CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 489728 1931232 20.23 2420960 2 517341 3227657 13.81 3744998 3 403768 3772744 9.67 4176512 4 312451 3117488 9.11 3429939 5 219719 3726333 5.57 3946052 6 172053 2539111 6.35 2711164 7 166740 2387086 6.53 2553826 8 191281 2542642 7.00 2733923 9 192492 2554163 7.01 2746655 10 191909 2486748 7.16 2678657 11 237995 2517485 8.64 2755480 12 289413 2583734 10.07 2873147 13 231688 2552797 8.32 2784485 14 192363 2559768 6.99 2752131 15 191914 2588687 6.90 2780601 16 195413 2575647 7.05 2771060 17 187118 2584894 6.75 2772012 18 189597 2684747 6.60 2874344 19 189181 2625787 6.72 2814968 20 193699 2704336 6.68 2898035 21 196190 2704975 6.76 2901165 22 193745 2717475 6.66 2911220 23 196202 2720867 6.73 2917069 24 193849 2746201 6.59 2940050 25 192428 2700161 6.65 2892589 26 192374 2702820 6.64 2895194 27 191622 2714739 6.59 2906361 28 193844 2735130 6.62 2928974 29 193334 2718285 6.64 2911619 30 191661 2727788 6.56 2919449 31 190288 2714416 6.55 2904704 32 193874 2741182 6.61 2935056 33 192397 2752617 6.53 2945014 34 189924 2736555 6.49 2926479 35 190793 2744651 6.50 2935444 36 190451 2785048 6.40 2975499 37 191296 2747485 6.51 2938781 38 189186 2745707 6.45 2934893 39 191524 2776534 6.45 2968058 40 188708 2745255 6.43 2933963 41 190203 2736039 6.50 2926242 42 186043 2727275 6.39 2913318 43 185575 2713215 6.40 2898790 44 186901 2743309 6.38 2930210 45 185712 2724855 6.38 2910567 46 185570 2697987 6.44 2883557 47 184986 2699054 6.41 2884040 48 185943 2717445 6.40 2903388 49 184715 2674648 6.46 2859363 50 184845 2669233 6.48 2854078 51 181973 2661888 6.40 2843861 52 181907 2657865 6.41 2839772 53 180125 2622711 6.43 2802836 54 178717 2601769 6.43 2780486 55 178171 2594233 6.43 2772404 56 178352 2600248 6.42 2778600 57 177324 2572372 6.45 2749696 58 174922 2544090 6.43 2719012 59 176046 2537093 6.49 2713139 60 175463 2546047 6.45 2721510 61 172896 2485077 6.50 2657973 62 171771 2470102 6.50 2641873 63 170665 2455372 6.50 2626037 64 169021 2430977 6.50 2599998 65 168023 2397805 6.55 2565828 66 166218 2375639 6.54 2541857 67 163989 2355748 6.51 2519737 68 166425 2362340 6.58 2528765 69 163029 2319632 6.57 2482661 70 159779 2282856 6.54 2442635 71 158930 2265227 6.56 2424157 72 157558 2251261 6.54 2408819 73 155153 2208377 6.56 2363530 74 153379 2177209 6.58 2330588 75 153159 2160424 6.62 2313583 76 152571 2145933 6.64 2298504 77 150623 2105300 6.68 2255923 78 147824 2080235 6.63 2228059 79 146926 2048760 6.69 2195686 80 145518 2035667 6.67 2181185 81 144938 2007656 6.73 2152594 82 142657 1971048 6.75 2113705 83 140865 1950467 6.74 2091332 84 140265 1939286 6.74 2079551 85 138105 1894334 6.80 2032439 86 137341 1870246 6.84 2007587 87 134502 1848182 6.78 1982684 88 132950 1822652 6.80 1955602 89 131959 1788614 6.87 1920573 90 130280 1765940 6.87 1896220 91 128855 1736659 6.91 1865514 92 126890 1721947 6.86 1848837 93 125138 1686329 6.91 1811467 94 123152 1654913 6.93 1778065 95 122633 1633381 6.98 1756014 96 119640 1617254 6.89 1736894 97 117469 1580936 6.92 1698405 98 115973 1558438 6.93 1674411 99 114480 1535023 6.94 1649503 100 113655 1515228 6.98 1628883 101 111883 1483231 7.01 1595114 102 110766 1459389 7.05 1570155 103 108769 1434755 7.05 1543524 104 108229 1418763 7.09 1526992 105 105585 1386463 7.08 1492048 106 104080 1358846 7.11 1462926 107 102552 1341757 7.10 1444309 108 101095 1325416 7.09 1426511 109 99893 1292454 7.17 1392347 110 98296 1271479 7.18 1369775 111 96748 1253105 7.17 1349853 112 96027 1233718 7.22 1329745 113 94240 1208446 7.23 1302686 114 92255 1184759 7.22 1277014 115 90774 1163330 7.24 1254104 116 89868 1149599 7.25 1239467 117 88375 1120499 7.31 1208874 118 86488 1099540 7.29 1186028 119 85424 1082847 7.31 1168271 120 84553 1071994 7.31 1156547 121 83214 1044279 7.38 1127493 122 82535 1027980 7.43 1110515 123 80423 1010393 7.37 1090816 124 78400 993976 7.31 1072376 125 77894 969115 7.44 1047009 126 76308 952762 7.42 1029070 127 75157 935405 7.44 1010562 128 74706 922753 7.49 997459 129 74075 903304 7.58 977379 130 72223 881307 7.57 953530 131 70934 868328 7.55 939262 132 69930 853127 7.58 923057 133 68335 831492 7.59 899827 134 67024 817052 7.58 884076 135 66183 802148 7.62 868331 136 65420 785151 7.69 850571 137 63971 769476 7.68 833447 138 63257 754387 7.74 817644 139 61278 741544 7.63 802822 140 60808 730181 7.69 790989 141 58403 708553 7.61 766956 142 56969 694268 7.58 751237 143 55873 683144 7.56 739017 144 55068 671968 7.57 727036 145 53884 654885 7.60 708769 146 53219 644394 7.63 697613 147 52854 637348 7.66 690202 148 53121 629515 7.78 682636 149 53736 617399 8.01 671135 150 49833 609924 7.55 659757 151 44431 564962 7.29 609393 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 663866 5239027 11.25 5902893 2 431455 2081482 17.17 2512937 3 376085 2999918 11.14 3376003 4 229390 2648448 7.97 2877838 5 103425 3474574 2.89 3577999 6 75620 4407298 1.69 4482918 7 69396 2787469 2.43 2856865 8 75661 2801789 2.63 2877450 9 62716 2850810 2.15 2913526 10 105781 2763743 3.69 2869524 11 128039 2799817 4.37 2927856 12 62048 2873262 2.11 2935310 13 53285 2951589 1.77 3004874 14 60266 2941267 2.01 3001533 15 52345 2942931 1.75 2995276 16 73361 2900557 2.47 2973918 17 45092 2964468 1.50 3009560 18 42755 3017465 1.40 3060220 19 42486 3006874 1.39 3049360 20 45936 2958985 1.53 3004921 21 41132 2990508 1.36 3031640 22 38118 3051246 1.23 3089364 23 37099 3050622 1.20 3087721 24 35359 3040657 1.15 3076016 25 35503 3052169 1.15 3087672 26 35529 3029866 1.16 3065395 27 34523 3040124 1.12 3074647 28 35094 3035581 1.14 3070675 29 34795 3031342 1.13 3066137 30 32261 3044479 1.05 3076740 31 32409 3076174 1.04 3108583 32 31913 3058784 1.03 3090697 33 31672 3088558 1.02 3120230 34 31308 3081005 1.01 3112313 35 31239 3097461 1.00 3128700 36 30783 3101098 0.98 3131881 37 30713 3089139 0.98 3119852 38 31506 3067066 1.02 3098572 39 30045 3087968 0.96 3118013 40 29571 3085811 0.95 3115382 41 29333 3074202 0.95 3103535 42 28714 3099597 0.92 3128311 43 28908 3084197 0.93 3113105 44 28585 3065951 0.92 3094536 45 28464 3082755 0.91 3111219 46 28402 3060423 0.92 3088825 47 29539 3042811 0.96 3072350 48 28309 3048869 0.92 3077178 49 28696 3039813 0.94 3068509 50 28257 3016138 0.93 3044395 51 27902 3010897 0.92 3038799 52 28256 2998665 0.93 3026921 53 28154 2974877 0.94 3003031 54 27885 2963322 0.93 2991207 55 28181 2948346 0.95 2976527 56 29548 2925907 1.00 2955455 57 28465 2925854 0.96 2954319 58 28563 2911082 0.97 2939645 59 28552 2863992 0.99 2892544 60 28238 2856752 0.98 2884990 61 28779 2829962 1.01 2858741 62 28645 2783802 1.02 2812447 63 28944 2770962 1.03 2799906 64 29699 2758057 1.07 2787756 65 30544 2734463 1.10 2765007 66 29666 2716016 1.08 2745682 67 29801 2692671 1.09 2722472 68 30268 2653081 1.13 2683349 69 30062 2632127 1.13 2662189 70 30195 2596476 1.15 2626671 71 30123 2559832 1.16 2589955 72 29873 2538439 1.16 2568312 73 30504 2511137 1.20 2541641 74 31390 2485263 1.25 2516653 75 30245 2457192 1.22 2487437 76 30476 2430808 1.24 2461284 77 30791 2393803 1.27 2424594 78 30500 2369021 1.27 2399521 79 30404 2332610 1.29 2363014 80 30265 2293959 1.30 2324224 81 30469 2272855 1.32 2303324 82 30820 2249117 1.35 2279937 83 31384 2206512 1.40 2237896 84 30883 2187917 1.39 2218800 85 30811 2162095 1.41 2192906 86 30635 2115475 1.43 2146110 87 30418 2103257 1.43 2133675 88 30408 2061324 1.45 2091732 89 30755 2031633 1.49 2062388 90 30024 2007640 1.47 2037664 91 30407 1973786 1.52 2004193 92 31145 1936744 1.58 1967889 93 30429 1919218 1.56 1949647 94 30220 1889220 1.57 1919440 95 29940 1856961 1.59 1886901 96 29583 1830899 1.59 1860482 97 29047 1801803 1.59 1830850 98 29440 1772157 1.63 1801597 99 29205 1739849 1.65 1769054 100 29580 1711624 1.70 1741204 101 29899 1682542 1.75 1712441 102 29151 1657679 1.73 1686830 103 28916 1634999 1.74 1663915 104 28853 1602780 1.77 1631633 105 28321 1583184 1.76 1611505 106 27765 1554211 1.76 1581976 107 27767 1526718 1.79 1554485 108 27581 1499324 1.81 1526905 109 27969 1472113 1.86 1500082 110 28037 1446307 1.90 1474344 111 27462 1426352 1.89 1453814 112 27644 1398315 1.94 1425959 113 27159 1375865 1.94 1403024 114 26784 1352523 1.94 1379307 115 26538 1323510 1.97 1350048 116 26447 1298733 2.00 1325180 117 26261 1276002 2.02 1302263 118 26097 1254378 2.04 1280475 119 26337 1227965 2.10 1254302 120 25551 1212061 2.06 1237612 121 25301 1193163 2.08 1218464 122 25201 1170214 2.11 1195415 123 24813 1150658 2.11 1175471 124 24485 1121446 2.14 1145931 125 24385 1101319 2.17 1125704 126 24206 1080794 2.19 1105000 127 23842 1061281 2.20 1085123 128 23995 1039964 2.26 1063959 129 23458 1024813 2.24 1048271 130 23430 1003258 2.28 1026688 131 22751 983273 2.26 1006024 132 22699 966762 2.29 989461 133 22345 943420 2.31 965765 134 22463 927233 2.37 949696 135 21925 910506 2.35 932431 136 21856 892015 2.39 913871 137 21733 873063 2.43 894796 138 21123 859703 2.40 880826 139 21177 842705 2.45 863882 140 20511 822064 2.43 842575 141 19871 808742 2.40 828613 142 19181 788476 2.37 807657 143 19018 773752 2.40 792770 144 18844 758871 2.42 777715 145 18954 747076 2.47 766030 146 18823 734867 2.50 753690 147 18711 724121 2.52 742832 148 18896 713056 2.58 731952 149 19471 698458 2.71 717929 150 20470 705727 2.82 726197 151 27957 642510 4.17 670467 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1867949 5669518 24.78 7537467 2 1761736 7620561 18.78 9382297 3 1290049 7058940 15.45 8348989 4 1120704 6837727 14.08 7958431 5 614613 8104478 7.05 8719091 6 539176 9395297 5.43 9934473 7 473407 10662283 4.25 11135690 8 478352 10357265 4.41 10835617 9 384521 10078460 3.68 10462981 10 368157 9855741 3.60 10223898 11 408998 9707801 4.04 10116799 12 360595 9652315 3.60 10012910 13 341365 9667084 3.41 10008449 14 342681 9698657 3.41 10041338 15 349036 9711733 3.47 10060769 16 397608 9686900 3.94 10084508 17 334422 9635466 3.35 9969888 18 305874 9653289 3.07 9959163 19 327482 9665616 3.28 9993098 20 335820 9719278 3.34 10055098 21 316237 9785780 3.13 10102017 22 307658 9800469 3.04 10108127 23 296452 9859694 2.92 10156146 24 280037 9893837 2.75 10173874 25 275288 9935870 2.70 10211158 26 282856 10036065 2.74 10318921 27 266381 10039322 2.58 10305703 28 269235 10071682 2.60 10340917 29 279976 10093364 2.70 10373340 30 251017 10132480 2.42 10383497 31 264214 10173541 2.53 10437755 32 258273 10198700 2.47 10456973 33 244866 10195794 2.35 10440660 34 248243 10201227 2.38 10449470 35 247482 10226842 2.36 10474324 36 222963 10259557 2.13 10482520 37 231832 10233505 2.22 10465337 38 232111 10237812 2.22 10469923 39 226707 10235452 2.17 10462159 40 216495 10241042 2.07 10457537 41 218552 10285848 2.08 10504400 42 203010 10301869 1.93 10504879 43 204722 10260521 1.96 10465243 44 212828 10251163 2.03 10463991 45 185544 10238427 1.78 10423971 46 192741 10219602 1.85 10412343 47 197673 10139967 1.91 10337640 48 177313 10095760 1.73 10273073 49 186182 10061257 1.82 10247439 50 175945 10053294 1.72 10229239 51 170234 10007326 1.67 10177560 52 170397 9966865 1.68 10137262 53 175450 9921729 1.74 10097179 54 160555 9872921 1.60 10033476 55 162918 9854936 1.63 10017854 56 165789 9765799 1.67 9931588 57 156364 9683082 1.59 9839446 58 159919 9632350 1.63 9792269 59 165232 9547214 1.70 9712446 60 144426 9501602 1.50 9646028 61 153385 9425444 1.60 9578829 62 159500 9375550 1.67 9535050 63 147681 9276606 1.57 9424287 64 156398 9214365 1.67 9370763 65 152829 9134294 1.65 9287123 66 145043 9035525 1.58 9180568 67 152551 8946176 1.68 9098727 68 148895 8833744 1.66 8982639 69 147619 8747845 1.66 8895464 70 142929 8651703 1.63 8794632 71 153075 8586991 1.75 8740066 72 140037 8476747 1.63 8616784 73 147915 8359690 1.74 8507605 74 154303 8290363 1.83 8444666 75 140946 8194961 1.69 8335907 76 146858 8079962 1.79 8226820 77 145747 7975986 1.79 8121733 78 136457 7870996 1.70 8007453 79 144982 7773206 1.83 7918188 80 142002 7665529 1.82 7807531 81 137472 7577536 1.78 7715008 82 142531 7485074 1.87 7627605 83 144806 7399040 1.92 7543846 84 139890 7308242 1.88 7448132 85 139197 7204066 1.90 7343263 86 139468 7109069 1.92 7248537 87 135885 6990808 1.91 7126693 88 135675 6885903 1.93 7021578 89 143944 6786892 2.08 6930836 90 129392 6685606 1.90 6814998 91 138274 6587471 2.06 6725745 92 139427 6489408 2.10 6628835 93 134861 6397908 2.06 6532769 94 138754 6312449 2.15 6451203 95 133616 6225109 2.10 6358725 96 127756 6119314 2.05 6247070 97 129509 6015915 2.11 6145424 98 131445 5927082 2.17 6058527 99 127407 5823891 2.14 5951298 100 125989 5730867 2.15 5856856 101 130212 5639919 2.26 5770131 102 123697 5549461 2.18 5673158 103 127216 5476239 2.27 5603455 104 127904 5388031 2.32 5515935 105 119123 5307813 2.20 5426936 106 121837 5212381 2.28 5334218 107 123705 5116327 2.36 5240032 108 115445 5020035 2.25 5135480 109 121535 4932655 2.40 5054190 110 118273 4848155 2.38 4966428 111 116377 4763290 2.38 4879667 112 117705 4684991 2.45 4802696 113 115607 4611370 2.45 4726977 114 113045 4536713 2.43 4649758 115 111416 4456049 2.44 4567465 116 113936 4382975 2.53 4496911 117 108232 4287668 2.46 4395900 118 109466 4219706 2.53 4329172 119 112319 4140848 2.64 4253167 120 104145 4063107 2.50 4167252 121 107979 3989567 2.64 4097546 122 106941 3927905 2.65 4034846 123 102968 3859080 2.60 3962048 124 104813 3788033 2.69 3892846 125 102992 3716558 2.70 3819550 126 99052 3647544 2.64 3746596 127 101039 3582832 2.74 3683871 128 100158 3513094 2.77 3613252 129 97902 3443828 2.76 3541730 130 96165 3384122 2.76 3480287 131 96078 3314398 2.82 3410476 132 93059 3256095 2.78 3349154 133 93338 3191619 2.84 3284957 134 95499 3135657 2.96 3231156 135 90077 3071629 2.85 3161706 136 90800 3014214 2.92 3105014 137 90742 2959174 2.98 3049916 138 86767 2900865 2.90 2987632 139 89245 2840913 3.05 2930158 140 84128 2786472 2.93 2870600 141 83106 2731323 2.95 2814429 142 82804 2679632 3.00 2762436 143 83722 2629061 3.09 2712783 144 81854 2578792 3.08 2660646 145 81270 2527962 3.11 2609232 146 81296 2495816 3.15 2577112 147 79496 2460828 3.13 2540324 148 79234 2417564 3.17 2496798 149 79442 2373837 3.24 2453279 150 75245 2370430 3.08 2445675 151 96312 2168253 4.25 2264565 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 105331 427759 19.76 533090 2 102514 710625 12.61 813139 3 80589 786206 9.30 866795 4 66602 638980 9.44 705582 5 46409 773972 5.66 820381 6 34484 476726 6.75 511210 7 32874 450082 6.81 482956 8 38750 450378 7.92 489128 9 35397 440884 7.43 476281 10 38307 421727 8.33 460034 11 49003 419904 10.45 468907 12 66380 420685 13.63 487065 13 48381 405010 10.67 453391 14 34721 398433 8.02 433154 15 34445 397410 7.98 431855 16 35549 387917 8.39 423466 17 32452 383610 7.80 416062 18 32720 378819 7.95 411539 19 32120 368410 8.02 400530 20 32070 373659 7.90 405729 21 31767 361189 8.08 392956 22 30486 357289 7.86 387775 23 30155 346703 8.00 376858 24 29446 344696 7.87 374142 25 28689 331410 7.97 360099 26 27731 325438 7.85 353169 27 27374 321607 7.84 348981 28 27663 318683 7.99 346346 29 27368 308426 8.15 335794 30 26172 303909 7.93 330081 31 25088 296540 7.80 321628 32 25292 296038 7.87 321330 33 24413 288076 7.81 312489 34 23561 281897 7.71 305458 35 23039 277937 7.65 300976 36 22851 277609 7.61 300460 37 22411 266890 7.75 289301 38 21711 261513 7.67 283224 39 21262 261081 7.53 282343 40 20714 252987 7.57 273701 41 20764 247219 7.75 267983 42 19530 242325 7.46 261855 43 19367 238604 7.51 257971 44 19325 238571 7.49 257896 45 18800 231273 7.52 250073 46 18109 224757 7.46 242866 47 17996 221630 7.51 239626 48 17784 220315 7.47 238099 49 17311 213756 7.49 231067 50 16952 210203 7.46 227155 51 16658 206329 7.47 222987 52 16138 205719 7.27 221857 53 15999 197827 7.48 213826 54 15567 195211 7.39 210778 55 15334 191613 7.41 206947 56 15124 191294 7.33 206418 57 14855 184912 7.44 199767 58 14504 181106 7.41 195610 59 14810 179370 7.63 194180 60 14052 178763 7.29 192815 61 13510 171790 7.29 185300 62 13529 168837 7.42 182366 63 13412 166994 7.43 180406 64 13075 164366 7.37 177441 65 13028 159109 7.57 172137 66 12461 155922 7.40 168383 67 12116 153615 7.31 165731 68 12459 153570 7.50 166029 69 12157 148458 7.57 160615 70 11639 143039 7.52 154678 71 11620 142360 7.55 153980 72 11465 140882 7.53 152347 73 11206 135774 7.62 146980 74 10902 133444 7.55 144346 75 10962 132182 7.66 143144 76 10748 130907 7.59 141655 77 10918 126930 7.92 137848 78 10001 124029 7.46 134030 79 10231 121040 7.79 131271 80 10068 120423 7.72 130491 81 9918 117240 7.80 127158 82 9453 114445 7.63 123898 83 9407 112899 7.69 122306 84 9442 112697 7.73 122139 85 9125 108278 7.77 117403 86 8820 106901 7.62 115721 87 8865 104772 7.80 113637 88 8833 103153 7.89 111986 89 8594 100603 7.87 109197 90 8399 98171 7.88 106570 91 8183 96464 7.82 104647 92 8115 95920 7.80 104035 93 7723 92782 7.68 100505 94 7513 90567 7.66 98080 95 7656 89362 7.89 97018 96 7348 88218 7.69 95566 97 7279 85682 7.83 92961 98 7248 84578 7.89 91826 99 7073 82562 7.89 89635 100 7020 81797 7.90 88817 101 6808 79361 7.90 86169 102 6728 77575 7.98 84303 103 6588 76584 7.92 83172 104 6705 76293 8.08 82998 105 6450 73713 8.05 80163 106 6249 72035 7.98 78284 107 6189 71317 7.99 77506 108 6225 70937 8.07 77162 109 5997 68280 8.07 74277 110 5790 67235 7.93 73025 111 5708 65823 7.98 71531 112 5651 65122 7.98 70773 113 5831 63929 8.36 69760 114 5508 61953 8.16 67461 115 5428 61405 8.12 66833 116 5581 60660 8.43 66241 117 5268 58744 8.23 64012 118 5102 57475 8.15 62577 119 5022 57132 8.08 62154 120 4966 56674 8.06 61640 121 4772 54661 8.03 59433 122 4894 53893 8.32 58787 123 4726 53552 8.11 58278 124 4610 52588 8.06 57198 125 4448 51298 7.98 55746 126 4512 49618 8.34 54130 127 4423 48849 8.30 53272 128 4384 49114 8.19 53498 129 4419 47458 8.52 51877 130 4372 46561 8.58 50933 131 4242 46400 8.38 50642 132 4033 45381 8.16 49414 133 4077 44177 8.45 48254 134 3958 43716 8.30 47674 135 3932 43375 8.31 47307 136 3692 42193 8.05 45885 137 3723 41252 8.28 44975 138 3721 40500 8.41 44221 139 3574 39852 8.23 43426 140 3468 39491 8.07 42959 141 3470 38250 8.32 41720 142 3452 37422 8.45 40874 143 3406 37116 8.41 40522 144 3301 36752 8.24 40053 145 3152 35132 8.23 38284 146 3099 34625 8.21 37724 147 3085 34479 8.21 37564 148 2926 34022 7.92 36948 149 3080 32541 8.65 35621 150 2732 30556 8.21 33288 151 1923 24881 7.17 26804 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 151488 1192906 11.27 1344394 2 84885 451741 15.82 536626 3 75846 583417 11.50 659263 4 48824 530254 8.43 579078 5 27036 713996 3.65 741032 6 19427 900321 2.11 919748 7 16196 524580 2.99 540776 8 17902 507453 3.41 525355 9 15966 507288 3.05 523254 10 24220 478421 4.82 502641 11 41342 470046 8.08 511388 12 14820 469661 3.06 484481 13 13744 475815 2.81 489559 14 11539 468540 2.40 480079 15 12674 455465 2.71 468139 16 16764 441646 3.66 458410 17 10413 438534 2.32 448947 18 10929 439218 2.43 450147 19 11053 420573 2.56 431626 20 11276 408574 2.69 419850 21 9792 403597 2.37 413389 22 8695 401016 2.12 409711 23 8696 393225 2.16 401921 24 8075 386429 2.05 394504 25 7812 380707 2.01 388519 26 7335 371577 1.94 378912 27 7523 365430 2.02 372953 28 7445 358651 2.03 366096 29 7244 349873 2.03 357117 30 5993 344031 1.71 350024 31 6093 342498 1.75 348591 32 5874 333240 1.73 339114 33 5362 329678 1.60 335040 34 5313 324262 1.61 329575 35 5134 318726 1.59 323860 36 4802 313271 1.51 318073 37 4708 306959 1.51 311667 38 5064 299153 1.66 304217 39 4310 296480 1.43 300790 40 4035 292163 1.36 296198 41 3843 284926 1.33 288769 42 3628 283226 1.26 286854 43 3501 276984 1.25 280485 44 3450 271204 1.26 274654 45 3276 269576 1.20 272852 46 3282 262138 1.24 265420 47 3489 256710 1.34 260199 48 2746 254738 1.07 257484 49 2763 250976 1.09 253739 50 2617 245643 1.05 248260 51 2458 241628 1.01 244086 52 2321 238540 0.96 240861 53 2308 232406 0.98 234714 54 2190 229460 0.95 231650 55 2285 226126 1.00 228411 56 2659 221428 1.19 224087 57 2016 218344 0.91 220360 58 1956 216016 0.90 217972 59 1958 208460 0.93 210418 60 1775 206323 0.85 208098 61 1747 202000 0.86 203747 62 1732 197524 0.87 199256 63 1599 193784 0.82 195383 64 1817 192925 0.93 194742 65 2158 188512 1.13 190670 66 1533 185251 0.82 186784 67 1524 182409 0.83 183933 68 1497 177970 0.83 179467 69 1541 174931 0.87 176472 70 1429 171491 0.83 172920 71 1469 167371 0.87 168840 72 1429 163984 0.86 165413 73 1547 161955 0.95 163502 74 1835 160335 1.13 162170 75 1354 156121 0.86 157475 76 1313 152471 0.85 153784 77 1293 149875 0.86 151168 78 1191 146290 0.81 147481 79 1308 143288 0.90 144596 80 1234 140562 0.87 141796 81 1211 138004 0.87 139215 82 1373 136011 1.00 137384 83 1589 133237 1.18 134826 84 1172 132027 0.88 133199 85 1139 130066 0.87 131205 86 1076 125117 0.85 126193 87 1135 123623 0.91 124758 88 1087 120579 0.89 121666 89 1151 118897 0.96 120048 90 1077 116912 0.91 117989 91 1168 114307 1.01 115475 92 1463 112156 1.29 113619 93 1061 110296 0.95 111357 94 1006 109503 0.91 110509 95 1011 106412 0.94 107423 96 901 104227 0.86 105128 97 884 103342 0.85 104226 98 919 100254 0.91 101173 99 932 97484 0.95 98416 100 1068 96445 1.10 97513 101 1285 93404 1.36 94689 102 874 92184 0.94 93058 103 894 91733 0.97 92627 104 929 89459 1.03 90388 105 762 88252 0.86 89014 106 764 86223 0.88 86987 107 802 84472 0.94 85274 108 787 83204 0.94 83991 109 914 81762 1.11 82676 110 1006 80055 1.24 81061 111 825 79431 1.03 80256 112 801 77351 1.02 78152 113 803 76140 1.04 76943 114 744 75324 0.98 76068 115 717 72996 0.97 73713 116 750 71509 1.04 72259 117 704 69984 1.00 70688 118 772 69089 1.11 69861 119 934 68070 1.35 69004 120 694 66356 1.04 67050 121 713 66299 1.06 67012 122 670 65744 1.01 66414 123 627 64199 0.97 64826 124 650 62094 1.04 62744 125 686 60869 1.11 61555 126 613 59494 1.02 60107 127 663 58878 1.11 59541 128 785 57432 1.35 58217 129 604 56435 1.06 57039 130 606 55976 1.07 56582 131 573 54490 1.04 55063 132 548 54133 1.00 54681 133 569 52513 1.07 53082 134 549 51498 1.05 52047 135 564 50602 1.10 51166 136 630 49846 1.25 50476 137 630 48690 1.28 49320 138 544 48215 1.12 48759 139 551 47494 1.15 48045 140 495 45875 1.07 46370 141 497 45449 1.08 45946 142 478 44928 1.05 45406 143 450 44443 1.00 44893 144 470 42928 1.08 43398 145 523 42337 1.22 42860 146 551 41336 1.32 41887 147 470 40706 1.14 41176 148 430 39911 1.07 40341 149 415 38674 1.06 39089 150 409 37204 1.09 37613 151 321 29330 1.08 29651 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 353981 1166276 23.28 1520257 2 338111 1609238 17.36 1947349 3 252574 1386294 15.41 1638868 4 225498 1307387 14.71 1532885 5 134566 1585914 7.82 1720480 6 124401 1834840 6.35 1959241 7 97507 2079242 4.48 2176749 8 117769 1950114 5.70 2067883 9 76602 1872963 3.93 1949565 10 73709 1785886 3.96 1859595 11 85098 1701103 4.76 1786201 12 75546 1648028 4.38 1723574 13 67808 1620129 4.02 1687937 14 68650 1609146 4.09 1677796 15 69186 1593192 4.16 1662378 16 85486 1547546 5.23 1633032 17 64912 1527120 4.08 1592032 18 59199 1484099 3.84 1543298 19 65740 1461413 4.30 1527153 20 61739 1437232 4.12 1498971 21 58697 1408947 4.00 1467644 22 56693 1389979 3.92 1446672 23 54875 1374958 3.84 1429833 24 49330 1350961 3.52 1400291 25 46035 1334275 3.34 1380310 26 48238 1327548 3.51 1375786 27 43430 1296721 3.24 1340151 28 42372 1273258 3.22 1315630 29 46499 1249354 3.59 1295853 30 37056 1230176 2.92 1267232 31 40703 1211775 3.25 1252478 32 39496 1191218 3.21 1230714 33 36824 1169749 3.05 1206573 34 37611 1151837 3.16 1189448 35 37428 1133599 3.20 1171027 36 31359 1120913 2.72 1152272 37 33104 1098471 2.93 1131575 38 33420 1080933 3.00 1114353 39 32444 1062107 2.96 1094551 40 29675 1044634 2.76 1074309 41 30307 1029810 2.86 1060117 42 26522 1018654 2.54 1045176 43 27853 995726 2.72 1023579 44 31568 980650 3.12 1012218 45 23927 968670 2.41 992597 46 25659 956975 2.61 982634 47 27859 935334 2.89 963193 48 22414 915519 2.39 937933 49 26389 902741 2.84 929130 50 22909 890609 2.51 913518 51 21461 875010 2.39 896471 52 21897 859941 2.48 881838 53 24316 847350 2.79 871666 54 19960 832792 2.34 852752 55 19464 825256 2.30 844720 56 21382 810908 2.57 832290 57 19245 790288 2.38 809533 58 19780 779354 2.48 799134 59 21304 764600 2.71 785904 60 15145 753959 1.97 769104 61 17251 738569 2.28 755820 62 19520 728722 2.61 748242 63 16180 712940 2.22 729120 64 18259 702302 2.53 720561 65 16943 690980 2.39 707923 66 14975 679099 2.16 694074 67 17094 664955 2.51 682049 68 15638 651760 2.34 667398 69 15892 639208 2.43 655100 70 13936 629183 2.17 643119 71 17014 618796 2.68 635810 72 13201 603950 2.14 617151 73 14963 591842 2.47 606805 74 16633 585801 2.76 602434 75 13144 575044 2.23 588188 76 14682 560566 2.55 575248 77 14500 551404 2.56 565904 78 11707 539487 2.12 551194 79 13958 530174 2.57 544132 80 13568 519272 2.55 532840 81 11771 509892 2.26 521663 82 12948 501156 2.52 514104 83 13997 491006 2.77 505003 84 12687 485034 2.55 497721 85 12179 476765 2.49 488944 86 12596 469086 2.62 481682 87 11096 458375 2.36 469471 88 11021 449666 2.39 460687 89 13727 440344 3.02 454071 90 9368 430796 2.13 440164 91 11112 423770 2.56 434882 92 11850 417073 2.76 428923 93 10489 408476 2.50 418965 94 12154 403651 2.92 415805 95 10537 397484 2.58 408021 96 9199 389935 2.30 399134 97 10068 380302 2.58 390370 98 10847 375764 2.81 386611 99 9598 367004 2.55 376602 100 8769 361207 2.37 369976 101 10423 354714 2.85 365137 102 8854 347738 2.48 356592 103 9939 344835 2.80 354774 104 10048 338184 2.89 348232 105 7771 332480 2.28 340251 106 8833 327717 2.62 336550 107 9868 321248 2.98 331116 108 7365 312716 2.30 320081 109 8878 306939 2.81 315817 110 8333 302571 2.68 310904 111 7903 296519 2.60 304422 112 8551 291557 2.85 300108 113 8353 287586 2.82 295939 114 7664 283480 2.63 291144 115 7401 278827 2.59 286228 116 8356 272301 2.98 280657 117 6897 266024 2.53 272921 118 7254 262575 2.69 269829 119 8259 257435 3.11 265694 120 6415 251818 2.48 258233 121 7399 247977 2.90 255376 122 7127 244956 2.83 252083 123 6436 241474 2.60 247910 124 7149 237433 2.92 244582 125 6860 232580 2.87 239440 126 5938 228462 2.53 234400 127 6516 224505 2.82 231021 128 6541 220321 2.88 226862 129 6259 216162 2.81 222421 130 5995 212746 2.74 218741 131 6247 208418 2.91 214665 132 5463 205629 2.59 211092 133 5716 201884 2.75 207600 134 6348 198286 3.10 204634 135 4949 193882 2.49 198831 136 5332 191121 2.71 196453 137 5675 187336 2.94 193011 138 5068 184790 2.67 189858 139 5570 181049 2.98 186619 140 4861 178236 2.65 183097 141 4569 174924 2.55 179493 142 4816 172068 2.72 176884 143 5245 168932 3.01 174177 144 4522 165105 2.67 169627 145 4352 162111 2.61 166463 146 4737 159411 2.89 164148 147 4230 156569 2.63 160799 148 4388 154292 2.77 158680 149 4226 149353 2.75 153579 150 3163 142714 2.17 145877 151 2881 113803 2.47 116684