Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_3707:36102-36199 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_14602.ps.pdf
Locus Name: Cluster_14602
GACCCAUGUUUGUCCUCUAACAUCAGGGUUCAAGUAUUCAUCCCUUUUGGCUGGUUGAACACUGAAACCCUGUGGUAGAUGGCAUAACAAAACUGUCA
(((...((((((((.((((.((.(((((((..(((.((((..((........)).)))).)))..))))))))).)))).)))).)))).....))). (-32.50)
.ACCCAUGUUUGUCCUCUA............................................................................... len:18 al:3
.ACCCAUGUUUGUCCUCUAA.............................................................................. len:19 al:14
....................CAUCAGGGUUCAAGUgUUCAUC........................................................ len:22 al:1
....................CAUCAGGGUUCAAGUAUU............................................................ len:18 al:1
....................CAUCAGGGUUCAAGUAUUCAUCu....................................................... len:23 al:3
....................CAcCAGGGUUCAAGUAUUCAUC........................................................ len:22 al:1
....................CAUCAGGGUUCAAGUAU............................................................. len:17 al:1
....................CAUCAGGGUUCAAGUAUUCAUC........................................................ len:22 al:17
....................CAUCAGGGUUCAAGUAUUCAU......................................................... len:21 al:2
....................CAUCAGGGUUCAAGUAUUCAUu........................................................ len:22 al:14
....................CAUCAGGGUUCAAGUAUUCAUCa....................................................... len:23 al:1
....................CAUCAGGGUUCAAGUAUUCAUCC....................................................... len:23 al:18
....................CAUCAGGGUcCAAGUAUUCAUC........................................................ len:22 al:1
.....................AUCAGGGUUCAAGUAUUCAUC........................................................ len:21 al:3
......................UCAGGGUUCgAGUAUUCAUCC....................................................... len:21 al:1
......................UCAGGGUUCAAGUAUUCAUC........................................................ len:20 al:1
......................UCAGGGUUCAAGUgUUCAUCC....................................................... len:21 al:1
.............................................UUUGGCUGGUUGAACACUGAAACCCUGUGGU...................... len:31 al:2
...............................................UGGCUGGUUGAACACUGAAACCCUGUGGU...................... len:29 al:1
.....................................................GUUGAACACUGAAACCCUGU......................... len:20 al:1
......................................................UUGAACACUGAAACCCUGU......................... len:19 al:975
......................................................UUGAgCACUGAAACCCUGU......................... len:19 al:3
......................................................UcGAACACUGAAACCCUGUGG....................... len:21 al:2
......................................................UUGAACACcGAAACCCUGU......................... len:19 al:1
......................................................UUGAACACUGAAACCCUGUa........................ len:20 al:5
......................................................UUGAACACUuAAACCCUGUGG....................... len:21 al:1
......................................................UUGAACACUGAAACCCcGUGG....................... len:21 al:1
......................................................UUGAACACUGAAACCCU........................... len:17 al:1
......................................................UUGAACgCUGAAACCCUGUG........................ len:20 al:1
......................................................UUGAACACUGAAgCCCUGU......................... len:19 al:2
......................................................cUGAACACUGAAACCCUGUGG....................... len:21 al:1
......................................................UUGAACACUGAAACCCUGUG........................ len:20 al:70
......................................................UUGAACACUGAAACCCUGUGGUAuA................... len:25 al:5
......................................................UUGAACAuUGAAACCCUGUGG....................... len:21 al:1
......................................................UUGAACACUGAgACCCUGU......................... len:19 al:2
......................................................UUGAACACUGAAACCCUGUGGa...................... len:22 al:11
......................................................UUGAACACUGAAACCCgGUGGU...................... len:22 al:1
......................................................UUGAACACUGAAAuCCUGUGGU...................... len:22 al:1
......................................................UUGAACgCUGAAACCCUGU......................... len:19 al:3
......................................................UUGAACACUGAAACCCUGUGG....................... len:21 al:92
......................................................UcGAACACUGAAACCCUG.......................... len:18 al:2
......................................................UUGAACACUGAAACCCaGUGGU...................... len:22 al:1
......................................................UUGAACACUGAAACCCUGUGc....................... len:21 al:1
......................................................UUGAACACUGAAACC............................. len:15 al:1
......................................................UUGAACACUGAAACCCUGa......................... len:19 al:9
......................................................UUGAACACUGAAACCCUGUGGc...................... len:22 al:86
......................................................UUGAACACUaAAACCCUGU......................... len:19 al:2
......................................................UUGAACACUGAAACCCUGUGGUc..................... len:23 al:1
......................................................UUGAACACUGAAACCCUG.......................... len:18 al:247
......................................................UUGAACACUGAAACCgU........................... len:17 al:1
......................................................UUGAACACUGAAACCCUGUGGUu..................... len:23 al:12
......................................................UUGAACACUGAAACCCUGUGGUAu.................... len:24 al:24
......................................................UcGAACACUGAAACCCUGU......................... len:19 al:2
......................................................UUGAACACUGgAACCCUGUGG....................... len:21 al:1
......................................................UUGAACACUGAAACCCUGc......................... len:19 al:102
......................................................UUGAACACUGAAACCCUGg......................... len:19 al:10
......................................................UUGAACACUGcAACCCUGU......................... len:19 al:1
......................................................UUGAACgCUGAAACCCUGUGGU...................... len:22 al:1
......................................................UUGAgCACUGAAACCCUGUGGU...................... len:22 al:2
......................................................UUGAACACUGgAACCCUGU......................... len:19 al:4
......................................................UUGAACACUGuAACCCUGUGGU...................... len:22 al:1
......................................................UUGAACACUGAAACCCUGUu........................ len:20 al:1
......................................................UUGgACACUGAAACCCUGU......................... len:19 al:3
......................................................UUGAACACUGAAACCCUGUGa....................... len:21 al:8
......................................................UUGAACuCUGAAACCCUGU......................... len:19 al:1
......................................................UUGAACACUGAAACCCcGUGGU...................... len:22 al:1
......................................................UUGAACACUGAAACCCUGUGGUAa.................... len:24 al:2
......................................................UUGAACACUGAAgCCCUGUGG....................... len:21 al:1
......................................................UUGAACACUGAAACCCUGcGGU...................... len:22 al:1
......................................................UUGAACgCUGAAACCCUGUGG....................... len:21 al:2
......................................................UUGAACACUGAAACCCUGUGGU...................... len:22 al:681
......................................................UUGAACACUGAgACCCUGUGG....................... len:21 al:1
......................................................UUGAACACUGAAACCCUGUGu....................... len:21 al:11
......................................................UUGAACACUGAAACCCUaU......................... len:19 al:6
......................................................aUGAACACUGAAACCCUGU......................... len:19 al:1
......................................................UUGAACACUGAAACCCUu.......................... len:18 al:6
......................................................UUGAACACUGAAAaCCUGUGGU...................... len:22 al:1
......................................................UUGAACACUGAAACCCUuU......................... len:19 al:3
......................................................UUGAACACUGgAACCCU........................... len:17 al:2
......................................................UUGAACACUGAAACCCUGUGGg...................... len:22 al:8
......................................................UUGAACACUGAAACCuUGU......................... len:19 al:2
......................................................UUGgACACUGAAACCCUGUGGU...................... len:22 al:1
......................................................UUGAACACUGgAACCCUGUGGU...................... len:22 al:2
......................................................UUGAACACUGAAgCCCUGUGGU...................... len:22 al:2
......................................................UUGAAuACUGAAACCCUGU......................... len:19 al:1
......................................................UUGAACAuUGAAACCCUGUGGU...................... len:22 al:2
......................................................UUGAACACUGAAACCCUa.......................... len:18 al:10
......................................................UUGAACACcGAAACCCUGUGGU...................... len:22 al:1
......................................................UUGAACACUGAAACCCUGUGGUAc.................... len:24 al:1
......................................................UUGAACACUGAgACCCUGUGGU...................... len:22 al:1
......................................................UUGAACACUGAAACCCUGUGGUA..................... len:23 al:23
.......................................................UGAACACUGAAACCCUGg......................... len:18 al:1
.......................................................UGAACACUGAAACCCUGUGGUu..................... len:22 al:2
.......................................................UGAACACUGAAACCCUGU......................... len:18 al:16
.......................................................UGAACACUGAAACCCUGc......................... len:18 al:1
........................................................GAACACUGAAACCCUGU......................... len:17 al:1