Contents of pair:
CF06-CM01-Zygote_R1_001.fastp-trim.fq.gz CF06-CM01-Zygote_R2_001.fastp-trim.fq.gz

Contents of sample_name: CF06-CM01-Zygote

chr NC_035780.1 (65668440 bp)
chr NC_035781.1 (61752955 bp)
chr NC_035782.1 (77061148 bp)
chr NC_035783.1 (59691872 bp)
chr NC_035784.1 (98698416 bp)
chr NC_035785.1 (51258098 bp)
chr NC_035786.1 (57830854 bp)
chr NC_035787.1 (75944018 bp)
chr NC_035788.1 (104168038 bp)
chr NC_035789.1 (32650045 bp)
chr NC_007175.2 (17244 bp)

Number of paired-end alignments with a unique best hit:	8604548
Mapping efficiency:	23.4%

Sequence pairs with no alignments under any condition:	25030384
Sequence pairs did not map uniquely:	3199137
Sequence pairs which were discarded because genomic sequence could not be extracted:	13

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	2359407	((converted) top strand)
GA/CT/CT:	1927675	(complementary to (converted) top strand)
GA/CT/GA:	1940226	(complementary to (converted) bottom strand)
CT/GA/GA:	2377227	((converted) bottom strand)

Number of paired-end alignments with a unique best hit:	8611745
Mapping efficiency:	23.4%

Sequence pairs with no alignments under any condition:	25018526
Sequence pairs did not map uniquely:	3203798
Sequence pairs which were discarded because genomic sequence could not be extracted:	12

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	2364389	((converted) top strand)
GA/CT/CT:	1931823	(complementary to (converted) top strand)
GA/CT/GA:	1939682	(complementary to (converted) bottom strand)
CT/GA/GA:	2375839	((converted) bottom strand)

Number of paired-end alignments with a unique best hit:	8606574
Mapping efficiency:	23.4%

Sequence pairs with no alignments under any condition:	25024142
Sequence pairs did not map uniquely:	3203353
Sequence pairs which were discarded because genomic sequence could not be extracted:	15

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	2362352	((converted) top strand)
GA/CT/CT:	1927776	(complementary to (converted) top strand)
GA/CT/GA:	1941257	(complementary to (converted) bottom strand)
CT/GA/GA:	2375174	((converted) bottom strand)

Number of paired-end alignments with a unique best hit:	8610006
Mapping efficiency:	23.4%

Sequence pairs with no alignments under any condition:	25021792
Sequence pairs did not map uniquely:	3202271
Sequence pairs which were discarded because genomic sequence could not be extracted:	21

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	2361394	((converted) top strand)
GA/CT/CT:	1929497	(complementary to (converted) top strand)
GA/CT/GA:	1941202	(complementary to (converted) bottom strand)
CT/GA/GA:	2377892	((converted) bottom strand)

All child process successfully finished.CF06-CM01-Zygote_R1_001.fastp-trim.fq.gz.temp.1.gz	CF06-CM01-Zygote_R2_001.fastp-trim.fq.gz.temp.1.gz	CF06-CM01-Zygote_R1_001.fastp-trim.fq.gz.temp.2.gz	CF06-CM01-Zygote_R2_001.fastp-trim.fq.gz.temp.2.gz	CF06-CM01-Zygote_R1_001.fastp-trim.fq.gz.temp.3.gz	CF06-CM01-Zygote_R2_001.fastp-trim.fq.gz.temp.3.gz	CF06-CM01-Zygote_R1_001.fastp-trim.fq.gz.temp.4.gz	CF06-CM01-Zygote_R2_001.fastp-trim.fq.gz.temp.4.gz	

/gscratch/srlab/kdurkin1/kathleen-coral/project/output/02.01-bismark-bowtie2-alignment-SLURM-array/CF06-CM01-Zygote_R1_001.fastp-trim.fq.gz.temp.1.gz_bismark_bt2_pe.bam	/gscratch/srlab/kdurkin1/kathleen-coral/project/output/02.01-bismark-bowtie2-alignment-SLURM-array/CF06-CM01-Zygote_R1_001.fastp-trim.fq.gz.temp.2.gz_bismark_bt2_pe.bam	/gscratch/srlab/kdurkin1/kathleen-coral/project/output/02.01-bismark-bowtie2-alignment-SLURM-array/CF06-CM01-Zygote_R1_001.fastp-trim.fq.gz.temp.3.gz_bismark_bt2_pe.bam	/gscratch/srlab/kdurkin1/kathleen-coral/project/output/02.01-bismark-bowtie2-alignment-SLURM-array/CF06-CM01-Zygote_R1_001.fastp-trim.fq.gz.temp.4.gz_bismark_bt2_pe.bam