Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_5010:12340-12432 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_15329.ps.pdf
Locus Name: Cluster_15329
AUAUAAUGACUUGGUAAACAAGGAAAGCCUAUAAUAUAAGUCAUUUAAUGACUUAUAUUAUAGACUUUCCUUGUUUACCAUCUGUUUCAUACA
.....((((..((((((((((((((((.((((((((((((((((...)))))))))))))))).))))))))))))))))......))))... (-44.10)
AUAUAAUGACUUGGUAAACA......................................................................... len:20 al:5
.UAUAAUGACUUGGUAAAC.......................................................................... len:18 al:1
.UAUAAUGACUUGGUAAACA......................................................................... len:19 al:7
..AUAAUGACUUGGUAAACA......................................................................... len:18 al:1
...................AAGGAAAGCCUAUAAUAUAAGa.................................................... len:22 al:1
...................AAGGAAAGCCUAUAAUAUAAGU.................................................... len:22 al:20
...................AAGGAAAGCCUAUAAUAUAAGUCu.................................................. len:24 al:1
....................AGGAAAGCCUAUAAUAUAAGc.................................................... len:21 al:1
....................AGGAAAGCCUAUAAUAUAAGUCA.................................................. len:23 al:5
....................AGGAAAGCCUAUAAUAUAAGU.................................................... len:21 al:3
....................AGGAAAGCCUAUAAUAUA....................................................... len:18 al:2
.......................AAAGCCUAUAAUAUAAGUCA.................................................. len:20 al:1
.........................................CAUUUAAUGACUUAUAUUAUAGACUUU......................... len:27 al:1
...........................................UUUAAUGACUUAUAUUAUAGACUUUCCUUG.................... len:30 al:4
...........................................UUUAAUGACUUAUAUUAUAGACUUUCCUUa.................... len:30 al:1
.................................................aACUUAUAUUAUAGACUUUCCUU..................... len:23 al:2
..................................................gCUUAUAUUAUAGACUUUCCUUG.................... len:23 al:1
..................................................ACUUAUAUUAUAGACUUUCCUUGc................... len:24 al:1
..................................................ACUUAUAUUAUAGACUUUCa....................... len:20 al:2
..................................................ACUUAUAUUAcAGACUUUCCUUG.................... len:23 al:1
..................................................uCUUAUAUUAUAGACUUUCCUUG.................... len:23 al:1
..................................................ACUUAUAUUAUAGACUUUCCUUGa................... len:24 al:3
..................................................ACUUAUAUUAUAGACUUUCCUUGg................... len:24 al:6
..................................................ACUUAUAUUgUAGACUUUCCUUG.................... len:23 al:1
..................................................ACUUAUAUUAUAGACUUUCCg...................... len:21 al:1
..................................................ACUUAUAUUAUAGACUUUCCUc..................... len:22 al:4
..................................................ACUUAUAUUAUAGACUUUCCUU..................... len:22 al:15
..................................................ACUUAUAUUAUgGACUUUCCUUG.................... len:23 al:1
..................................................ACUUAUAcUAUAGACUUUCCU...................... len:21 al:1
..................................................ACUUAUAUUAUAGACUUUCu....................... len:20 al:1
..................................................ACUUAUAUUAUAGACUUUuCUUG.................... len:23 al:1
..................................................ACUUAUAUUAUAGACUUUCCUUuU................... len:24 al:6
..................................................ACUUAUAUUAUAGACUUUCCcUG.................... len:23 al:1
..................................................gCUUAUAUUAUAGACUUUCC....................... len:20 al:1
..................................................ACUUAUAUUAUAGACcUUCCUUG.................... len:23 al:1
..................................................ACUUAUAUUAUAGACUUUCuUUG.................... len:23 al:2
..................................................ACcUAUAUUAUAGACUUUCCUUG.................... len:23 al:2
..................................................ACUUAUAUUAUAGACUUU......................... len:18 al:5
..................................................ACUUAUAUUAUAGACUUUCCUUc.................... len:23 al:5
..................................................ACUUAUAUUAUAGACUUUCC....................... len:20 al:11
..................................................ACUUAUAUUAUAGACUUUCCU...................... len:21 al:27
..................................................AuUUAUAUUAUAGACUUUCCUUG.................... len:23 al:2
..................................................ACUUAUAUUAUAGACUUUCCUUa.................... len:23 al:24
..................................................ACUUAUAUUAUAGACUUUCCa...................... len:21 al:2
..................................................uCUUAUAUUAUAGACUUUCCUU..................... len:22 al:1
..................................................ACUUAUAUUAUAGACUcUCCUU..................... len:22 al:2
..................................................ACUUAUAUUAUAGACUUUCCc...................... len:21 al:9
..................................................ACUUAUAUUAUAGACUUUCCUUGUa.................. len:25 al:2
..................................................ACUUAUAUUAUAGACUUUCCUUG.................... len:23 al:233
..................................................ACUUAUAUUAUAGACUUUCCUcG.................... len:23 al:1
..................................................ACUUAUAUUAUAGACUUc......................... len:18 al:1
..................................................ACUUAUAUUAUAGACUUUCCUUu.................... len:23 al:39
..................................................ACUUAUAUUAUAGACUcUCCU...................... len:21 al:1
..................................................ACUUAUAUUAUAGACUUUCCUgG.................... len:23 al:1
..................................................ACUUAUAUUAUAGACUUUC........................ len:19 al:3
..................................................ACUUAUAUUAUAGACUUUCCUUGU................... len:24 al:28
...................................................CUUAUAUUAUAGACUUUCCUc..................... len:21 al:3
...................................................CUUAUAUUAUAGACUUUCCUUGa................... len:23 al:1
...................................................CUUAUAUUAUAGACUUUCCUUG.................... len:22 al:19
...................................................CUUAUAUUAUAGACUUUCCUUuU................... len:23 al:1
...................................................CUUAUAUUAUAGACUUUCCUU..................... len:21 al:17
...................................................CUUAUAUUgUAGACUUUCCUUG.................... len:22 al:1
...................................................CUUAUAUUAUAGACUUUCu....................... len:19 al:1
...................................................CUUAUAUUAUAGACUUUCCUUu.................... len:22 al:31
...................................................CUUAUAUUAUAGACUUUCCU...................... len:20 al:2
...................................................CUUAUAUUAUAGACUUUCC....................... len:19 al:1
...................................................CUUAUAUUAUAGACUUUCCUUGc................... len:23 al:2
...................................................CUUAUAUUAUAGACUUUCCUUa.................... len:22 al:1
...................................................CUUAUAUUAUAGACUUUCCUUc.................... len:22 al:1
....................................................UUAUAUUAUAGACUUUCCUUc.................... len:21 al:18
....................................................UUAUAUcAUAGACUUUCCUUG.................... len:21 al:6
....................................................UUAUAUUAUgGACUUUCCUU..................... len:20 al:1
....................................................UUAUAUUAUAGACUUUCCU...................... len:19 al:153
....................................................UUAUgUUAUAGACUUUCCUUG.................... len:21 al:5
....................................................UUAUAUUAUAGACUUUCu....................... len:18 al:7
....................................................UUAUAUUAUAGACUUUCCUUGgU.................. len:23 al:1
....................................................UUAUAUUAUAGACUUUCuUUGU................... len:22 al:2
....................................................UUAUAUUcUAGACUUUCCUUG.................... len:21 al:1
....................................................UUAcAUUAUAGACUUUCCUUG.................... len:21 al:3
....................................................UUAUAUUAUAGACUUUCCUUGUaU................. len:24 al:6
....................................................UUAUAUUAUAGACUUUCCUc..................... len:20 al:30
....................................................UUAUAUUAUAGACUUUCCUcGUU.................. len:23 al:1
....................................................UUAUAUUAUAGACUUUCCUcG.................... len:21 al:6
....................................................UUAUAUUAUAGACUUUCCUUGUUc................. len:24 al:2
....................................................UUAcAUUAUAGACUUUCCUUGU................... len:22 al:3
....................................................UUAUAUUAUcGACUUUCCUUGU................... len:22 al:1
....................................................UUAUcUUAUAGACUUUCCUU..................... len:20 al:1
....................................................UUAUAUUAUAGACUUUCCcUG.................... len:21 al:4
....................................................UUAUAUUAUAGACUUUCCUUGUUUu................ len:25 al:14
....................................................UUAUAUUAcAGACUUUCCU...................... len:19 al:2
....................................................UUAUAUUAUAGACUUUCuUUG.................... len:21 al:5
....................................................cUAUAUUAUAGACUUUCCUUGUU.................. len:23 al:1
....................................................UUAUAUUAUAGACUUUCCUUa.................... len:21 al:150
....................................................UUAUAUUAUAGACUUUCCUUGa................... len:22 al:43
....................................................UcAUAUUAUAGACUUUCCUUG.................... len:21 al:5
....................................................UUAUAUUAUAGACUUUCCcUGU................... len:22 al:1
....................................................UUAUAUUAUAGACUcUCCUUGUU.................. len:23 al:3
....................................................UUAUAUUAUAGACUUUCCUUGg................... len:22 al:13
....................................................UUAUAUUAUAGACUUcCCUUGUU.................. len:23 al:1
....................................................UUAUAUUAUAGACUUUCCc...................... len:19 al:20
....................................................UUAUAUUAUAGACUUaCCUUGU................... len:22 al:1
....................................................UUAUAUUAUAGACUUUCCUUuUU.................. len:23 al:4
....................................................UUAUAUUAUAGACUaUCCUUGU................... len:22 al:2
....................................................UUAUAUcAUAGACUUUCCUUGU................... len:22 al:1
....................................................UUAUAUUAUAGACUUUCCaU..................... len:20 al:1
....................................................cUAUAUUAUAGACUUUCCUUG.................... len:21 al:4
....................................................UUAUAUUAUAGACaUUCCUUG.................... len:21 al:1
....................................................UUAUAUUAUAGACUUUCCUcGU................... len:22 al:5
....................................................UUAUAUUcUAGACUUUCCUUGU................... len:22 al:1
....................................................aUAUAUUAUAGACUUUCCUUG.................... len:21 al:1
....................................................UUAUAUUAcAGACUUUCCUUGU................... len:22 al:1
....................................................UUAUAUUAUAGACUUcCCUUGU................... len:22 al:7
....................................................UUAUAUUgUAGACUUUCCUUGU................... len:22 al:4
....................................................UcAUAUUAUAGACUUUCCU...................... len:19 al:3
....................................................UUAUAUUAUAGACUUUCCUUGUa.................. len:23 al:28
....................................................UUAUAUUAUgGACUUUCCUUGU................... len:22 al:7
....................................................UUAUAUUAUAGACUcUCCUUG.................... len:21 al:7
....................................................UUAUAUcAUAGACUUUCCU...................... len:19 al:1
....................................................UUAUcUUAUAGACUUUCCUUG.................... len:21 al:1
....................................................UUAUAUUAUAGACUcUCCUUGU................... len:22 al:4
....................................................UUAUAUUAUAGACUUUCCUUG.................... len:21 al:2059
....................................................UgAUAUUAUAGACUUUCCUUG.................... len:21 al:1
....................................................UUAUAUUAUAGACUUUCCUa..................... len:20 al:2
....................................................UUAUAcUAUAGACUUUCCUU..................... len:20 al:1
....................................................UUAUAUUAUAGACUUUaCUUGU................... len:22 al:1
....................................................UUAUAUUAUAGACUUUCC....................... len:18 al:34
....................................................UUAUAUUAUAGACUUUCCUUuU................... len:22 al:60
....................................................UUAUAcUAUAGACUUUCCUUG.................... len:21 al:3
....................................................UUAUAUUAUAGACUUUCCUUGUU.................. len:23 al:220
....................................................UUAUAUUAUAGACcUUCCUUGUU.................. len:23 al:1
....................................................UUAUAUUAUAGACUUUCCUUu.................... len:21 al:160
....................................................UUAUAUUAUAGACUUUCCUUGU................... len:22 al:1447
....................................................UUAUcUUAUAGACUUUCCUUGU................... len:22 al:1
....................................................UUAUAUUAUAGACUUUCCUUGaUU................. len:24 al:14
....................................................cUAUAUUAUAGACUUUCCUUGU................... len:22 al:9
....................................................UcAUAUUAUAGACUUUCCUUGU................... len:22 al:4
....................................................UUAUAUUAUAGACUUUCa....................... len:18 al:1
....................................................UUgUAUUAUAGACUUUCCUUG.................... len:21 al:7
....................................................UUAUAUUAUAGACcUUCCUUGU................... len:22 al:11
....................................................UUAUAUUAUAGACUUUCCUUGUc.................. len:23 al:25
....................................................UUAUAcUAUAGACUUUCCUUGUU.................. len:23 al:1
....................................................UUAUAUUAUAaACUUUCCUUG.................... len:21 al:1
....................................................UUAUAUUAUAGACUUUCCUgG.................... len:21 al:2
....................................................UUAUAcUAUAGACUUUCCUUGU................... len:22 al:2
....................................................UUAUAUUAUAGACUUUCCUUaU................... len:22 al:7
....................................................UUAUAUUAUAGACUUUCCg...................... len:19 al:4
....................................................UUAUAUUAUAGACUUUCCUUGc................... len:22 al:199
....................................................UUAUAUUAUAGACUUcCCUUG.................... len:21 al:4
....................................................UUAUAUUAUgGACUUUCCUUGUU.................. len:23 al:3
....................................................UUAUAUUAcAGACUUUCCUUG.................... len:21 al:6
....................................................UUAUAUUAUuGACUUUCCUUGU................... len:22 al:2
....................................................UUAUAUUAUAGACUUUCCgUG.................... len:21 al:1
....................................................UUAUAUUAUgGACUUUCCUUG.................... len:21 al:9
....................................................UUcUAUUAUAGACUUUCCUU..................... len:20 al:3
....................................................UgAUAUUAUAGACUUUCCUUGU................... len:22 al:1
....................................................UUAUAUUAUAGACUUUCCUUuUUU................. len:24 al:16
....................................................UUAUAUUAUAGACcUUCCUUG.................... len:21 al:23
....................................................UUAUAUUAUAGACUUUCCUU..................... len:20 al:260
....................................................UUAUAUUgUAGACUUUCCUUG.................... len:21 al:10
....................................................UUAUAUUgUAGACUUUCCU...................... len:19 al:2
....................................................UUgUAUUAUAGACUUUCCUUGU................... len:22 al:2
....................................................cUAUAUUAUAGACUUUCCUU..................... len:20 al:2
....................................................UUAUAUUAUAGACUUUCCUUGaU.................. len:23 al:99
....................................................UUAcAUUAUAGACUUUCCUU..................... len:20 al:1
....................................................UUAUgUUAUAGACUUUCCUUGU................... len:22 al:2
....................................................UUAUAUUAUAGACUUUCCUUGUUU................. len:24 al:50
....................................................UUAUAUUAUAGACUUUCCUUGcU.................. len:23 al:1
....................................................UUAUAUUAcAGACUUUCCUU..................... len:20 al:1
....................................................UUAUAUUAUAGACUUUCCgU..................... len:20 al:2
....................................................UUAUAUUAUAGACUUUCCa...................... len:19 al:4
....................................................UUcUAUUAUAGACUUUCCUUGU................... len:22 al:2
....................................................UcAUAUUAUAGACUUUCCUUGUU.................. len:23 al:2
....................................................UUAUgUUAUAGACUUUCCU...................... len:19 al:1
.....................................................UAUAUUAUAGACUUUuCU...................... len:18 al:1
.....................................................aAUAUUAUAGACUUUCCU...................... len:18 al:1
.....................................................UAUAUUAUAGACUUUCCUUa.................... len:20 al:1
.....................................................UAUAUUAUAGACUUUCCUU..................... len:19 al:3
.....................................................UAUAUUAUAGACUUUCCUUGU................... len:21 al:5
.....................................................UAUAUUAUAGACUUUCCUUG.................... len:20 al:3
.....................................................UAUAUUAUAGACUUUCCUUu.................... len:20 al:10
......................................................AUgUUAUAGACUUUCCUUG.................... len:19 al:1
......................................................AUAUUAUgGACUUUCCUUGU................... len:20 al:1
......................................................AUAUUAUAGACUUUCCUUG.................... len:19 al:9
......................................................AUAUUAUAGACcUUCCUUG.................... len:19 al:2
......................................................AUAUUAUAGACUUUCCUUGU................... len:20 al:22
.......................................................UAUUAUAGACUUUCCUUa.................... len:18 al:1
.......................................................UAUUAUAGACUUUCCUUGU................... len:19 al:88
.......................................................UAUUAUAGACUUUCCUUGUU.................. len:20 al:15
.......................................................UAUUAUAGACUUUCCUUG.................... len:18 al:8
.......................................................UAUUAUAGACUUUCCUcGUU.................. len:20 al:1
.......................................................UAUUAUAGACUUUCCUUGc................... len:19 al:10
.......................................................UAUUAUAGACUUUCCUUGUa.................. len:20 al:5
.......................................................UAUUAUAGACUUUCCUUGUaUA................ len:22 al:2
.......................................................UAUUAUAGACUUUCCUUGUUU................. len:21 al:1
.......................................................UAUUcUAGACUUUCCUUGUU.................. len:20 al:1
.......................................................UAUUAUAGACUUUCCUUGUaU................. len:21 al:1
.......................................................UAUUAUAGACUUUCCUUGUc.................. len:20 al:1
........................................................AUUAUAGACUUUCCUUGU................... len:18 al:3