diamond v2.1.8.162 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen
Documentation, support and updates available at http://www.diamondsearch.org
Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)

#CPU threads: 40
Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
Temporary directory: ../output/30.00-Ptua-transcriptome-GOslims
#Target sequences to report alignments for: 1
Opening the database...  [0.105s]
Database: ../../M-multi-species/data/blastdbs/20250620-diamond.dmnd (type: Diamond database, sequences: 573661, letters: 207922125)
Block size = 15000000000
Opening the input file...  [0.063s]
Opening the output file...  [0s]
Loading query sequences...  [2.044s]
Masking queries...  [0.987s]
Algorithm: Double-indexed
Building query histograms...  [1.389s]
Seeking in database...  [0s]
Loading reference sequences...  [0.727s]
Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4.
Building reference seed array...  [0.464s]
Building query seed array...  [0.222s]
Computing hash join...  [0.113s]
Masking low complexity seeds...  [0.02s]
Searching alignments...  [0.316s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4.
Building reference seed array...  [0.239s]
Building query seed array...  [0.148s]
Computing hash join...  [0.081s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.305s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4.
Building reference seed array...  [0.289s]
Building query seed array...  [0.163s]
Computing hash join...  [0.079s]
Masking low complexity seeds...  [0.021s]
Searching alignments...  [0.318s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4.
Building reference seed array...  [0.214s]
Building query seed array...  [0.143s]
Computing hash join...  [0.076s]
Masking low complexity seeds...  [0.021s]
Searching alignments...  [0.308s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4.
Building reference seed array...  [0.217s]
Building query seed array...  [0.124s]
Computing hash join...  [0.076s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.262s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4.
Building reference seed array...  [0.265s]
Building query seed array...  [0.134s]
Computing hash join...  [0.074s]
Masking low complexity seeds...  [0.02s]
Searching alignments...  [0.273s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4.
Building reference seed array...  [0.236s]
Building query seed array...  [0.129s]
Computing hash join...  [0.076s]
Masking low complexity seeds...  [0.022s]
Searching alignments...  [0.282s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4.
Building reference seed array...  [0.214s]
Building query seed array...  [0.137s]
Computing hash join...  [0.071s]
Masking low complexity seeds...  [0.02s]
Searching alignments...  [0.268s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4.
Building reference seed array...  [0.226s]
Building query seed array...  [0.132s]
Computing hash join...  [0.076s]
Masking low complexity seeds...  [0.02s]
Searching alignments...  [0.277s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4.
Building reference seed array...  [0.244s]
Building query seed array...  [0.15s]
Computing hash join...  [0.077s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.29s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4.
Building reference seed array...  [0.273s]
Building query seed array...  [0.145s]
Computing hash join...  [0.079s]
Masking low complexity seeds...  [0.027s]
Searching alignments...  [0.303s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4.
Building reference seed array...  [0.21s]
Building query seed array...  [0.128s]
Computing hash join...  [0.076s]
Masking low complexity seeds...  [0.025s]
Searching alignments...  [0.211s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4.
Building reference seed array...  [0.133s]
Building query seed array...  [0.086s]
Computing hash join...  [0.065s]
Masking low complexity seeds...  [0.015s]
Searching alignments...  [0.189s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4.
Building reference seed array...  [0.162s]
Building query seed array...  [0.093s]
Computing hash join...  [0.067s]
Masking low complexity seeds...  [0.017s]
Searching alignments...  [0.193s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4.
Building reference seed array...  [0.164s]
Building query seed array...  [0.097s]
Computing hash join...  [0.067s]
Masking low complexity seeds...  [0.015s]
Searching alignments...  [0.195s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4.
Building reference seed array...  [0.132s]
Building query seed array...  [0.086s]
Computing hash join...  [0.068s]
Masking low complexity seeds...  [0.017s]
Searching alignments...  [0.257s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4.
Building reference seed array...  [0.227s]
Building query seed array...  [0.132s]
Computing hash join...  [0.076s]
Masking low complexity seeds...  [0.02s]
Searching alignments...  [0.261s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4.
Building reference seed array...  [0.224s]
Building query seed array...  [0.13s]
Computing hash join...  [0.074s]
Masking low complexity seeds...  [0.022s]
Searching alignments...  [0.28s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4.
Building reference seed array...  [0.246s]
Building query seed array...  [0.137s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.022s]
Searching alignments...  [0.298s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4.
Building reference seed array...  [0.223s]
Building query seed array...  [0.137s]
Computing hash join...  [0.075s]
Masking low complexity seeds...  [0.021s]
Searching alignments...  [0.262s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4.
Building reference seed array...  [0.217s]
Building query seed array...  [0.138s]
Computing hash join...  [0.075s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.273s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4.
Building reference seed array...  [0.264s]
Building query seed array...  [0.154s]
Computing hash join...  [0.075s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.255s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4.
Building reference seed array...  [0.248s]
Building query seed array...  [0.127s]
Computing hash join...  [0.074s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.27s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4.
Building reference seed array...  [0.204s]
Building query seed array...  [0.13s]
Computing hash join...  [0.075s]
Masking low complexity seeds...  [0.023s]
Searching alignments...  [0.286s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4.
Building reference seed array...  [0.195s]
Building query seed array...  [0.128s]
Computing hash join...  [0.075s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.247s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4.
Building reference seed array...  [0.251s]
Building query seed array...  [0.137s]
Computing hash join...  [0.077s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.256s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4.
Building reference seed array...  [0.242s]
Building query seed array...  [0.147s]
Computing hash join...  [0.074s]
Masking low complexity seeds...  [0.021s]
Searching alignments...  [0.242s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4.
Building reference seed array...  [0.219s]
Building query seed array...  [0.123s]
Computing hash join...  [0.074s]
Masking low complexity seeds...  [0.02s]
Searching alignments...  [0.259s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4.
Building reference seed array...  [0.227s]
Building query seed array...  [0.136s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.26s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4.
Building reference seed array...  [0.257s]
Building query seed array...  [0.135s]
Computing hash join...  [0.07s]
Masking low complexity seeds...  [0.021s]
Searching alignments...  [0.28s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4.
Building reference seed array...  [0.255s]
Building query seed array...  [0.132s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.264s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4.
Building reference seed array...  [0.211s]
Building query seed array...  [0.148s]
Computing hash join...  [0.079s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.249s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4.
Building reference seed array...  [0.189s]
Building query seed array...  [0.129s]
Computing hash join...  [0.077s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.281s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4.
Building reference seed array...  [0.253s]
Building query seed array...  [0.156s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.021s]
Searching alignments...  [0.288s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4.
Building reference seed array...  [0.273s]
Building query seed array...  [0.153s]
Computing hash join...  [0.077s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.288s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4.
Building reference seed array...  [0.208s]
Building query seed array...  [0.122s]
Computing hash join...  [0.076s]
Masking low complexity seeds...  [0.021s]
Searching alignments...  [0.279s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4.
Building reference seed array...  [0.215s]
Building query seed array...  [0.116s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.023s]
Searching alignments...  [0.251s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4.
Building reference seed array...  [0.252s]
Building query seed array...  [0.142s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.247s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4.
Building reference seed array...  [0.258s]
Building query seed array...  [0.13s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.276s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4.
Building reference seed array...  [0.2s]
Building query seed array...  [0.128s]
Computing hash join...  [0.075s]
Masking low complexity seeds...  [0.02s]
Searching alignments...  [0.249s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4.
Building reference seed array...  [0.214s]
Building query seed array...  [0.132s]
Computing hash join...  [0.077s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.276s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4.
Building reference seed array...  [0.265s]
Building query seed array...  [0.138s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.02s]
Searching alignments...  [0.264s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4.
Building reference seed array...  [0.256s]
Building query seed array...  [0.152s]
Computing hash join...  [0.074s]
Masking low complexity seeds...  [0.02s]
Searching alignments...  [0.29s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4.
Building reference seed array...  [0.206s]
Building query seed array...  [0.121s]
Computing hash join...  [0.075s]
Masking low complexity seeds...  [0.022s]
Searching alignments...  [0.265s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4.
Building reference seed array...  [0.202s]
Building query seed array...  [0.113s]
Computing hash join...  [0.069s]
Masking low complexity seeds...  [0.02s]
Searching alignments...  [0.257s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4.
Building reference seed array...  [0.249s]
Building query seed array...  [0.146s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.252s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4.
Building reference seed array...  [0.265s]
Building query seed array...  [0.142s]
Computing hash join...  [0.074s]
Masking low complexity seeds...  [0.02s]
Searching alignments...  [0.267s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4.
Building reference seed array...  [0.205s]
Building query seed array...  [0.135s]
Computing hash join...  [0.076s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.243s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4.
Building reference seed array...  [0.222s]
Building query seed array...  [0.134s]
Computing hash join...  [0.071s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.269s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4.
Building reference seed array...  [0.231s]
Building query seed array...  [0.122s]
Computing hash join...  [0.074s]
Masking low complexity seeds...  [0.022s]
Searching alignments...  [0.269s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4.
Building reference seed array...  [0.265s]
Building query seed array...  [0.149s]
Computing hash join...  [0.074s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.258s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4.
Building reference seed array...  [0.205s]
Building query seed array...  [0.136s]
Computing hash join...  [0.074s]
Masking low complexity seeds...  [0.021s]
Searching alignments...  [0.255s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4.
Building reference seed array...  [0.219s]
Building query seed array...  [0.132s]
Computing hash join...  [0.081s]
Masking low complexity seeds...  [0.023s]
Searching alignments...  [0.257s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4.
Building reference seed array...  [0.251s]
Building query seed array...  [0.15s]
Computing hash join...  [0.074s]
Masking low complexity seeds...  [0.021s]
Searching alignments...  [0.255s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4.
Building reference seed array...  [0.264s]
Building query seed array...  [0.14s]
Computing hash join...  [0.075s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.281s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4.
Building reference seed array...  [0.225s]
Building query seed array...  [0.13s]
Computing hash join...  [0.076s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.281s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4.
Building reference seed array...  [0.223s]
Building query seed array...  [0.131s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.02s]
Searching alignments...  [0.291s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4.
Building reference seed array...  [0.238s]
Building query seed array...  [0.148s]
Computing hash join...  [0.078s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.256s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4.
Building reference seed array...  [0.272s]
Building query seed array...  [0.141s]
Computing hash join...  [0.075s]
Masking low complexity seeds...  [0.022s]
Searching alignments...  [0.264s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4.
Building reference seed array...  [0.21s]
Building query seed array...  [0.137s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.254s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4.
Building reference seed array...  [0.194s]
Building query seed array...  [0.105s]
Computing hash join...  [0.069s]
Masking low complexity seeds...  [0.028s]
Searching alignments...  [0.258s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4.
Building reference seed array...  [0.235s]
Building query seed array...  [0.136s]
Computing hash join...  [0.074s]
Masking low complexity seeds...  [0.021s]
Searching alignments...  [0.277s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4.
Building reference seed array...  [0.247s]
Building query seed array...  [0.126s]
Computing hash join...  [0.074s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.247s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4.
Building reference seed array...  [0.198s]
Building query seed array...  [0.107s]
Computing hash join...  [0.069s]
Masking low complexity seeds...  [0.017s]
Searching alignments...  [0.246s]
Deallocating memory...  [0s]
Loading trace points...  [0.221s]
Sorting trace points...  [0.037s]
Computing alignments...  [9.584s]
Deallocating buffers...  [0.011s]
Loading trace points...  [0s]
Loading reference sequences...  [0s]
Deallocating buffers...  [0s]
Deallocating queries...  [0.034s]
Loading query sequences...  [0s]
Closing the input file...  [0s]
Closing the output file...  [0.001s]
Closing the database...  [0.005s]
Cleaning up...  [0s]
Total time = 65.318s
Reported 8924 pairwise alignments, 8924 HSPs.
8924 queries aligned.