89746683 + 0 in total (QC-passed reads + QC-failed reads) 4719707 + 0 secondary 0 + 0 supplementary 0 + 0 duplicates 47731139 + 0 mapped (53.18% : N/A) 85026976 + 0 paired in sequencing 42513488 + 0 read1 42513488 + 0 read2 34672272 + 0 properly paired (40.78% : N/A) 39409622 + 0 with itself and mate mapped 3601810 + 0 singletons (4.24% : N/A) 170552 + 0 with mate mapped to a different chr 96522 + 0 with mate mapped to a different chr (mapQ>=5)