Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_3893:3797-3890 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_14747.ps.pdf
Locus Name: Cluster_14747
UUCAAUAUUUUUAGGCGUUUUUAAGAAUAUCAGUGAUAGGGAUUUUUAAAUGCCUAUCACUGAUAUUCUUAAUAACGCCUAUAAAAACUAAAGU
.......(((.((((((((.((((((((((((((((((((.(((....))).)))))))))))))))))))).)))))))).)))......... (-45.80)
UUCAAUAUUUUUAGGCGUUU.......................................................................... len:20 al:3
.UCAAUAUUUUUAGGCGUUaU......................................................................... len:20 al:1
.UCAAUgUUUUUAGGCGUUU.......................................................................... len:19 al:1
..CAAUAUUUUUAGGCGUUU.......................................................................... len:18 al:1
...................UUUgAGAAUAUCAGUGAU......................................................... len:18 al:5
...................UUUAAGAAUAUCAGUGAUA........................................................ len:19 al:2
...................UUUAAGAAUAUCAGUGAUAGGa..................................................... len:22 al:6
...................UUUAAGAAUgUCAGUGAUAGGGA.................................................... len:23 al:4
...................UUUAAGAAUAUCAGUGAUAGGG..................................................... len:22 al:33
...................aUUAAGAAUAUCAGUGAUAGGGA.................................................... len:23 al:1
...................UUUAAGAAUAUCAGUGAUAa....................................................... len:20 al:1
...................UUUAAGAAUAUCAGUGAUAG....................................................... len:20 al:1
...................UUUAAGAAUAUCAGUGAUAGGc..................................................... len:22 al:2
...................UUUAAGAAUAUCAGUGAU......................................................... len:18 al:15
...................UUUAAGAAUAUCAGUGAUAGGu..................................................... len:22 al:2
...................UUUAAGAAUAUCAGUGAUAGGGAc................................................... len:24 al:1
...................UUUAAGAAUAUCAGUGAUAGGcA.................................................... len:23 al:2
...................UUUAAGAAUAUCAGUGAUAGG...................................................... len:21 al:3
...................UUUAAGAAUAUCAGUGAa......................................................... len:18 al:1
...................UUUAAGAAUAUCAGUGAc......................................................... len:18 al:2
...................UUUAAGAAUAUCAGUGAUAGGGAU................................................... len:24 al:2
...................cUUAAGAAUAUCAGUGAUAGGGA.................................................... len:23 al:1
...................cUUAAGAAUAUCAGUGAUAGGG..................................................... len:22 al:1
...................UUUAAGAAUAUCAGUGAUAGGGA.................................................... len:23 al:13
...................UUUAAGAAUgUCAGUGAU......................................................... len:18 al:2
....................UUAAGAAUAUCAGUGgUAGGG..................................................... len:21 al:2
....................UUAAGAAUAUCAGUGAUgGG...................................................... len:20 al:1
....................UUAuGAAUAUCAGUGAUAGGGA.................................................... len:22 al:1
....................UUAAGAAUAUCgGUGAUAGG...................................................... len:20 al:1
....................UUAAGAAUAUCAGUGAcAGGG..................................................... len:21 al:2
....................UUAAGAAUAUCAGUGAUuG....................................................... len:19 al:1
....................UUAAGAAUAUCAGUGAUAG....................................................... len:19 al:66
....................UUAAGAAUAUCAGUGAUAGaGA.................................................... len:22 al:2
....................UUgAGAAUAUCAGUGAUAGGGAUUU................................................. len:25 al:1
....................UUAAGAAUAUCAGcGAUAGGGA.................................................... len:22 al:9
....................UcAAGAAUAUCAGUGAUAGGGAU................................................... len:23 al:1
....................UUAAGAAUAUCAGUGAUAGa...................................................... len:20 al:7
....................UUAAGAAUAUCAGUGAUgGGGAU................................................... len:23 al:4
....................UUAAGAAUAUCAGUGAUAGGGAg................................................... len:23 al:3
....................UUAAGAAcAUCAGUGAUAGGGAU................................................... len:23 al:3
....................UUAAGAAcAUCAGUGAUAGGGA.................................................... len:22 al:4
....................UUAAGAAUAUCAGUGAUAGGGAUU.................................................. len:24 al:234
....................UUAgGAAUAUCAGUGAUA........................................................ len:18 al:2
....................UUAgGAAUAUCAGUGAUAG....................................................... len:19 al:1
....................UUAAGAAUAUCAGUGgUAGGGAUU.................................................. len:24 al:2
....................UUAAGAAUAUCAGUGAUAGGG..................................................... len:21 al:784
....................UUAAGAAUAUCAGcGAUAG....................................................... len:19 al:1
....................UUAAGAAUAUCAGUGAcAGGGA.................................................... len:22 al:5
....................UUAAGAAUAUCAGUGAUAGGGu.................................................... len:22 al:65
....................UUAAGAAUAUCAGUGAUAGGGAcU.................................................. len:24 al:1
....................UUAAGAAUAUCAGUGAUAuG...................................................... len:20 al:1
....................UUAAGAAUAUCAGUGAUAGGcAUUUUU............................................... len:27 al:1
....................UUAAGAAUAUCAGUGAUAGu...................................................... len:20 al:2
....................UUAAGAAUAUCAGUGAUAGGaA.................................................... len:22 al:1
....................UUAAGAAUAUCAGUGAUAGGGgU................................................... len:23 al:5
....................UUAAGAAUAUCAGUGAcAGGGAU................................................... len:23 al:3
....................UUAAGAAUAUCAGUGA.......................................................... len:16 al:4
....................UUAAGAgUAUCAGUGAUAGGGA.................................................... len:22 al:4
....................UUAAGAAaAUCAGUGAUAGGGAU................................................... len:23 al:1
....................UUgAGAAUAUCAGUGAUAGGG..................................................... len:21 al:6
....................UUAAGAAUAUCAGUGAUAGGGAc................................................... len:23 al:70
....................UUAAGAAUAUCAGUG........................................................... len:15 al:1
....................UUAAGAAUAUCAGUGAUAu....................................................... len:19 al:1
....................UUAAGAAUAcCAGUGAUAGGGA.................................................... len:22 al:7
....................UUAAGgAUAUCAGUGAUAGGGA.................................................... len:22 al:2
....................UcAAGAAUAUCAGUGAUAGGGAUU.................................................. len:24 al:1
....................UUAAGAAUAUCAGUGAUAGGGAa................................................... len:23 al:39
....................UUAAGAcUAUCAGUGAUAGGGAU................................................... len:23 al:1
....................UUAAGAAUAUCAGUGAUAaGGA.................................................... len:22 al:1
....................UUAgGAAUAUCAGUGAUAGGGA.................................................... len:22 al:10
....................UUAAGAAUAUCgGUGAUAGGGAUU.................................................. len:24 al:2
....................UUAAGAAUAUCAGUGAUAc....................................................... len:19 al:1
....................UUAAGAAUuUCAGUGAUAGGGA.................................................... len:22 al:1
....................UUAAGAAUcUCAGUGAUAGGGA.................................................... len:22 al:1
....................UUAAGAAUAUCAGUGAUgGGGA.................................................... len:22 al:10
....................UUAAGAAUAUCAGUGAUAGGGAaU.................................................. len:24 al:54
....................UUAAGAAUAUCAGUGAUAGaG..................................................... len:21 al:1
....................cUAAGAAUAUCAGUGAUAG....................................................... len:19 al:1
....................UUAAGAAUAUCAGUGAU......................................................... len:17 al:33
....................UUAgGAAUAUCAGUGAUAGGG..................................................... len:21 al:2
....................UUAAGAAcAUCAGUGAUAGGG..................................................... len:21 al:2
....................UUAAGAAUAUCAGUGAUuGGGA.................................................... len:22 al:2
....................aUAAGAAUAUCAGUGAUAGGGA.................................................... len:22 al:1
....................UUAAGAAUAUCAGUGAgAGGGA.................................................... len:22 al:1
....................UUAAGAAUAcCAGUGAUA........................................................ len:18 al:1
....................UUAAGAAUAUCgGUGAUAG....................................................... len:19 al:1
....................UUAAGAAUAUCAGUGAUAGGGc.................................................... len:22 al:5
....................UUAAGAAUAUCAGcGAUAGGGAUU.................................................. len:24 al:1
....................UUgAGAAUAUCAGUGAUAGGGAUU.................................................. len:24 al:5
....................UUAAGAAUAUCcGUGAUAGGGA.................................................... len:22 al:1
....................UUAAGgAUAUCAGUGAUAGGG..................................................... len:21 al:6
....................cUAAGAAUAUCAGUGAUAGGGAUU.................................................. len:24 al:2
....................UUAAGAAUAUCAGcGAUAGGG..................................................... len:21 al:2
....................UUAAGgAUAUCAGUGAUA........................................................ len:18 al:1
....................UUAAGAAUAUCAGUGAUAGGGA.................................................... len:22 al:1629
....................UUAAGAgUAUCAGUGAUAGGGAU................................................... len:23 al:1
....................UUAAGAAUAUCuGUGAUAGGG..................................................... len:21 al:1
....................UUAAGAAUAUCAGUGuUAGGGA.................................................... len:22 al:1
....................UUAAGAAUAUuAGUGAUAGGGA.................................................... len:22 al:2
....................UUAAGAAUAUCAGUGAUu........................................................ len:18 al:4
....................UUAAGAAUAUCAGUGAUgGGGAUU.................................................. len:24 al:1
....................UUAAGAAUAUCAaUGAUAGGG..................................................... len:21 al:1
....................UUAAGAcUAUCAGUGAUAGGG..................................................... len:21 al:2
....................UUAAGAAUAcCAGUGAUAGGGAU................................................... len:23 al:3
....................UUAAGAAUAUCAGUGAUAGGGAaUUU................................................ len:26 al:1
....................UUAAGAAUAUCAGUGAUAGGcAUUUU................................................ len:26 al:1
....................UUAAGAAUAUCAGUGAUgGGG..................................................... len:21 al:4
....................UUAAGAgUAUCAGUGAUAGGG..................................................... len:21 al:1
....................UUAAGAAUAUCcGUGAUAGGGAU................................................... len:23 al:1
....................UUAAGAAUAUCgGUGAUAGGG..................................................... len:21 al:2
....................UUAAGAcUAUCAGUGAUAGGGA.................................................... len:22 al:2
....................UUAAGAAUAUCAGUGAUAGGGAUg.................................................. len:24 al:1
....................UUgAGAAUAUCAGUGAUA........................................................ len:18 al:1
....................UUAAGgAUAUCAGUGAUAGGGAU................................................... len:23 al:6
....................UUAAGAAUAUCAGUGAUA........................................................ len:18 al:93
....................aUAAGAAUAUCAGUGAUAGGGAU................................................... len:23 al:1
....................UUAgGAAUAUCAGUGAUAGGGAU................................................... len:23 al:4
....................UUAAGAAUAUCgGUGAUAGGGAU................................................... len:23 al:3
....................cUAAGAAUAUCAGUGAUAGGGA.................................................... len:22 al:9
....................UUAAGAAUAUCAGUGAUAGGGAaUUUU............................................... len:27 al:3
....................UUAAGAAUAUCAGUGAUAGGGAUUU................................................. len:25 al:12
....................UUAAGAAUAUCAGUGAUAGGa..................................................... len:21 al:41
....................cUAAGAAUAUCAGUGAUAGGG..................................................... len:21 al:2
....................UcAAGAAUAUCAGUGAUAGGGA.................................................... len:22 al:2
....................UUAAGAAUAUCAGUGAUAGGGg.................................................... len:22 al:27
....................UUAAGAAUAUCAGUGAUAGG...................................................... len:20 al:48
....................UUAAGAAUAcCAGUGAUAGGG..................................................... len:21 al:4
....................UUAAGAAUAUCAGUGAUAGGGAU................................................... len:23 al:664
....................UUAAGAAUAUCAGUGAUAGGGAgU.................................................. len:24 al:1
....................UUAgGAAUAUCAGUGAUAGGGAUU.................................................. len:24 al:2
....................UUAAGAAUAUCgGUGAUAGGGA.................................................... len:22 al:6
....................aUAAGAAUAUCAGUGAUAGGG..................................................... len:21 al:1
....................UUAAGAAUAUCAGgGAUAGGGA.................................................... len:22 al:1
....................UUAAGAAUAUCAGUGgUAGGGAU................................................... len:23 al:1
....................UUAAGAAUAUCAGUGAUAGGGAaUU................................................. len:25 al:14
....................UUAAGAAUAUCAGUGgUAGGGA.................................................... len:22 al:7
....................UUAAGAAUgUCAGUGAUAGGGAU................................................... len:23 al:4
....................UUAAGAAUAUCAGUGAUAGGGAUa.................................................. len:24 al:5
....................UUAAGAAUgUCAGUGAUAGGG..................................................... len:21 al:8
....................UUAAGAAUAUCAGUGAUAGGGAUc.................................................. len:24 al:17
....................UUgAGAAUAUCAGUGAUAGGGA.................................................... len:22 al:20
....................UUAAGAAUAUCAGUGAUAGGGAUUgU................................................ len:26 al:2
....................UUAAGAAUAUuAGUGAUAGGG..................................................... len:21 al:1
....................UUAAGAAUAUCAGUGAUAa....................................................... len:19 al:5
....................UUAAGAAUAUCAGUGAUAGGu..................................................... len:21 al:30
....................UUAAGAAUgUCAGUGAUAGGGA.................................................... len:22 al:9
....................UUAAGAAUAUCAGUGgUA........................................................ len:18 al:3
....................UgAAGAAUAUCAGUGAUAGGGAU................................................... len:23 al:1
.....................UAAGAAUAUCAGUGAUAGGGAUg.................................................. len:23 al:1
.....................UAAGAAUAUCAGUGAUAGa...................................................... len:19 al:2
.....................UAgGAAUAUCAGUGAUAGGGAUU.................................................. len:23 al:4
.....................UAAGAAUAUCAGUGAUAGGGg.................................................... len:21 al:3
.....................UAAGAAUAUCAGUGAUAGGGAcU.................................................. len:23 al:1
.....................UAAGAAUAUCAGUGAUAGGGA.................................................... len:21 al:75
.....................UAAGAAUAUCAGUaAUAGGGA.................................................... len:21 al:1
.....................aAAGAAUAUCAGUGAUAGGGAUU.................................................. len:23 al:1
.....................UAAGAAUAUCAGUGAUAGGGAgU.................................................. len:23 al:2
.....................UAAGAAUgUCAGUGAUAGGGAUU.................................................. len:23 al:5
.....................UAAGAAUAUuAGUGAUAGGGA.................................................... len:21 al:3
.....................UAAGgAUAUCAGUGAU......................................................... len:16 al:1
.....................UAAGAAUAUCAGUGgUAGGGAU................................................... len:22 al:1
.....................UAAGAAUAUCAGUGAUAGGGuU................................................... len:22 al:1
.....................UAAGAAUAUCAGUGAUAGGGgUU.................................................. len:23 al:1
.....................UAAGAAUAUCAGUGAUAGGGAaUU................................................. len:24 al:1
.....................UAAGAAUgUCAGUGAUAGGG..................................................... len:20 al:1
.....................UAAGAcUAUCAGUGAUAGGGAUU.................................................. len:23 al:1
.....................UAAGAAUAUCAGcGAUAGGGA.................................................... len:21 al:2
.....................UAAGAAUAUCAGUGAUAGGGAU................................................... len:22 al:110
.....................UAAGAAUAUCAGUGAUAGGGAUa.................................................. len:23 al:1
.....................UAAGAAUAUCAGUGAUAGGa..................................................... len:20 al:5
.....................UAAGAAUAUCAGUGAUAGGGAaU.................................................. len:23 al:2
.....................UAAGAAUAUCAGUGAUAGG...................................................... len:19 al:4
.....................UAAGAAUAUCAGUGAUAGGG..................................................... len:20 al:52
.....................UAAGgAUAUCAGUGAUAGGGAUU.................................................. len:23 al:1
.....................UAAGAAUAUCAGUGAUAGGGAc................................................... len:22 al:16
.....................UAAGAAUAUCAGUGAUAGGGu.................................................... len:21 al:6
.....................aAAGAAUAUCAGUGAUAGGGAU................................................... len:22 al:2
.....................UAAGAAUAUCAGUGAU......................................................... len:16 al:2
.....................UAAGAAUAUCAGUGAUAGGGAUU.................................................. len:23 al:93
.....................UAAGAAUAUCAGUGgUAGGG..................................................... len:20 al:1
.....................UAAGAAUAUCAGUGAUAGGu..................................................... len:20 al:4
.....................UAAGAAUAUCAGUGAUAGaGAU................................................... len:22 al:1
.....................UAAGAAUAUCAGUGAUAG....................................................... len:18 al:13
.....................UAAGAAUAUCAGUGAUAGGGAUc.................................................. len:23 al:4
.....................UAAGAAUgUCAGUGAUAGGGA.................................................... len:21 al:1
.....................cAAGAAUAUCAGUGAUAGGG..................................................... len:20 al:1
.....................cAAGAAUAUCAGUGAUAGGGAUU.................................................. len:23 al:1
.....................UAAGAAUAUCAGUGAUAGGGAg................................................... len:22 al:2
.....................UAAGAAUAUCAGcGAUAGGGAUU.................................................. len:23 al:1
.....................UAAGAAUAUCAGUGAUAGGGAa................................................... len:22 al:9
.....................UAAGAAUAUCAGUGAUgGGG..................................................... len:20 al:1
......................gAGAAUAUCAGUGAUAGGGA.................................................... len:20 al:1
......................AAGAAUAUCAGUGAUAGG...................................................... len:18 al:1
......................AAGAAUAUCAGUGAUAGGG..................................................... len:19 al:4
......................AAGAAUAUCAGUGAUAGGGA.................................................... len:20 al:3
......................AAGAAUAUCAGUGAUAGGu..................................................... len:19 al:1
......................AAGAAUAUCAGUGAUAGGGAU................................................... len:21 al:2
........................GAAUAUCAGUGAUAGGGAU................................................... len:19 al:4
........................aAAUAUCAGUGAUAGGGAU................................................... len:19 al:1
...........................UAUCAGUGAUAGGGAUUUUUAAAUGCCU....................................... len:28 al:1
..........................................UUUUUAAAUGCCUAUCACU................................. len:19 al:1
...........................................gUUUAAAUGCCUAUCACUG................................ len:19 al:1
...........................................UUUUAAAUGCCUAUCACUG................................ len:19 al:1
..................................................UGCCUAUCACUGAUAUUCUUu....................... len:21 al:1
..................................................UcCCUAUCACUGAUAUUCUUAAU..................... len:23 al:1
..................................................UGCCUAUCACUGAcAUUCU......................... len:19 al:1
..................................................UGCCUAUCACUGAUAUcCUUA....................... len:21 al:1
..................................................UGCCUAUCACUGAUAUUCUUAAUAc................... len:25 al:4
..................................................UGCCUAUCACUGAUAUUCUUAAc..................... len:23 al:4
..................................................UGCCUAUCACUGAUAUUCU......................... len:19 al:7
..................................................UGCCUAUCACUGAUAUUCUUA....................... len:21 al:11
..................................................UGCCUAUCACUGAUAUUCUU........................ len:20 al:11
..................................................UGCCUAUCACUGAUAUUCUUAAU..................... len:23 al:32
....................................................CCUAUCACUGAUAUUCUUgAU..................... len:21 al:1
....................................................CCUAUCACUGgUAUUCUUAAU..................... len:21 al:2
....................................................CCUAUCACUGAUAUUCUUAAUAc................... len:23 al:2
....................................................CCUAUCACUGAUAUUCUUA....................... len:19 al:7
....................................................CCUAUCACUGAUAUUCUUAAc..................... len:21 al:3
....................................................CCUAUCACUGAUAUUCUUAAUA.................... len:22 al:110
....................................................CCUAUCACUGAUAUUCUUAAg..................... len:21 al:1
....................................................CCUAUCACUGAUAcUCUUAAUA.................... len:22 al:1
....................................................CCUAcCACUGAUAUUCUUAAU..................... len:21 al:1
....................................................CCUAUCACUGAUAUUCUUAAU..................... len:21 al:70
....................................................CCUAUCACgGAUAUUCUUAAUA.................... len:22 al:1
....................................................CCUAUCAuUGAUAUUCUUA....................... len:19 al:1
....................................................CCUAUCACUGAUAUUCcUAAUA.................... len:22 al:1
.....................................................CUAUCACUGAUAUUCUUAAUAA................... len:22 al:1
......................................................UAUCACUGAUAUUCUUAAU..................... len:19 al:24
......................................................UAUCACUGAUAUUCUUAAUAA................... len:21 al:2
......................................................UAUCACUGAUAUUCUUgAU..................... len:19 al:1
......................................................UAUCACUGAUAUUCUUAAUA.................... len:20 al:12
......................................................UAUCACUGAUAUUCUUA....................... len:17 al:1