Contents of pair:
CF08-CM03-Zygote_R1_001.fastp-trim.fq.gz CF08-CM03-Zygote_R2_001.fastp-trim.fq.gz

Contents of sample_name: CF08-CM03-Zygote

chr NC_035780.1 (65668440 bp)
chr NC_035781.1 (61752955 bp)
chr NC_035782.1 (77061148 bp)
chr NC_035783.1 (59691872 bp)
chr NC_035784.1 (98698416 bp)
chr NC_035785.1 (51258098 bp)
chr NC_035786.1 (57830854 bp)
chr NC_035787.1 (75944018 bp)
chr NC_035788.1 (104168038 bp)
chr NC_035789.1 (32650045 bp)
chr NC_007175.2 (17244 bp)

Number of paired-end alignments with a unique best hit:	6669666
Mapping efficiency:	18.3%

Sequence pairs with no alignments under any condition:	27131380
Sequence pairs did not map uniquely:	2577448
Sequence pairs which were discarded because genomic sequence could not be extracted:	12

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	1975314	((converted) top strand)
GA/CT/CT:	1355273	(complementary to (converted) top strand)
GA/CT/GA:	1356214	(complementary to (converted) bottom strand)
CT/GA/GA:	1982853	((converted) bottom strand)

Number of paired-end alignments with a unique best hit:	6667849
Mapping efficiency:	18.3%

Sequence pairs with no alignments under any condition:	27134820
Sequence pairs did not map uniquely:	2575826
Sequence pairs which were discarded because genomic sequence could not be extracted:	11

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	1974618	((converted) top strand)
GA/CT/CT:	1354240	(complementary to (converted) top strand)
GA/CT/GA:	1357063	(complementary to (converted) bottom strand)
CT/GA/GA:	1981917	((converted) bottom strand)

Number of paired-end alignments with a unique best hit:	6670724
Mapping efficiency:	18.3%

Sequence pairs with no alignments under any condition:	27132651
Sequence pairs did not map uniquely:	2575120
Sequence pairs which were discarded because genomic sequence could not be extracted:	12

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	1974703	((converted) top strand)
GA/CT/CT:	1356094	(complementary to (converted) top strand)
GA/CT/GA:	1358124	(complementary to (converted) bottom strand)
CT/GA/GA:	1981791	((converted) bottom strand)

Number of paired-end alignments with a unique best hit:	6669494
Mapping efficiency:	18.3%

Sequence pairs with no alignments under any condition:	27135061
Sequence pairs did not map uniquely:	2573939
Sequence pairs which were discarded because genomic sequence could not be extracted:	8

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	1976687	((converted) top strand)
GA/CT/CT:	1356186	(complementary to (converted) top strand)
GA/CT/GA:	1355580	(complementary to (converted) bottom strand)
CT/GA/GA:	1981033	((converted) bottom strand)

All child process successfully finished.CF08-CM03-Zygote_R1_001.fastp-trim.fq.gz.temp.1.gz	CF08-CM03-Zygote_R2_001.fastp-trim.fq.gz.temp.1.gz	CF08-CM03-Zygote_R1_001.fastp-trim.fq.gz.temp.2.gz	CF08-CM03-Zygote_R2_001.fastp-trim.fq.gz.temp.2.gz	CF08-CM03-Zygote_R1_001.fastp-trim.fq.gz.temp.3.gz	CF08-CM03-Zygote_R2_001.fastp-trim.fq.gz.temp.3.gz	CF08-CM03-Zygote_R1_001.fastp-trim.fq.gz.temp.4.gz	CF08-CM03-Zygote_R2_001.fastp-trim.fq.gz.temp.4.gz	

/gscratch/srlab/kdurkin1/kathleen-coral/project/output/02.01-bismark-bowtie2-alignment-SLURM-array/CF08-CM03-Zygote_R1_001.fastp-trim.fq.gz.temp.1.gz_bismark_bt2_pe.bam	/gscratch/srlab/kdurkin1/kathleen-coral/project/output/02.01-bismark-bowtie2-alignment-SLURM-array/CF08-CM03-Zygote_R1_001.fastp-trim.fq.gz.temp.2.gz_bismark_bt2_pe.bam	/gscratch/srlab/kdurkin1/kathleen-coral/project/output/02.01-bismark-bowtie2-alignment-SLURM-array/CF08-CM03-Zygote_R1_001.fastp-trim.fq.gz.temp.3.gz_bismark_bt2_pe.bam	/gscratch/srlab/kdurkin1/kathleen-coral/project/output/02.01-bismark-bowtie2-alignment-SLURM-array/CF08-CM03-Zygote_R1_001.fastp-trim.fq.gz.temp.4.gz_bismark_bt2_pe.bam