tidyverse ggplot2 tibble tidyr readr purrr dplyr stringr forcats lubridate BiocGenerics S4Vectors IRanges GenomeInfoDb GenomicRanges matrixStats MatrixGenerics Biobase SummarizedExperiment DESeq2 igraph psych tidygraph ggraph dynamicTreeCut fastcluster WGCNA limma edgeR reshape2 ggcorrplot corrplot rvest pheatmap Matrix glmnet lattice caret factoextra permute vegan ggfortify genefilter scales