Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.2.1-Pmea-sRNAseq-ShortStack-31bp-fastp-merged-cnidarian_miRBase/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000016:7553282-7553379 plus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.2.1-Pmea-sRNAseq-ShortStack-31bp-fastp-merged-cnidarian_miRBase/ShortStack_out/strucVis/Cluster_4469.ps
Locus Name: Cluster_4469
AGGGAGAAUAUUGUCUGGCAUAAGGUGAGCUGUGGGAACUCUUAUUAUUUAUGAUAUCAGUUCCACCAGCUCACCAAUAUGCCAGAUGAUAAUAUGCA
..(.(...((((((((((((((.(((((((((..((((((..(((((....)))))..))))))..)))))))))..))))))))))))))...).). (-47.40)
AGGGAGAAUAUUGUCUGGCgUA............................................................................ len:22 al:3
AGGGAGAAUAUUGUCUGGCAa............................................................................. len:21 al:2
AGGGAGAAUAUUGUCUGGCAaA............................................................................ len:22 al:2
.GGGAGAAUAUUGUCUGGCAUA............................................................................ len:21 al:8
.GGGAGAAUAUUGUCUGGCgUA............................................................................ len:21 al:6
.GGGAGAAUAUUGUCUGGCAaA............................................................................ len:21 al:1
.GGGAGAAUAUUGUCUGGC............................................................................... len:18 al:1
..GGAGAAUAUUGUCUGGCgU............................................................................. len:19 al:3
..GGAGAAUAUUGUCUGGCgUA............................................................................ len:20 al:6
...GAGAAUAUUGUCUGGCAUA............................................................................ len:19 al:1
...GAGAAUAUUGUCUGGCAaA............................................................................ len:19 al:1
...GAGAAUAUUGUCUGGCgUA............................................................................ len:19 al:6
...GAGAAUAUUGUCUGGCgU............................................................................. len:18 al:2
....AGAAUAUUGUCUGGCgUA............................................................................ len:18 al:3
....AGAAUAUUGUCUGGCAUA............................................................................ len:18 al:1
........UAUUGUCUGGCAUAAGGUGAGCa................................................................... len:23 al:1
..............CUGGCAUAAGGUGAGCUGUGuGA............................................................. len:23 al:1
....................cAAGGUGAGCUGUGGGAACUCUUA...................................................... len:24 al:1
......................AGGUGAGCUGUGGGAACUCcU....................................................... len:21 al:8
......................AGGUGAGCUGUGGGAACgCUU....................................................... len:21 al:9
......................AGGUGAGCUuUGGGAACUCUU....................................................... len:21 al:1
......................AGGUGAGCUGUGGGAACUCg........................................................ len:20 al:10
......................AGGUGAGCUGUGGGAACUCUa....................................................... len:21 al:45
......................AGGUGAGCUGUGGGAACUCUg....................................................... len:21 al:15
......................AGGUGAGCUGUGGGAACUCUUAUc.................................................... len:24 al:3
......................AGGUGAGCUGUGGGAACUCUUAUUA................................................... len:25 al:1
......................AGGUGgGCUGUGGGAACUCUUA...................................................... len:22 al:7
......................gGGUGAGCUGUGGGAACUCUU....................................................... len:21 al:2
......................AGGcGAGCUGUGGGAACUCU........................................................ len:20 al:1
......................AGGUGAGCUGUGGGAACUCUaA...................................................... len:22 al:10
......................AGGcGAGCUGUGGGAACUCUU....................................................... len:21 al:1
......................AGGUGAGCUGUGGGAACUCUUAa..................................................... len:23 al:18
......................AGGUGAGCUGUGGGAACUCcUA...................................................... len:22 al:1
......................AGGUGAGCUGcGGGAACUCUUA...................................................... len:22 al:4
......................AGGUGAGCUGUGGGAACUuU........................................................ len:20 al:2
......................AGGUGAGCcGUGGGAACUCUU....................................................... len:21 al:1
......................AGGUGgGCUGUGGGAACUCUU....................................................... len:21 al:2
......................AGGUGAGCUGUGGGgACUCUUAU..................................................... len:23 al:1
......................AuGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAgCUCUU....................................................... len:21 al:4
......................AGGUGAGCUGUGGGAACUCUUAUUAU.................................................. len:26 al:1
......................AGGUGAGCUGUGGGAA............................................................ len:16 al:1
......................AGGUGAGCUGUGGGgACUCUU....................................................... len:21 al:8
......................AGGUGAGCcGUGGGAACU.......................................................... len:18 al:1
......................AGGUGAGCUGUGGGAACUCUc....................................................... len:21 al:74
......................AGGUGAGCUGUGGGAACUCUUAaUAU.................................................. len:26 al:3
......................AGGUGAGCUGUGGaAACUCUUA...................................................... len:22 al:2
......................AGGUGAGCUGUGGGAACUCUgA...................................................... len:22 al:3
......................AGGUGAGCUGUGGGAACUaUUA...................................................... len:22 al:1
......................AGGUGAGCUGcGGGAACUCUU....................................................... len:21 al:1
......................cGGUGAGCUGUGGGAACUCUU....................................................... len:21 al:5
......................AGGUGAGCUGUGGGAACUCUUAUUu................................................... len:25 al:1
......................AGGUGAGCUGUGGGAACcCUU....................................................... len:21 al:3
......................AGGUGAGCUGUGGGAACcCUUA...................................................... len:22 al:8
......................AGGUGAGCUGUGGGAACUCUUAaUA................................................... len:25 al:6
......................AGGUGAGCUGUGGGAACUC......................................................... len:19 al:17
......................AGGUGAGCUGUGGGAACUCUUAaU.................................................... len:24 al:4
......................AGGUGAGCUGUGGGAACUCUUAc..................................................... len:23 al:9
......................AGGUGAGCUGUGGGgACUCU........................................................ len:20 al:1
......................AGGUaAGCUGUGGGAACU.......................................................... len:18 al:1
......................AGGUGAGCUGUGGGAACUCgUAU..................................................... len:23 al:1
......................AGGUGAGCUGUGGGAACaCUUA...................................................... len:22 al:1
......................gGGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:14
......................AGGUGAGCUGgGGGAACUCUUAUU.................................................... len:24 al:1
......................AGGUGAGCUGUGGGAACUCUcA...................................................... len:22 al:4
......................AGGUGAGCUGUGGGAACUCcUAUU.................................................... len:24 al:1
......................uGGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:6
......................AcGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:1
......................AGGUGAGCaGUGGGAACUCUUA...................................................... len:22 al:2
......................AGGUGAGCUGUGGGAACUCUUc...................................................... len:22 al:4
......................AGGUaAGCUGUGGGAACUCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAACUCUUuU..................................................... len:23 al:2
......................AGuUGAGCUGUGGGAACUCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGaAACUCUU....................................................... len:21 al:1
......................AGGUGAGCUGUGGGAACUCUUAaUAUUU................................................ len:28 al:1
......................AGGUGAGCUGgGGGAACUCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAACUCc........................................................ len:20 al:16
......................AaGUGAGCUGUGGGAACUC......................................................... len:19 al:1
......................AGGUGAGCUGUGGGAACUuUUA...................................................... len:22 al:1
......................AGGcGAGCUGUGGGAACUCUUA...................................................... len:22 al:3
......................AGGUGAGCUaUGGGAACUCUUA...................................................... len:22 al:2
......................AGGUGAGCaGUGGGAACUC......................................................... len:19 al:1
......................cGGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:34
......................AGGUGAGCUGUGGGAACUCUUAUU.................................................... len:24 al:16
......................AGGUGAGCUGUGGGAgCUCUUA...................................................... len:22 al:9
......................AGGUGAGCUGUGGGAACUu......................................................... len:19 al:5
......................cGGUGAGCUGUGGGAACUCU........................................................ len:20 al:3
......................AGGUGAGCUGUGGGAAuUCUUA...................................................... len:22 al:1
......................AaGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:29
......................AGGUGAGCUGUGGGAACa.......................................................... len:18 al:6
......................AGGUGAGCUGUGGGAACUCaU....................................................... len:21 al:16
......................AaGUGAGCUGUGGGAACUCUU....................................................... len:21 al:8
......................AGGUGAGCUGUGGGAACUCgU....................................................... len:21 al:17
......................AGGUGAGCUGUGaGAACUCUUA...................................................... len:22 al:4
......................AGGUGAGCUGUGGGAACUCUUAUa.................................................... len:24 al:48
......................AGGUGAGCUGUGGGAACUaU........................................................ len:20 al:2
......................AGGUGAGCUGUGGGAACgCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUaGGAACUCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAACUCU........................................................ len:20 al:70
......................AGGUGAGCUGUGGGAACUa......................................................... len:19 al:2
......................uGGUGAGCUGUGGGAACUCUU....................................................... len:21 al:4
......................AGGUGAGCUGUGGGAACUCaUA...................................................... len:22 al:4
......................AGGUGAGCUGUGGGAgCU.......................................................... len:18 al:1
......................AGGUGAGCUGUGGGAACUCa........................................................ len:20 al:27
......................AGGUGAGCUGUGGGAACUCUUAU..................................................... len:23 al:59
......................AGGUGAGCcGUGGGAACUCUUA...................................................... len:22 al:6
......................AGGUGAGCUGUGGGgACUCUUA...................................................... len:22 al:8
......................AGGUGAGCUGUGGGAACUCUUAg..................................................... len:23 al:3
......................AGGUGAGCUGUGGGAACUCUUg...................................................... len:22 al:8
......................AGGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:2487
......................AGGUGAGCUGUGGGAACg.......................................................... len:18 al:7
......................AGGUGAGCUGUGGGAACUCUUAUaA................................................... len:25 al:5
......................AGGUGAGCUGUGGGAACU.......................................................... len:18 al:40
......................AGGgGAGCUGUGGGAACUCUU....................................................... len:21 al:1
......................AGGUGAGCUGUGGGAACc.......................................................... len:18 al:10
......................AGGUGAGCUGUGGGAACUCUU....................................................... len:21 al:486
......................AGGUGAGuUGUGGGAACUCUUA...................................................... len:22 al:2
......................AGGUGAGCUGUGGGAACUCUUAUUc................................................... len:25 al:1
......................AGGUGAGCUGUGGGAACUCUUAgU.................................................... len:24 al:1
......................AGGUGAGCUGUGGGAACUCUUu...................................................... len:22 al:16
......................AGGUGAGCUGUuGGAACUCU........................................................ len:20 al:1
.......................GGUGAGCcGUGGGAACUCUUA...................................................... len:21 al:1
.......................GGUGAGCUGUGGGAACUCa........................................................ len:19 al:1
.......................GGUGAGCUGUGGGAACUCUc....................................................... len:20 al:2
.......................GGUGAGCUGUGGGAACUCUa....................................................... len:20 al:3
.......................aGUGAGCUGUGGGAACUCUUA...................................................... len:21 al:1
.......................uGUGAGCUGUGGGAACUCUU....................................................... len:20 al:1
.......................GGUGAGCUGUGGGAACUCUUA...................................................... len:21 al:21
.......................GGUGAGCUGUGGGAACUCU........................................................ len:19 al:3
.......................GGUGAGCUGUGGGAACUC......................................................... len:18 al:1
.......................GGUGAGCUGUGGGAACUCUUAUU.................................................... len:23 al:1
.......................GGUGAGCUGUGGGAACUCUUAUa.................................................... len:23 al:1
.......................GGUGAGCUGUGGGAACUCUU....................................................... len:20 al:1
.......................GGUGAGCUGUGGGAACUa......................................................... len:18 al:1
........................uUGAGCUGUGGGAACUCUU....................................................... len:19 al:1
........................GUGAGCUGUGGGAACUCUa....................................................... len:19 al:1
........................GUGAGCUGUGGGAACUCUUA...................................................... len:20 al:7
.........................UGAGCUGUGGGAACUCUUA...................................................... len:19 al:5
.........................UGAGCUGUGGGAACUCUUAUU.................................................... len:21 al:1
.........................UGAGCUGUGGGAACUCcUAUUA................................................... len:22 al:1
.........................UGAGCUGUGGGgACUCUUA...................................................... len:19 al:1
...........................AGCUGUGGGAACUCUUuU..................................................... len:18 al:1
............................................UUAUUUAUGAUAUCAGUUCCACCAGCUCACC....................... len:31 al:2
............................................UUAUUUAUGAUAUCAGUUCCACa............................... len:23 al:1
............................................UUAUUUAUGAUAUCAGUUCCACCAGCUCA......................... len:29 al:1
........................................................UCAGUUCCACCAGCUCACCAAa.................... len:22 al:14
........................................................UCAGUUCCACCAcCUCACCAAU.................... len:22 al:2
........................................................UCAGUUCCACCAGCUCACCAAcA................... len:23 al:3
........................................................UCAGUUCCACCgGCUCACCAAU.................... len:22 al:2
........................................................UCAGUUCCACCAGCUCACCAAaA................... len:23 al:2
........................................................UCAGUUCCACCAGCUCACCAAc.................... len:22 al:57
........................................................UCAGUUCCACCAGCUCAgCAA..................... len:21 al:4
........................................................UCAGUUCCACCAGCUCAgCAAUA................... len:23 al:2
........................................................UCAGUUCCACCAGCUCACCAg..................... len:21 al:2
........................................................UCAGUUCCACCAGCUCAg........................ len:18 al:1
........................................................UCAGUUCCACCgGCUCACCAAUA................... len:23 al:1
........................................................UCAGUUCCACCAGCUCACuAAU.................... len:22 al:1
........................................................UCAGUUCCACCAGCUCAC........................ len:18 al:1
........................................................aCAGUUCCACCAGCUCACCAA..................... len:21 al:1
........................................................UCAGUUCCACCAGCUCACCuAU.................... len:22 al:4
........................................................UCAGUUCCACCAGCUCACuA...................... len:20 al:2
........................................................UCAGUUuCACCAGCUCACCAAU.................... len:22 al:1
........................................................UCAGUUCCACuAGCUCACCAAU.................... len:22 al:1
........................................................UCAGUUCCACCAGCUCACC....................... len:19 al:17
........................................................UCAGUUCCACCAGCUCACCA...................... len:20 al:47
........................................................cCAGUUCCACCAGCUCACCAAUA................... len:23 al:6
........................................................UCAGUUCCACCuGCUCACCAAU.................... len:22 al:2
........................................................UCAGUUCCACCAGCUCAu........................ len:18 al:1
........................................................UCAGUUCCACCAGCUuACCAAU.................... len:22 al:1
........................................................UCAGUUCCACCAGCUCACCAAUAU.................. len:24 al:12
........................................................UCAGUUCCACCAGCUCACCAAUAc.................. len:24 al:1
........................................................UCAGUUCCACCAGuUCACCAAUA................... len:23 al:1
........................................................aCAGUUCCACCAGCUCACCAAU.................... len:22 al:2
........................................................UCAGUUCCACCAuCUCACCAAU.................... len:22 al:13
........................................................UCAGUUCCACCAGCUCAuCAAUA................... len:23 al:1
........................................................UCgGUUCCACCAGCUCACCAAUA................... len:23 al:3
........................................................UCAGcUCCACCAGCUCACCA...................... len:20 al:1
........................................................UCAGUUCCACCAGCUCACCAAUuU.................. len:24 al:1
........................................................UCAGUUCCACCAGuUCACCA...................... len:20 al:1
........................................................UCAGUUCCACCAGCUCACCAAUAUc................. len:25 al:1
........................................................UCAGUUCCACCAGCUCACu....................... len:19 al:1
........................................................UCAGUUCCACCAuCUCACC....................... len:19 al:1
........................................................UCAGUUCCACCAuCUCACCA...................... len:20 al:3
........................................................cCAGUUCCACCAGCUCACCAAU.................... len:22 al:3
........................................................UCAGUUCCACCAGCUCACaA...................... len:20 al:1
........................................................UCAGUUCCACCAGCcCACCAAU.................... len:22 al:1
........................................................UCAGUUCCACCAGCUCACCAAgA................... len:23 al:1
........................................................aCAGUUCCACCAGCUCACCAAUA................... len:23 al:1
........................................................UCAGUUCCACCAGCUCACCAAUc................... len:23 al:17
........................................................UCAGcUCCACCAGCUCACCAAUA................... len:23 al:1
........................................................UCAGUUCCACCAGCUCACCAAUu................... len:23 al:89
........................................................UCAGUUuCACCAGCUCACCAAUA................... len:23 al:1
........................................................UCAGUUCCACCAGCUCACCAcU.................... len:22 al:1
........................................................UCAGUUCCACCAGCUCACCAAUAa.................. len:24 al:1
........................................................UCAGUUCCACCAGCUCAgC....................... len:19 al:6
........................................................UCAGUUCCACCAGCUCAgCAAU.................... len:22 al:38
........................................................UCAGUUCCACCAGCUCACCAAg.................... len:22 al:8
........................................................UCAGUUCCACCAGCUCAgCA...................... len:20 al:10
........................................................UCAGUUCCACCAGCUCACCAuUA................... len:23 al:2
........................................................UCAGUUCCACCAGCUCACCAgU.................... len:22 al:16
........................................................UCAGaUCCACCAGCUCACCAAUA................... len:23 al:1
........................................................UuAGUUCCACCAGCUCACCAAUA................... len:23 al:1
........................................................UCAGUUCCgCCAGCUCACCAAU.................... len:22 al:1
........................................................UCAGUUCCACCAGCUCACCg...................... len:20 al:12
........................................................UCAGUUCCACCAaCUCACCAAUA................... len:23 al:1
........................................................UCAGUUCCACCAGCUCACCgAU.................... len:22 al:1
........................................................UCAGUUCCACCAGCUCACCAA..................... len:21 al:26
........................................................UCAGUUCCACCAGCUCACa....................... len:19 al:4
........................................................UCAGUUCCACCAGCUCACCAAUA................... len:23 al:283
........................................................UCAGUUCCACCAGCcCACCAAUA................... len:23 al:2
........................................................UCAGUUCCACuAGCUCACC....................... len:19 al:1
........................................................UCAGUUCCACCAGCUCACCAAU.................... len:22 al:371
........................................................UCAGUUCCACCAGCUCACCAAUg................... len:23 al:1
..........................................................AGUUCCACCAGCUCACCAAUA................... len:21 al:2
...........................................................GUUCCACCAGCUCAgCAAU.................... len:19 al:1
............................................................UUCCACCAGCUCACCAAc.................... len:18 al:1
............................................................UUCCACCAGCUCACCAAU.................... len:18 al:1
............................................................UUCCACCAGCUCACCAAUA................... len:19 al:7