Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_1732:76482-76574 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_11004.ps.pdf
Locus Name: Cluster_11004
CCAAAUUAUGCACAGGACCGAUUUAUGCAGAAAGUAAUAGUUCAUUUACUGAGCUAUUGCUGUCUGCACAAUUUGGUCCUAUGCAUUCUGACC
.......(((((.((((((((.((.((((((.((((((((((((.....)))))))))))).)))))).)).)))))))).)))))....... (-44.00)
.CAAAUUAUGCACAGGACCGA........................................................................ len:20 al:2
.CAAAUUAUGCACAGGACCa......................................................................... len:19 al:1
.CAAAUUAUGCACAGGACCaAU....................................................................... len:21 al:1
.CAAAUUAUGCACAGGACCG......................................................................... len:19 al:1
..AAAUUAUGCACAGGACCaAU....................................................................... len:20 al:4
...AAUUAUGCACAGGACCGAU....................................................................... len:19 al:18
...AAUUAUGCACAGGACCG......................................................................... len:17 al:1
...AAUUAUGCgCAGGACCGAU....................................................................... len:19 al:1
...AAUUAUGCACAGGACCGAc....................................................................... len:19 al:1
...AAUUAUGCACAGGACCGA........................................................................ len:18 al:1
...AAUUAUGCACAGGACCaA........................................................................ len:18 al:1
...AAUUAUGCACAGGACCaAU....................................................................... len:19 al:21
....AUUAUGCACAGGACCaAU....................................................................... len:18 al:15
....AUUAUGCACAGGACCGAU....................................................................... len:18 al:4
....................AUUUgUGCAGAAAGUAAUAGUUCA................................................. len:24 al:11
....................AUUUgUGCAGAAAGUAAUAGUUC.................................................. len:23 al:8
....................AUUUgUGCAGAAAGUAAUAGU.................................................... len:21 al:1
....................AUUUAUGCAGAgAGUAAUAGUUC.................................................. len:23 al:1
....................AUUUAUGCAGAAAGUAAUAaUUCA................................................. len:24 al:1
.....................UUUAUGCAGAAAGcAAUAGUUC.................................................. len:22 al:1
.....................UUUAUGCAGAAAGUAAUAGUUCAU................................................ len:24 al:62
.....................UUUAUGCAGAAAGUgAUAGUU................................................... len:21 al:2
.....................UUUAUGCAGAAAGUAAUAGUUuA................................................. len:23 al:1
.....................UUUAUGCAGAAAGUAAUAGUU................................................... len:21 al:29
.....................UUUgUGCAGAAAGUAAUA...................................................... len:18 al:1
.....................UUUAUGCAGAAAGUAAUAGUc................................................... len:21 al:2
.....................UUUAUGCAGAAAGUAAUA...................................................... len:18 al:1
.....................UUUAUGCAGgAAGUAAUAGUUCAU................................................ len:24 al:1
.....................UUUAcGCAGAAAGUAAUAGUUC.................................................. len:22 al:2
.....................UUUAUGCAGgAAGUAAUAGUUCA................................................. len:23 al:2
.....................UUUgUGCAGAAAGUAAUAGUU................................................... len:21 al:9
.....................UUUAUGCAGAAgGUAAUAGUUCAU................................................ len:24 al:5
.....................UUUAUGCgGAAAGUAAUAGUUCA................................................. len:23 al:3
.....................UUUAUGCAGAAAGUAAUAGUUC.................................................. len:22 al:83
.....................UUUAcGCAGAAAGUAAUAGUU................................................... len:21 al:1
.....................UUUgUGCAGAAAGUAAUAGUUC.................................................. len:22 al:24
.....................UUUAUGCAGAgAGUAAUAGUUCA................................................. len:23 al:28
.....................UUUAUGCuGAAAGUAAUAGU.................................................... len:20 al:1
.....................UUUAUGuAGAAAGUAAUAGU.................................................... len:20 al:1
.....................UUUAUGCAGAAAGUAAUAGUUCAUc............................................... len:25 al:1
.....................UUUAUGCAGAAAGgAAUAGUUCAU................................................ len:24 al:1
.....................UUUAUGCAGAAAGUAAUAGUcCA................................................. len:23 al:1
.....................UcUAUGCAGAAAGUAAUAGUUCAU................................................ len:24 al:1
.....................UUUAUGCAGAAAGUAAUAGUUCAUU............................................... len:25 al:15
.....................UUUAUGCAGAAAGUAAUAGUUa.................................................. len:22 al:1
.....................UUUAUGCAGAAAGUAAUAGUcCAU................................................ len:24 al:1
.....................UUUAUGCAGAAAGUAgUAGUUCA................................................. len:23 al:1
.....................cUUAUGCAGAAAGUAAUAGUU................................................... len:21 al:1
.....................UUUgUGCAGAAAGUAAUAGU.................................................... len:20 al:27
.....................UUUAUGCAGAAAGUAAUAGUUCA................................................. len:23 al:210
.....................UUUAUGCAGAAAGUAAUAGU.................................................... len:20 al:12
.....................UUUAUGCAGAgAGUAAUAG..................................................... len:19 al:1
.....................UUUAUGCAGAAAGUAAUAGUUu.................................................. len:22 al:5
.....................UUUAUGCAGAAAGUAuUAGUU................................................... len:21 al:1
.....................UUUAUGCAGAAAGUAAUAGUUCg................................................. len:23 al:8
.....................UUUAUGCAGAAgGUAAUAGUUC.................................................. len:22 al:6
.....................UUUAUGCAGAAAGUAAUAGcUCA................................................. len:23 al:1
.....................UUUgUGCAGAAAGUAAUAGUUCA................................................. len:23 al:71
.....................UUUAUGCAGAAAGUgAUAGUUCA................................................. len:23 al:2
.....................UUUgUGCAGAAAGUAAU....................................................... len:17 al:3
.....................UUUAUGCAGAAAGUAAU....................................................... len:17 al:1
.....................UUUAUGCAGAAAGUAAUcGUUCA................................................. len:23 al:1
.....................UUUAUGCAGAAAGUAAUAGUUCAc................................................ len:24 al:6
.....................UUUgUGCAGAAAGUAAUAGUUCAUU............................................... len:25 al:8
.....................cUUAUGCAGAAAGUAAUAGUUC.................................................. len:22 al:2
.....................UUUAUGCAGAAAGcAAUAGUUCA................................................. len:23 al:1
.....................UUUAUcCAGAAAGUAAUAGUUC.................................................. len:22 al:1
.....................UcUAUGCAGAAAGUAAUAGUUCA................................................. len:23 al:1
.....................UUUAUGCAGAAAGUAAUAGUUCAa................................................ len:24 al:1
.....................UUUAUGCAGAAAGUAgUAGUUC.................................................. len:22 al:1
.....................UUUAUGCAGAAAGUAAUAGUUCu................................................. len:23 al:6
.....................UUUgUGCAGAAAGUAAUAGUUCAU................................................ len:24 al:18
.....................UUUAUGCAGAgAGUAAUAGUUC.................................................. len:22 al:7
......................cUAUGCAGAAAGUAAUAGUUCA................................................. len:22 al:2
......................UUAUGCAGAAAGUAgUAGUUC.................................................. len:21 al:1
......................UUgUGCAGAAAGUAAUAGUUCAU................................................ len:23 al:16
......................UUAUGCuGAAAGUAAUAGUUC.................................................. len:21 al:1
......................UUAUGCgGAAAGUAAUAGUUCA................................................. len:22 al:5
......................UUAUGCAGAAAGUAAUAGUUCc................................................. len:22 al:1
......................UUAUGCAGAAAGUAAUAGa.................................................... len:19 al:1
......................aUAUGCAGAAAGUAAUAGU.................................................... len:19 al:1
......................UUAUGCAGAAAGUAAUAGUaCAUU............................................... len:24 al:1
......................UUAUGCgGAAAGUAAUAGUUC.................................................. len:21 al:2
......................UUAUGCgGAAAGUAAUAGUUCAU................................................ len:23 al:1
......................UUAUGCAGAAAGUAAUAGUUaAU................................................ len:23 al:7
......................UUAUGCAGAAAGUAAUAGc.................................................... len:19 al:8
......................UUAUGCAGAAAGUAAUAGUUCAUaU.............................................. len:25 al:1
......................UUAcGCAGAAAGUAAUAGUU................................................... len:20 al:2
......................UUgUGCAGAAAGUAAUAG..................................................... len:18 al:1
......................UUAUGCAGAAAGUAAUAGUUCu................................................. len:22 al:4
......................UUAUGCAGAgAGUAAUAGU.................................................... len:19 al:1
......................UUAUGCAGAAAGUAAUAGUcC.................................................. len:21 al:1
......................UUAUGCAGAAAGUAAUAGUUa.................................................. len:21 al:4
......................UUAcGCAGAAAGUAAUAGUUC.................................................. len:21 al:2
......................UUgUGCAGAAAGUAAUAGUUCAUU............................................... len:24 al:2
......................UUcUGCAGAAAGUAAUAGUUC.................................................. len:21 al:1
......................cUAUGCAGAAAGUAAUAGUUC.................................................. len:21 al:2
......................UUAUGCAGAAAGUAAUAGUUCAc................................................ len:23 al:3
......................aUAUGCAGAAAGUAAUAGUUCAU................................................ len:23 al:1
......................UaAUGCAGAAAGUAAUAGUUC.................................................. len:21 al:1
......................UUgUGCAGAAAGUAAUAGUUCA................................................. len:22 al:219
......................UUAUGCAGAAAGUAAUAGUUu.................................................. len:21 al:30
......................UUAUGCAGAAAGUAAUAGU.................................................... len:19 al:78
......................UUAUGCAGAAAGcAAUAGUUC.................................................. len:21 al:1
......................UUAUGCAGAAAGUAAUAGUUuA................................................. len:22 al:2
......................UUAUGCAGAAAGUAAUAGUUCAUU............................................... len:24 al:45
......................UUAUGCAGAgAGUAAUAGUUCAUU............................................... len:24 al:7
......................UUAUGCAGAAAGUAAcAGU.................................................... len:19 al:1
......................UUAUGCAGAAgGUAAUAGUUCAU................................................ len:23 al:1
......................UUAUGCAGAAAGUAAUAGUUCgUU............................................... len:24 al:1
......................UUAUGCAGAAAGUAAUAGUUCAa................................................ len:23 al:5
......................UUAUGCAGAgAGUAAUAGUUCA................................................. len:22 al:48
......................UUAUGCAGAAAGUAAUAGUUC.................................................. len:21 al:264
......................UUAUGCAGAAAGUAgU....................................................... len:16 al:1
......................UUAUGCAGAAAGUAAUAGUUCAUUUu............................................. len:26 al:1
......................UUAUGCAGAAAGUAAUAGUUCAU................................................ len:23 al:40
......................UUAUGCAGAAAGUAAUAGcUCA................................................. len:22 al:6
......................UUAUGCAGAAAGUAAUAGUcCA................................................. len:22 al:1
......................UUAUGCcGAAAGUAAUAGUUC.................................................. len:21 al:1
......................UUAUGCAGAgAGUAAUAGUUC.................................................. len:21 al:22
......................UUgUGCAGAAAGUAAUAGUU................................................... len:20 al:12
......................UUAUGCAGAAAGUAAUAGUUCAUc............................................... len:24 al:3
......................UUAUGCAGgAAGUAAUAGUUCAUU............................................... len:24 al:2
......................UUAcGCAGAAAGUAAUAGU.................................................... len:19 al:1
......................UUAUGCAGAAAGUAAUAGUcCAUU............................................... len:24 al:1
......................UUAaGCAGAAAGUAAUAGUUCA................................................. len:22 al:1
......................UUAUGCAGAAAGUAAUAGUUCgU................................................ len:23 al:1
......................UUAUGCAGAAAGUAAUAGUUCg................................................. len:22 al:9
......................UUAUGuAGAAAGUAAUAGUUCAUU............................................... len:24 al:3
......................UUAcGCAGAAAGUAAUAGUUCA................................................. len:22 al:2
......................UUAUGCAGAAAGUAAUgGUUCA................................................. len:22 al:1
......................UUgUGCAGAAAGUAAUAGUUC.................................................. len:21 al:34
......................UUgUGCAGAAAGUAAUAGU.................................................... len:19 al:30
......................UUAUGCAGAAAGUAAUAGUUCA................................................. len:22 al:520
......................UUAUGCAGgAAGUAAUAGUUCA................................................. len:22 al:1
......................UUAUGCAGAAAGUAAUuGUUCA................................................. len:22 al:5
......................UUAUGCAGAAAGUAAUAGUc................................................... len:20 al:2
......................UUAUGCAGAAAGUAAU....................................................... len:16 al:3
......................UUAUGCAGAAAGUAAUAGUU................................................... len:20 al:46
......................UUAUGCAGAAAGUAAUAG..................................................... len:18 al:4
......................UUAUGCAGAAAGUgAUAGU.................................................... len:19 al:1
......................UUAUGCAGAgAGUAAUAGUU................................................... len:20 al:9
.......................UAUGCAGAAAGUAAUAGUUCAUU............................................... len:23 al:1
.......................UAUGCAGAAAGUAAUAGUUC.................................................. len:20 al:4
.......................UAUGCAGAAAGUAAUAGUU................................................... len:19 al:2
.......................UAUGCAGAgAGUAAUAGUUCA................................................. len:21 al:2
.......................UAUGCAGAAAGUAAUgGUUCA................................................. len:21 al:1
.......................UAUGCAGAAAGUAAUAGUUCA................................................. len:21 al:8
.......................UAUGCgGAAAGUAAUAGUUCA................................................. len:21 al:1
.......................UgUGCAGAAAGUAAUAGUUCA................................................. len:21 al:1
.......................UgUGCAGAAAGUAAUAGU.................................................... len:18 al:1
........................AUGCAGAAAGUAAUAGUU................................................... len:18 al:1
........................AUGCAGAAAGUAAUAGUUCA................................................. len:20 al:4
........................gUGCAGAAAGUAAUAGUUC.................................................. len:19 al:2
..........................GCAGAAAGUAAUAGUUCA................................................. len:18 al:1
..........................GCAGAAAGUAAUAGUUCAUaU.............................................. len:21 al:1
...........................CAGAgAGUAAUAGUUCAU................................................ len:18 al:3
..........................................CAUUUACUGAGCUAUUGCUGUCUGCACAAU..................... len:30 al:9
..........................................CAUUUACUGAGCUAUUGCUGUCcGCACAAUU.................... len:31 al:1
..........................................CAUUUACUGAGCUAUUGCUGUCUGCA......................... len:26 al:3
..........................................CAUUUACUGAGCUAUUGCUaUCUGCACAAUU.................... len:31 al:1
..........................................CAUUUACUGgGCUAUUGCUGUCUGCACAAUU.................... len:31 al:1
..........................................CAUUUACUGAGCUAUUGCUGUCUGCACAA...................... len:29 al:1
..........................................CAUUUACUGAGCUgUUGCUGUCUGCAC........................ len:27 al:1
..........................................CAUUUACUGAGCUAUUGCUGcCUGCACAAUU.................... len:31 al:1
..........................................CAUUUACUGAGCUAUUGCUGUCUGCACAgU..................... len:30 al:1
..........................................CAUUUACUGAGCUAUUGCUGUCUGCACAAc..................... len:30 al:1
..........................................CAUUUACUGAGCUAUUGCUGUCUGCACu....................... len:28 al:1
..........................................CAUUUACUGAGCUAUUGCUGUCUGCgCAAUU.................... len:31 al:1
..........................................CAUUUACUGAGCUAUUGCUGUCUGCACAAUc.................... len:31 al:3
..........................................CAUUUACUGAGCUAUUGCUGUCUGCACAAUU.................... len:31 al:76
..........................................CAUUUACUGAGCUAUUGCUGUCUGCACAgUU.................... len:31 al:1
..........................................CAUUUACUGAGCUAUUGCUGUCUGCACA....................... len:28 al:3
..........................................CAUUUACUGAGCUAUUGCUGUCUGCAC........................ len:27 al:9
...........................................AUUUACUGAGCUAUUGCUGUCUGCACAAUc.................... len:30 al:5
...........................................AUUUACUGAGCUAUUGCUGUCUGCcCAAUUU................... len:31 al:1
...........................................AUUUACUGAGCUAUUGCUGUCUGCACAAUUc................... len:31 al:1
...........................................AUUUACUGAGCUAUUGCUGUCUGCACAAUU.................... len:30 al:66
...........................................AUUUACUGAGCUAUUGCUGUCUGCAC........................ len:26 al:7
...........................................AUUUACUGAGCUAUUGCUGUCUGCACAAU..................... len:29 al:4
...........................................AUUUACUGAGCUAUUGCUGUCUGCACAAUUU................... len:31 al:9
...........................................AUUUACUGAGCUAUUGCUGUCUGCACA....................... len:27 al:4
...........................................AUUUACUGAGCUAUUGCUGUCUGCA......................... len:25 al:1
...........................................cUUUACUGAGCUAUUGCUGUCUGCACAAUU.................... len:30 al:1
............................................UUUACUGAGCUAUUGCUGUCUGCACAgU..................... len:28 al:1
............................................UUUACUGAGCUAUUGCUGUCUGCACgAUU.................... len:29 al:1
............................................UUUACUGAGCUAUUGCUGUCUGCACgAUUU................... len:30 al:1
............................................UUUACUGAGCUAUUaCUGUCUGCACAAUU.................... len:29 al:1
............................................UUUACUGAGCUAUUGCUGUCUGCACAAUU.................... len:29 al:35
............................................UUUACUGAGCUAUUGCUGUCUGCACAAc..................... len:28 al:1
............................................UUUACUGAGCUAUUGCUGUCUGCACAuU..................... len:28 al:2
............................................UUUACUGAGCUAUUGCUGUCUGCACAAUg.................... len:29 al:1
............................................aUUACUGAGCUAUUGCUGUCUGCACAAUUU................... len:30 al:2
............................................UUUACUGgGCUAUUGCUGUCUGCACAAUU.................... len:29 al:2
............................................UUUACUGAGCUAUUGCUGUCUGCACAAUUc................... len:30 al:1
............................................UUUACUGAGCUAUUGCUGUCUGCAa........................ len:25 al:2
............................................UUUACUGAGCUAUUGCUGUCUGCACAAUUU................... len:30 al:9
............................................UUUACUGAGCUAUUGCUGUCUGCACu....................... len:26 al:1
............................................UUUACUGAGCUAUUGCUGUCUGCACAAUc.................... len:29 al:2
............................................UUUACUGAGCUAUcGCUGUCUGCACAAUU.................... len:29 al:2
............................................UUUACUGAGCUAUUGCUGUCUGCACAAUUUG.................. len:31 al:1
............................................UUUACUGAGCUAUUGCUGUCUGCACAAU..................... len:28 al:19
............................................UUUACUGAGCUAUUGCUGUCUGCACA....................... len:26 al:1
.............................................UUACUGAGCcAUUGCUGUCUGCAC........................ len:24 al:1
.............................................UUACUGAGCUAUUGCUGUCUGCACAAU..................... len:27 al:5
.............................................UUACUGAGCUAUUGCUGUCUGCACAAc..................... len:27 al:2
.............................................UUACUGAGCUAUUGCUGUCUGCACc....................... len:25 al:1
.............................................UUACUGAGCUAUUGCUGUCUGCACAAUU.................... len:28 al:2
..............................................UACUGAGCUAUUGCUGUCUGCACc....................... len:24 al:1
..............................................UACUGAuCUAUUGCUGUCUGCACAAU..................... len:26 al:2
..............................................UACUGAGCUAUUGCUGUCUGCACAAU..................... len:26 al:24
..............................................UACUGAGCUAUUGCUGUCUGCACAAUU.................... len:27 al:3
..............................................UACUGAGCUAUUGCUGUCUGCACu....................... len:24 al:7
..............................................UACUGAGCUAUUGCUGUCUGCACA....................... len:24 al:1
..............................................UACUGAGCUAUUGCUGUCcGCACAAU..................... len:26 al:2
...............................................ACUGAGCUAUUGCUGUCUGCACAAUU.................... len:26 al:3
.................................................UGAGCUAUUGCUGUCUGCACAAU..................... len:23 al:2
.................................................UGAGCUAUUGCUGUCUGCACAu...................... len:22 al:3
.................................................UGAGCUAUUGCUGUCUGCACAc...................... len:22 al:1
..................................................GAGCUAUUGCUGUCUGCACAgU..................... len:22 al:1
...................................................AGCUAUUGCUGUCUGCACAAU..................... len:21 al:25
...................................................AGCUAUUGCUGUCUGCAC........................ len:18 al:6
...................................................AGCUAUUGCUGUCUGCACAA...................... len:20 al:1
...................................................AGCUAUUGCUGUCUGCACAAUUUG.................. len:24 al:2
...................................................AGCUAUUGCUGUCUGCACAgUU.................... len:22 al:4
...................................................AGCUAUUGCUGUCUGCACAAUUc................... len:23 al:1
...................................................AGCUAUUGCUGUCUGCACAAUc.................... len:22 al:4
...................................................AGCUAUUGCUGUCUGCACAAUa.................... len:22 al:9
...................................................AGCUAUUGCUGUCUGCACAAc..................... len:21 al:2
...................................................AGCUAUUGCUGUCUGCACAAUU.................... len:22 al:108
...................................................AGCUAUUGCUGUCUGCgC........................ len:18 al:1
...................................................AGCUAUUGCUGUCUGCACAAUUUu.................. len:24 al:5
...................................................AGCUAUUGCUGUCUGCACAg...................... len:20 al:2
...................................................AGCUAUUGCUGUCUGCACAAUUU................... len:23 al:14
....................................................GCUAUUGCUGUCUGCACAAU..................... len:20 al:2
....................................................GCUAUUGCUGUCUGCACAAc..................... len:20 al:1
....................................................GCUAUUGCUGUCUGCACAAUUUGu................. len:24 al:1
....................................................GCUAUUGCUGUCUGCACAgUU.................... len:21 al:1
....................................................GCUAUUGCUGUCUGCACAAUUUG.................. len:23 al:1
.....................................................CUAUUGCUGUCUGCACAAUUUa.................. len:22 al:3
......................................................UAUUGCUGUCUGCACAAU..................... len:18 al:1
...........................................................................GUCCUAUGCAUUCUGACC len:18 al:3
...........................................................................GUCCUAUGCAUUCUGACu len:18 al:1