Contents of pair:
CF07-CM02-Zygote_R1_001.fastp-trim.fq.gz CF07-CM02-Zygote_R2_001.fastp-trim.fq.gz

Contents of sample_name: CF07-CM02-Zygote

chr NC_035780.1 (65668440 bp)
chr NC_035781.1 (61752955 bp)
chr NC_035782.1 (77061148 bp)
chr NC_035783.1 (59691872 bp)
chr NC_035784.1 (98698416 bp)
chr NC_035785.1 (51258098 bp)
chr NC_035786.1 (57830854 bp)
chr NC_035787.1 (75944018 bp)
chr NC_035788.1 (104168038 bp)
chr NC_035789.1 (32650045 bp)
chr NC_007175.2 (17244 bp)

Number of paired-end alignments with a unique best hit:	5823983
Mapping efficiency:	11.1%

Sequence pairs with no alignments under any condition:	44526027
Sequence pairs did not map uniquely:	2317020
Sequence pairs which were discarded because genomic sequence could not be extracted:	14

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	1630505	((converted) top strand)
GA/CT/CT:	1307974	(complementary to (converted) top strand)
GA/CT/GA:	1280617	(complementary to (converted) bottom strand)
CT/GA/GA:	1604873	((converted) bottom strand)

Number of paired-end alignments with a unique best hit:	5821698
Mapping efficiency:	11.1%

Sequence pairs with no alignments under any condition:	44528343
Sequence pairs did not map uniquely:	2316989
Sequence pairs which were discarded because genomic sequence could not be extracted:	14

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	1631058	((converted) top strand)
GA/CT/CT:	1308902	(complementary to (converted) top strand)
GA/CT/GA:	1277572	(complementary to (converted) bottom strand)
CT/GA/GA:	1604152	((converted) bottom strand)

Number of paired-end alignments with a unique best hit:	5822975
Mapping efficiency:	11.1%

Sequence pairs with no alignments under any condition:	44523444
Sequence pairs did not map uniquely:	2320611
Sequence pairs which were discarded because genomic sequence could not be extracted:	13

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	1629051	((converted) top strand)
GA/CT/CT:	1308326	(complementary to (converted) top strand)
GA/CT/GA:	1278419	(complementary to (converted) bottom strand)
CT/GA/GA:	1607166	((converted) bottom strand)

Number of paired-end alignments with a unique best hit:	5828671
Mapping efficiency:	11.1%

Sequence pairs with no alignments under any condition:	44518776
Sequence pairs did not map uniquely:	2319583
Sequence pairs which were discarded because genomic sequence could not be extracted:	19

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	1632800	((converted) top strand)
GA/CT/CT:	1310186	(complementary to (converted) top strand)
GA/CT/GA:	1280015	(complementary to (converted) bottom strand)
CT/GA/GA:	1605651	((converted) bottom strand)

All child process successfully finished.CF07-CM02-Zygote_R1_001.fastp-trim.fq.gz.temp.1.gz	CF07-CM02-Zygote_R2_001.fastp-trim.fq.gz.temp.1.gz	CF07-CM02-Zygote_R1_001.fastp-trim.fq.gz.temp.2.gz	CF07-CM02-Zygote_R2_001.fastp-trim.fq.gz.temp.2.gz	CF07-CM02-Zygote_R1_001.fastp-trim.fq.gz.temp.3.gz	CF07-CM02-Zygote_R2_001.fastp-trim.fq.gz.temp.3.gz	CF07-CM02-Zygote_R1_001.fastp-trim.fq.gz.temp.4.gz	CF07-CM02-Zygote_R2_001.fastp-trim.fq.gz.temp.4.gz	

/gscratch/srlab/kdurkin1/kathleen-coral/project/output/02.01-bismark-bowtie2-alignment-SLURM-array/CF07-CM02-Zygote_R1_001.fastp-trim.fq.gz.temp.1.gz_bismark_bt2_pe.bam	/gscratch/srlab/kdurkin1/kathleen-coral/project/output/02.01-bismark-bowtie2-alignment-SLURM-array/CF07-CM02-Zygote_R1_001.fastp-trim.fq.gz.temp.2.gz_bismark_bt2_pe.bam	/gscratch/srlab/kdurkin1/kathleen-coral/project/output/02.01-bismark-bowtie2-alignment-SLURM-array/CF07-CM02-Zygote_R1_001.fastp-trim.fq.gz.temp.3.gz_bismark_bt2_pe.bam	/gscratch/srlab/kdurkin1/kathleen-coral/project/output/02.01-bismark-bowtie2-alignment-SLURM-array/CF07-CM02-Zygote_R1_001.fastp-trim.fq.gz.temp.4.gz_bismark_bt2_pe.bam