1
....................CAUCCCUUUGUAUCCUGAA...................................................... len:19 al:2
....................CAUCCuUUUGUAUCCUGAA...................................................... len:19 al:1
.....................AUCCCUUUGUAUCCUGAAUUU................................................... len:21 al:4
......................UCCCUUUGUAUCCUGAAUUU................................................... len:20 al:10
..........................UUUGUAUCCUGAAUUUUa................................................. len:18 al:1
..........................UUUGUAUCCUGAAUUUUC................................................. len:18 al:2
................................................AAUUCAGGAUGUAAAGGGAUUUU...................... len:23 al:5
.................................................AUUCAGGAUGUAAAGGGA.......................... len:18 al:2
.................................................AUUCgGGAUGUAAAGGGAUU........................ len:20 al:1
.................................................AUUCAGGAUGUAgAGGGAUUUUU..................... len:23 al:2
.................................................AUUCAGGAUGUAAgGGGAUUU....................... len:21 al:1
.................................................AUUCAGGAUGUAAAGGGAUUUg...................... len:22 al:1
.................................................AUUCAGGAUGUAAgGGGAUU........................ len:20 al:1
.................................................AUUCAGGAUGUAAAGGGAUU........................ len:20 al:38
.................................................AUUCAGGAUGUAAAGGGAUc........................ len:20 al:7
.................................................AUUCAGGAUGUgAAGGGAUUUU...................... len:22 al:1
.................................................AUUCgGGAUGUAAAGGGAUUUU...................... len:22 al:1
.................................................AUUCAGGAUGUAAAaGGAUUUU...................... len:22 al:1
.................................................AUUCAGGAUGUAAAGGGAUUUU...................... len:22 al:673
.................................................AUUCAGGAUGUAAAGGGAUUgU...................... len:22 al:3
.................................................AUUCAGGAUGUAuAGGGAUUUU...................... len:22 al:1
.................................................AUUCAGGuUGUAAAGGGAUUUU...................... len:22 al:1
.................................................AUUCAGGAUGUAAAGGGgUUUU...................... len:22 al:1
.................................................AUUCAGGAUGcAAAGGGAUUUU...................... len:22 al:2
.................................................AUUCAGGAUGUAAAGGGAUUUa...................... len:22 al:1
.................................................AUUCAGGAUGUAgAGGGAUUUU...................... len:22 al:6
.................................................AUUCAGGAUGUAAAGGGAUUUUc..................... len:23 al:6
.................................................AUUCAGGAUGUAAAGGGAUg........................ len:20 al:1
.................................................gUUCAGGAUGUAAAGGGAUUUU...................... len:22 al:31
.................................................AUUCcGGAUGUAAAGGGAUUUU...................... len:22 al:1
.................................................AUUCAGGAUGUAAgGGGAUUUU...................... len:22 al:4
.................................................AUUCAGGAUGUAAAGGGAUUUc...................... len:22 al:37
.................................................AUUCAGGAUGUAAAGGGAUcU....................... len:21 al:1
.................................................AUUCAGGAUGUAAAGGGAUUc....................... len:21 al:6
.................................................gUUCAGGAUGUAAAGGGAUU........................ len:20 al:1
.................................................AUUCAGGAUGUAAAGGGAcUU....................... len:21 al:1
.................................................AcUCAGGAUGUAAAGGGAUUUU...................... len:22 al:2
.................................................AUUCAGGAUGUuAAGGGAUUUU...................... len:22 al:1
.................................................AUUCAGGgUGUAAAGGGAUUUUU..................... len:23 al:1
.................................................gUUCAGGAUGUAAAGGGAUUUUU..................... len:23 al:3
.................................................AUUCAGGgUGUAAAGGGAUUUU...................... len:22 al:3
.................................................AcUCAGGAUGUAAAGGGAUU........................ len:20 al:2
.................................................AUUCAGGAUGcAAAGGGAUUUUU..................... len:23 al:1
.................................................gUUCAGGAUGUAAAGGGAUUU....................... len:21 al:2
.................................................AUcCAGGAUGUAAAGGGAUUU....................... len:21 al:1
.................................................AUUCAGGAcGUAAAGGGAUUUU...................... len:22 al:5
.................................................AUUCAGGAUGUAAAGGGAU......................... len:19 al:10
.................................................AUUCAGGAUGUAAAGGGAUUUUUu.................... len:24 al:20
.................................................AUcCAGGAUGUAAAGGGAUUUU...................... len:22 al:1
.................................................AUUCAGGAUGUAAAGGGAUUU....................... len:21 al:55
.................................................AUUCAGGAUGUAAAGGGAUUUUU..................... len:23 al:94
..................................................UUCAGGAcGUAAAGGGAUUUU...................... len:21 al:1
..................................................UUCAGGAUGUAAAGGGAUUU....................... len:20 al:7
..................................................UUCAGGAUGUAAAGGGAUUUc...................... len:21 al:9
..................................................UUCAGGAUGUAAAGGGAUUc....................... len:20 al:3
..................................................UUCAGGAUGUAAAGGGAUUUaU..................... len:22 al:2
..................................................UUCAGGAUGUAAAGGGAUUUUUu.................... len:23 al:1
..................................................UUCAGGAUGUAAAGGGAUUUUU..................... len:22 al:31
..................................................UUCAGGAUGUAAAGGGAUUUUUAu................... len:24 al:2
..................................................UUCAGGAUGUAAAGGGAUUUU...................... len:21 al:80
..................................................UcCAGGAUGUAAAGGGAUUUUU..................... len:22 al:1
..................................................UUCAGGAUGUAAAGGGAUUUa...................... len:21 al:1
..................................................UUCAGGAUGUAAAGGGAU......................... len:18 al:11
..................................................cUCAGGAUGUAAAGGGAUUUU...................... len:21 al:1
..................................................UUCAGGAUGUAAAGGGAUcUUU..................... len:22 al:1
..................................................UUCAGGAUGUAAAGGGgUUUU...................... len:21 al:1
..................................................UUCAGGAUGUAAAGGGAUU........................ len:19 al:3
...................................................UCAGGAUGUAAAGGGAUUUUU..................... len:21 al:1
...................................................UCAGGAUGUAAAGGGAUUUc...................... len:20 al:1
...................................................UCAGGAUGUAAAGGGAUUU....................... len:19 al:2
...................................................UCAGGAUGUAAAGGGAUU........................ len:18 al:1