Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_1429:47235-47326 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/E-Peve/output/08-Peve-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_10059.ps.pdf
Locus Name: Cluster_10059
UGUUUGCGACACUUAUUGUUUGCAUCACUAAAAUUUCUCAAUGAUUCAAUUGAGAAAUUGAAGUGAUGCUAACAAUAACUGUCAAAAUAAUU
(((((..((((.((((((((.((((((((..(((((((((((......)))))))))))..)))))))).)))))))).)))).)))))... (-40.20)
..................UUUGCAUCACUAAAAUUUCUC..................................................... len:21 al:66
..................UUcGCAUCACUAAAAUUUCUCA.................................................... len:22 al:2
..................UUUGCAUCACUAAAAUUUCc...................................................... len:20 al:2
..................UUUGCAUCACUAAAAUUUCUCAAUG................................................. len:25 al:1
..................cUUGCAUCACUAAAAUUUCUCAAU.................................................. len:24 al:2
..................UUUGCAUCACUAAAAUUUCUCAAUc................................................. len:25 al:2
..................UUUGCAUCACUAAAAUUUCUCAA................................................... len:23 al:6
..................UUUGCAUCACUAAAAUUUCUa..................................................... len:21 al:1
..................UUUGCAUCACUAAAAUUUCUCu.................................................... len:22 al:50
..................UUUGCAUCACUAAAAUUUCUCAc................................................... len:23 al:2
..................UUUGCAUCACUAAAAUUUCUCc.................................................... len:22 al:8
..................UUUGCAUCACUAAAAUUUCUCgAU.................................................. len:24 al:1
..................UUUGCAUCACUAAAAUUUCUCAAa.................................................. len:24 al:7
..................UUUGCAUCACUAAAAUUUCUCcAU.................................................. len:24 al:1
..................UUUGCgUCACUAAAAUUUCUCA.................................................... len:22 al:2
..................UUUGCAUCACUAAAAUUUCUCAAc.................................................. len:24 al:17
..................UUUGCAUCACUAAAAUUcCUC..................................................... len:21 al:1
..................UUUGCAUCACUgAAAUUUCUCAAU.................................................. len:24 al:1
..................UUUGCAUCACUAAAAUUUCU...................................................... len:20 al:9
..................UUUGCAUCACcAAAAUUUCUC..................................................... len:21 al:1
..................UUUGCAUCACUAAAAcUUCUCA.................................................... len:22 al:2
..................UUUGCAUCgCUAAAAUUUCUCAAU.................................................. len:24 al:3
..................UUUGCAUCACUAAAAUUUCUCAu................................................... len:23 al:33
..................UUUGCAUCACUAAAAUUUCUCAAUa................................................. len:25 al:1
..................UUUGCAUCACUAAAAcUUCUCAAU.................................................. len:24 al:1
..................UUUGCAUCACUAAAAUUUC....................................................... len:19 al:2
..................UUUGCAUCACUAAAAUUUCcCAAU.................................................. len:24 al:2
..................UUUGCAUCACUAAAAUUUCUu..................................................... len:21 al:8
..................cUUGCAUCACUAAAAUUUCUCAA................................................... len:23 al:1
..................UUUGCAUCACUAAAAUUUCUCAgU.................................................. len:24 al:3
..................UUUGCAUCACUAAAAUUUCUCA.................................................... len:22 al:126
..................UUUGCAUCACUAAAAUUUCUCAuU.................................................. len:24 al:11
..................UUUGCAUCACUAAAAUUUCUCAAUu................................................. len:25 al:13
..................UUUGCAUCACUAAAAUUUCUCAAU.................................................. len:24 al:202
..................UUcGCAUCACUAAAAUUUCUC..................................................... len:21 al:1
..................UUUGCAUCACUAAAAUUUCaCAAU.................................................. len:24 al:1
..................UcUGCAUCACUAAAAUUUCUC..................................................... len:21 al:2
...................UUGCAUCACUAAAAUUUCUCAAU.................................................. len:23 al:16
...................UUGCAUCACUAAAAUUUCUCAAc.................................................. len:23 al:4
...................UUGCAUCACUAAAAUUUCU...................................................... len:19 al:3
...................UUGCAUCACUAAAAUUUCUC..................................................... len:20 al:1
...................cUGCAUCACUAAAAUUUCUCAAU.................................................. len:23 al:1
...................UUGCgUCACUAAAAUUUCUCAAU.................................................. len:23 al:1
...................UUGCAUCACUAAAAUUUCUCAAUu................................................. len:24 al:1
....................UGCAUCACUAAAgUUUCUCAAU.................................................. len:22 al:10
....................UGCAUCACUAAAgUUUCUCA.................................................... len:20 al:1
....................UGCAUCgCUAAAAUUUCUC..................................................... len:19 al:3
....................UGCgUCACUAAAAUUUCUCAAU.................................................. len:22 al:29
....................UGCAUCACUAAAAcUUCUCAAU.................................................. len:22 al:17
....................UGCAUCACUAAAAUUUCUu..................................................... len:19 al:6
....................UGCAUCACUAAAAUUUCUCg.................................................... len:20 al:3
....................UGCAUCACUAAgAUUUCUCAAU.................................................. len:22 al:13
....................cGCAUCACUAAAAUUUCU...................................................... len:18 al:1
....................UGCAUCACUAAAAUUUCUCAgU.................................................. len:22 al:27
....................UGCAUCACUAAAAUUUCcCA.................................................... len:20 al:1
....................UGCAUCACUAAAgUUUCUC..................................................... len:19 al:1
....................UGCAUCAgUAAAAUUUCU...................................................... len:18 al:1
....................UGCAUCACUAAAAUUUCUCgAU.................................................. len:22 al:20
....................UGCAUCACUAAAAUUUCUCAAUG................................................. len:23 al:76
....................UGCAUCACUAgAAUUUCUCAAU.................................................. len:22 al:19
....................UGCAUCACUAAAAUUUCUCAA................................................... len:21 al:53
....................UGCAUCACUAAAAUUUCUCAAUc................................................. len:23 al:41
....................UGCAUCACUAAAAUUUCUCAAc.................................................. len:22 al:395
....................UGCAUCACUAAAAUUUCUCAAU.................................................. len:22 al:5660
....................cGCAUCACUAAAAUUUCUCAAU.................................................. len:22 al:35
....................UGCAUCACUAAAAUUUCUCuAU.................................................. len:22 al:3
....................UGCAUCACcAAAAUUUCUCAAU.................................................. len:22 al:5
....................gGCAUCACUAAAAUUUCUCAAU.................................................. len:22 al:5
....................UGCAUCgCUAAAAUUUCUCAAU.................................................. len:22 al:12
....................UGCAUCACUAAAAUUUCUCAg................................................... len:21 al:1
....................UGCAUCACUAAAAUcUCUCAAU.................................................. len:22 al:19
....................UaCAUCACUAAAAUUUCUCAAU.................................................. len:22 al:13
....................UGCAUCACUAAAAUUUCUCAAUuA................................................ len:24 al:1
....................UGCAUCACUcAAAUUUCUCAAUG................................................. len:23 al:1
....................aGCAUCACUAAAAUUUCUCAAU.................................................. len:22 al:18
....................UGuAUCACUAAAAUUUCUCA.................................................... len:20 al:1
....................UGCAUCgCUAAAAUUUCUCA.................................................... len:20 al:2
....................UGCAUCACUAAAAaUUCUCAAU.................................................. len:22 al:1
....................UGCAUCACUAAAAUUUCUCcAU.................................................. len:22 al:1
....................UGCAUCACUAAAAUUUCUCAAUuAUUC............................................. len:27 al:1
....................UGCAUCAuUAAAAUUUCUCAAU.................................................. len:22 al:4
....................UGCAUCACUAAAAUUUCUCu.................................................... len:20 al:2
....................UGCAUCACaAAAAUUUCUCAAU.................................................. len:22 al:1
....................UGCAUCACUAAAAUUUCU...................................................... len:18 al:66
....................UGCAUCACUAAAAUUUCcCAAUG................................................. len:23 al:1
....................UGCAcCACUAAAAUUUCUCAAU.................................................. len:22 al:25
....................UGCAUCACUAAAAUUUCgCAAU.................................................. len:22 al:3
....................cGCAUCACUAAAAUUUCUCA.................................................... len:20 al:2
....................UGCAUCACUAcAAUUUCUCAAU.................................................. len:22 al:1
....................UGCAUCACUAAAAUUUCUCAc................................................... len:21 al:5
....................UGCAUCcCUAAAAUUUCUCAAU.................................................. len:22 al:5
....................UGCAUCACUAAAAUUUCUCAAUGAUU.............................................. len:26 al:1
....................UGCAUCACUAAAAUUUCUC..................................................... len:19 al:189
....................UGCAUCACUAgAAUUUCU...................................................... len:18 al:2
....................UGCAUCACUAAAAUUUCUCAAUGA................................................ len:24 al:2
....................UGCAUCACUAAAAUUUCUuAAU.................................................. len:22 al:2
....................UGCAUCACUAAAAUUUCUCAu................................................... len:21 al:33
....................UGCAUCACUAAAAUUUCUCAAUGAUUCAAUU......................................... len:31 al:2
....................UGCAUCACUAAAAUUUCcC..................................................... len:19 al:2
....................UGCAUCACUAAAAUUUCUCA.................................................... len:20 al:167
....................UGCAUCgCUAAAAUUUCUCAAUG................................................. len:23 al:1
....................UGCAUCACUAAAAUUcCUCAAU.................................................. len:22 al:31
....................UGuAUCACUAAAAUUUCUCAAU.................................................. len:22 al:12
....................UGCAUCACUAAcAUUUCUCAAU.................................................. len:22 al:3
....................UGCAaCACUAAAAUUUCUCAAU.................................................. len:22 al:4
....................UGCAUCACUAAAAUUUCUCAcU.................................................. len:22 al:1
....................UGCAUCACUAAAAUUUCUCAuU.................................................. len:22 al:14
....................UGCAUCACUAAAAUUUCUCAAUGu................................................ len:24 al:2
....................UGCgUCACUAAAAUUUCUC..................................................... len:19 al:1
....................UGCAUCgCUAAAAUUUCU...................................................... len:18 al:1
....................UGCAUCACUAAAAUUUCUCAAUa................................................. len:23 al:42
....................UGCAUCACUAAAAUUUCUCAAUu................................................. len:23 al:612
....................UGCAUCACUAAAAUUUuUCAAU.................................................. len:22 al:1
....................UGCAUCACUAAAAUUUCg...................................................... len:18 al:1
....................UGCAUCACUAAAAUUUCcCAAU.................................................. len:22 al:19
....................UGCAUCACUAAAAUUUCaCAAU.................................................. len:22 al:1
....................UGCAUCAaUAAAAUUUCUCAAU.................................................. len:22 al:2
....................UGCAUCACUAAAAUUUCUCAAg.................................................. len:22 al:12
....................UGCAUCACUAAAAUaUCUCAAU.................................................. len:22 al:1
....................UGCAUCACUcAAAUUUCUCAAU.................................................. len:22 al:2
....................UGCuUCACUAAAAUUUCUCAAU.................................................. len:22 al:2
....................UGCAUCACUAAAAgUUCUCAAU.................................................. len:22 al:1
....................cGCAUCACUAAAAUUUCUC..................................................... len:19 al:4
....................UGCAUuACUAAAAUUUCUCAAU.................................................. len:22 al:1
....................UGCAUCACUgAAAUUUCUCAAU.................................................. len:22 al:5
....................UGCAUCACcAAAAUUUCUCA.................................................... len:20 al:1
....................UGCAUCACUAAAAUUUCUCAAa.................................................. len:22 al:15
....................UGCcUCACUAAAAUUUCUCAAU.................................................. len:22 al:5
....................UGCAaCACUAAAAUUUCUCA.................................................... len:20 al:2
....................UaCAUCACUAAAAUUUCUCA.................................................... len:20 al:1
....................UGCAUCACUAAAAUUaCUCAAU.................................................. len:22 al:1
....................UGCAUCACUAAAAUUUCUCgA................................................... len:21 al:1
.....................GCAUCACUAAAAUUUCUCAAU.................................................. len:21 al:3
.....................GCAUCACUAAAAUUUCUCAA................................................... len:20 al:1
.....................GCAUCACUAAAAUUUCUC..................................................... len:18 al:3
......................CAUCACUAAAAUUUCUCAAU.................................................. len:20 al:2
......................CAUCACUAAAAUUUCUCAAUuA................................................ len:22 al:2
.........................................UGAUUCAAUUGAGAAAUUaAAGUGAUGCUAA.................... len:31 al:2
.................................................UUGAGAAAUUGAAGUGAUG........................ len:19 al:2
.................................................UUGAGAAAUUGAAGUGAUGCU...................... len:21 al:7
.................................................UUGAGAAAUUaAAGUGAUGC....................... len:20 al:4
.................................................UUGAGAAAUUGAAGUGAUGCg...................... len:21 al:1
.................................................UUGAGAAAUUGAAGUGAUGCUA..................... len:22 al:1
.................................................UUGAGAAAUUGAAGUGAUGCa...................... len:21 al:2
.................................................UUGAGAAAUUGAAGUGAcGCUAA.................... len:23 al:2
.................................................UUGAGAAAUUGAAGUGAUGu....................... len:20 al:1
.................................................UUGAGAAAUUaAAGUGAUGCU...................... len:21 al:4
.................................................UUGAGAAAUUGAAGUGAUGCUAA.................... len:23 al:3
.................................................UUGAGAAAUUGAAGUGAUGC....................... len:20 al:1
..................................................UGAGAAAUcGAAGUGAUGC....................... len:19 al:3
..................................................UuAGAAAUUGAAGUGAUGCUA..................... len:21 al:2
..................................................UGAGAAAUUGAAGUGAU......................... len:17 al:5
..................................................UGAGAAAUUGAAGUGAUGCUAAa................... len:23 al:50
..................................................UGAGAAAUUGAAGUGAUGCcAA.................... len:22 al:1
..................................................UGAGAAcUUGAAGUGAUGCU...................... len:20 al:3
..................................................UGAGAAAUUaAAGUGAUGCUA..................... len:21 al:22
..................................................UGgGAAAUUGAAGUGAUGCUA..................... len:21 al:1
..................................................UGAGAAAUUGAgGUGAUGCUAA.................... len:22 al:1
..................................................UGAGAAAUUGAAGUGAUGCc...................... len:20 al:358
..................................................UGAGAAgUUGAAGUGAUGCU...................... len:20 al:10
..................................................UGAGAAAUUGAAGUGAUGCU...................... len:20 al:2424
..................................................UGAGAAAUUGAAGUGAUGuUAA.................... len:22 al:1
..................................................aGAGAAAUUGAAGUGAUGCUA..................... len:21 al:1
..................................................UGAGAAuUUGAAGUGAUGCU...................... len:20 al:2
..................................................UGAGAAAUUGgAGUGAUG........................ len:18 al:5
..................................................UGAGAAAUUGAAGUGAc......................... len:17 al:1
..................................................UGAGAAAUUGAAGUGAUGCa...................... len:20 al:137
..................................................UGAGAAAUUGAAGUGAUGg....................... len:19 al:1
..................................................UGAGAAAUUGAAGUaAUGC....................... len:19 al:1
..................................................UGAGAAAUUGAAGUGAUGCg...................... len:20 al:32
..................................................UGAGAAAUUGAgGUGAUGCU...................... len:20 al:10
..................................................UGAGAAAUUGAcGUGAUGCU...................... len:20 al:1
..................................................UGAGAAAUUGAAGUGAUG........................ len:18 al:174
..................................................UGAGAAAUUGAAGUuAUGCU...................... len:20 al:2
..................................................UGAGAAAUUGAAGUGAcGCU...................... len:20 al:5
..................................................UGAGAAAUUGAuGUGAUGCU...................... len:20 al:1
..................................................UGAGAAAUUGAAGUGAUGCUAACA.................. len:24 al:1
..................................................UGAGAAAUUGAAGUGAUGu....................... len:19 al:136
..................................................UGAGAAAUUGAAGUGAUGCUAAaA.................. len:24 al:3
..................................................UGAGAAAUUGAAGcGAUGC....................... len:19 al:1
..................................................UGAGAAAUUGAcGUGAUGC....................... len:19 al:1
..................................................UGAGAAAUUGAAGUGAUGCUAu.................... len:22 al:722
..................................................UGAGcAAUUGAAGUGAUGCU...................... len:20 al:2
..................................................UGAGAAAUcGAAGUGAUGCU...................... len:20 al:6
..................................................UGAGAAAUUGAAGUGAUGCUu..................... len:21 al:7
..................................................UGAGAAAcUGAAGUGAUGCU...................... len:20 al:1
..................................................UGAGAAgUUGAAGUGAUGCUAA.................... len:22 al:2
..................................................UGAGAAAUUGgAGUGAUGCUA..................... len:21 al:1
..................................................UGAGAAAUUGAAaUGAUGCU...................... len:20 al:3
..................................................UGAGAAAUUGAAGUGAUGCUAAC................... len:23 al:96
..................................................UGAaAAAUUGAAGUGAUGCU...................... len:20 al:1
..................................................UGAGAAAUUaAAGUGAUGCUAAC................... len:23 al:8
..................................................UGAGAAAUUGAAGUGAUa........................ len:18 al:18
..................................................UGAGAAAUUGAAGUGAUGCUuA.................... len:22 al:6
..................................................cGAGAAAUUGAAGUGAUGCU...................... len:20 al:7
..................................................UGAGAAAUUGAAGUGAUGCaA..................... len:21 al:2
..................................................UGAGAAAUUGAAGUGAUGaU...................... len:20 al:15
..................................................UGAGAAAUUaAAGUGAUGC....................... len:19 al:48
..................................................aGAGAAAUUGAAGUGAUGCUAAC................... len:23 al:1
..................................................UGAGAgAUUGAAGUGAUGCUA..................... len:21 al:2
..................................................UGAGAAAUUGAAGUGAcGCUAAC................... len:23 al:2
..................................................UGAGAAAUUGAAGUGAUGCUA..................... len:21 al:266
..................................................UGAGAAAcUGAAGUGAUGCUAA.................... len:22 al:3
..................................................UGAGAAAUUGAAGUGAUGuU...................... len:20 al:2
..................................................UGgGAAAUUGAAGUGAUGCUAAC................... len:23 al:2
..................................................UGAGAAAUUaAAGUGAUGCU...................... len:20 al:223
..................................................UGAGAAAUUGAAGUGAUGCUAACu.................. len:24 al:1
..................................................UGAGAAAUUGAAGUGAUGCUgAC................... len:23 al:1
..................................................UGAGgAAUUGAAGUGAUGCUAA.................... len:22 al:2
..................................................UGAGAgAUUGAAGUGAUGCUAA.................... len:22 al:1
..................................................UGAGgAAUUGAAGUGAUGCU...................... len:20 al:7
..................................................UGAGAAgUUGAAGUGAUG........................ len:18 al:2
..................................................UGAGAAAUUGAAGUGcUGC....................... len:19 al:3
..................................................UGAGAAAUUGAAGUGAcGC....................... len:19 al:2
..................................................UGAGAAAUUGAAGUGAUGCUg..................... len:21 al:4
..................................................UGAGAAAUUaAAGUGAUG........................ len:18 al:10
..................................................aGAGAAAUUGAAGUGAUGCU...................... len:20 al:4
..................................................UGgGAAAUUGAAGUGAUGCU...................... len:20 al:15
..................................................UGAGAAAUUGAAGUGAUGCUc..................... len:21 al:1
..................................................UGAGAAAUUGAAGUGAUaCU...................... len:20 al:3
..................................................UGAGAAAUUGgAGUGAUGCUAAC................... len:23 al:1
..................................................UGAGAAAUUGgAGUGAUGC....................... len:19 al:2
..................................................UGgGAAAUUGAAGUGAUGC....................... len:19 al:4
..................................................UGAGAAAUUaAAGUGAUGCUAA.................... len:22 al:54
..................................................UGAGAAAUUGAAGUGAUGCUgA.................... len:22 al:1
..................................................UGgGAAAUUGAAGUGAUGCUAA.................... len:22 al:2
..................................................UGAGAAAUUGAAGUG........................... len:15 al:2
..................................................UGAGAAAUUGAAGUGAcGCUAA.................... len:22 al:1
..................................................UGAGAAAUUGAAGUGAUGCUAuC................... len:23 al:15
..................................................UGAGAAAUUGAAGUGAUGCUAAu................... len:23 al:692
..................................................UGAGAAAUUGAAGUGAaGC....................... len:19 al:1
..................................................cGAGAAAUUGAAGUGAUGCUAA.................... len:22 al:1
..................................................cGAGAAAUUGAAGUGAUGCUA..................... len:21 al:1
..................................................UGAGAAAUUGAAGUGAUGCcA..................... len:21 al:1
..................................................UGAGAAAUUGAgGUGAUG........................ len:18 al:2
..................................................UGAGAAAUUGAAGUGAaGCUAA.................... len:22 al:2
..................................................cGAGAAAUUGAAGUGAUG........................ len:18 al:1
..................................................UGAGAcAUUGAAGUGAUGCU...................... len:20 al:1
..................................................UGAGAAAUUGAAGUGAUGCUAgC................... len:23 al:1
..................................................UGAGAAAUUGAAGUGAUGCUAc.................... len:22 al:74
..................................................UGAGAAAUUGAAGUGgUGCU...................... len:20 al:15
..................................................UGAGAAAUUGAAGcGAUGCU...................... len:20 al:9
..................................................UGAGAAAUUGAAGUGAUGCUAAg................... len:23 al:35
..................................................UGAGgAAUUGAAGUGAUGC....................... len:19 al:2
..................................................UGAGAAAUgGAAGUGAUGCU...................... len:20 al:1
..................................................UaAGAAAUUGAAGUGAUGCU...................... len:20 al:3
..................................................UGAGAAAUUGAAGcGAUGCUAA.................... len:22 al:1
..................................................UGAGAAAUUGAAGUGAUGCUAg.................... len:22 al:1
..................................................UGAGAAAUUGAAGUGAUGa....................... len:19 al:24
..................................................UGAGAAAUUGAAGcGAUGCUA..................... len:21 al:2
..................................................UGAGAAAUUGgAGUGAUGCUAA.................... len:22 al:1
..................................................UGAGAAAUcGAAGUGAUGCUA..................... len:21 al:2
..................................................UGAGAAAUUGAAGUaAUGCU...................... len:20 al:3
..................................................UGAGAgAUUGAAGUGAUGCU...................... len:20 al:5
..................................................UGAGAAAUUGgAGUGAUGCU...................... len:20 al:10
..................................................UGAGAAAUUGAAGUGAUGC....................... len:19 al:478
..................................................UGAGAAAUUGAAGUGAUGCUAA.................... len:22 al:370
..................................................UGAGAAAUUGAgGUGAUGC....................... len:19 al:2
..................................................UaAGAAAUUGAAGUGAUGCUAA.................... len:22 al:2
..................................................UGAGAAAUUGAgGUGAUGCUA..................... len:21 al:1
...................................................GAGAAAUcGAAGUGAUGCUAA.................... len:21 al:1
...................................................GAGAAAUUGAgGUGAUGCUAAC................... len:22 al:1
...................................................GAGAAAUUGAAGUGAUGCUAAC................... len:22 al:2
...................................................GAGAAAUUGAAGUGAUGCUAAu................... len:22 al:1
...................................................GAGAAAUUGAAGUGAUGCU...................... len:19 al:2
...................................................GAGAAAUUGAAGUGAUGCc...................... len:19 al:1
...................................................GAGAAAUUaAAGUGAUGCUAA.................... len:21 al:1
...................................................GAGAAAUUaAAGUGAUGCU...................... len:19 al:1
....................................................AGAAAUUGAAGUGcUGCUAAC................... len:21 al:1
....................................................AGAAAUUGAAGUGAUGCUAACA.................. len:22 al:3
....................................................AGAAAUUGAAGUGAUGCUAA.................... len:20 al:4
....................................................AGAAAUUGAAGUGAUGCUAAC................... len:21 al:5
.....................................................GAAAUUGAAGUGAUGCUAA.................... len:19 al:1
.....................................................GAAAUUGAAGUGAUG........................ len:15 al:1
......................................................AAAUUGAAGUGAUGCUAA.................... len:18 al:3