CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 433262 1660719 20.69 2093981 2 481852 2627023 15.50 3108875 3 405308 3150182 11.40 3555490 4 275423 2729773 9.16 3005196 5 161497 3149281 4.88 3310778 6 146770 2289297 6.02 2436067 7 141156 2071603 6.38 2212759 8 157452 2253390 6.53 2410842 9 168338 2333566 6.73 2501904 10 153285 2168839 6.60 2322124 11 202638 2194126 8.45 2396764 12 242128 2231024 9.79 2473152 13 156303 2224337 6.57 2380640 14 148879 2228427 6.26 2377306 15 151262 2263764 6.26 2415026 16 157438 2211137 6.65 2368575 17 143665 2204839 6.12 2348504 18 143723 2345019 5.77 2488742 19 142961 2253063 5.97 2396024 20 152456 2338073 6.12 2490529 21 152017 2356159 6.06 2508176 22 148466 2360284 5.92 2508750 23 149974 2393464 5.90 2543438 24 147718 2405368 5.79 2553086 25 146673 2356086 5.86 2502759 26 146524 2353636 5.86 2500160 27 144906 2343503 5.82 2488409 28 145512 2361577 5.80 2507089 29 144382 2348464 5.79 2492846 30 143023 2363638 5.71 2506661 31 142300 2355943 5.70 2498243 32 144710 2376584 5.74 2521294 33 144982 2390455 5.72 2535437 34 142070 2373272 5.65 2515342 35 142690 2389532 5.63 2532222 36 143446 2427612 5.58 2571058 37 142953 2394631 5.63 2537584 38 141637 2388123 5.60 2529760 39 142762 2418924 5.57 2561686 40 141120 2388069 5.58 2529189 41 142218 2380557 5.64 2522775 42 139115 2366397 5.55 2505512 43 138912 2362286 5.55 2501198 44 140126 2390944 5.54 2531070 45 139213 2378177 5.53 2517390 46 138433 2357587 5.55 2496020 47 138973 2363864 5.55 2502837 48 139308 2373943 5.54 2513251 49 138085 2341240 5.57 2479325 50 138644 2330761 5.61 2469405 51 136508 2330512 5.53 2467020 52 136913 2335267 5.54 2472180 53 135271 2295765 5.56 2431036 54 133935 2283795 5.54 2417730 55 134635 2271415 5.60 2406050 56 134521 2276791 5.58 2411312 57 133785 2263682 5.58 2397467 58 133010 2237479 5.61 2370489 59 133475 2231709 5.64 2365184 60 132789 2239346 5.60 2372135 61 131349 2184796 5.67 2316145 62 129720 2170034 5.64 2299754 63 128682 2157112 5.63 2285794 64 127249 2136652 5.62 2263901 65 127165 2111302 5.68 2238467 66 125299 2092520 5.65 2217819 67 124779 2070952 5.68 2195731 68 126773 2076252 5.75 2203025 69 124243 2036761 5.75 2161004 70 121548 2009194 5.70 2130742 71 121336 1991368 5.74 2112704 72 120246 1972563 5.75 2092809 73 118968 1935271 5.79 2054239 74 116848 1909831 5.77 2026679 75 116712 1899007 5.79 2015719 76 115076 1887410 5.75 2002486 77 115022 1842662 5.88 1957684 78 112085 1821140 5.80 1933225 79 111093 1790983 5.84 1902076 80 110168 1774034 5.85 1884202 81 109632 1753526 5.88 1863158 82 108137 1718790 5.92 1826927 83 106524 1697798 5.90 1804322 84 106670 1686725 5.95 1793395 85 104226 1642198 5.97 1746424 86 103418 1620819 6.00 1724237 87 101418 1602310 5.95 1703728 88 100364 1580005 5.97 1680369 89 99107 1544478 6.03 1643585 90 96875 1522122 5.98 1618997 91 96609 1497686 6.06 1594295 92 95333 1484035 6.04 1579368 93 94600 1447814 6.13 1542414 94 92732 1419482 6.13 1512214 95 91655 1397208 6.16 1488863 96 89253 1381139 6.07 1470392 97 87997 1350200 6.12 1438197 98 85940 1324510 6.09 1410450 99 85761 1302928 6.18 1388689 100 84227 1286644 6.14 1370871 101 82696 1252436 6.19 1335132 102 81752 1233749 6.21 1315501 103 80546 1206889 6.26 1287435 104 79682 1190648 6.27 1270330 105 77443 1164295 6.24 1241738 106 76314 1139935 6.27 1216249 107 74822 1123025 6.25 1197847 108 74574 1107755 6.31 1182329 109 73006 1077958 6.34 1150964 110 72044 1057229 6.38 1129273 111 70596 1036709 6.38 1107305 112 69533 1020393 6.38 1089926 113 68668 998224 6.44 1066892 114 66348 976316 6.36 1042664 115 65865 956163 6.44 1022028 116 64725 947559 6.39 1012284 117 62851 919349 6.40 982200 118 62120 897878 6.47 959998 119 61092 883369 6.47 944461 120 60631 870376 6.51 931007 121 58803 848703 6.48 907506 122 58529 831468 6.58 889997 123 56817 815005 6.52 871822 124 55936 802081 6.52 858017 125 54823 779663 6.57 834486 126 53771 764743 6.57 818514 127 53324 750711 6.63 804035 128 52344 736123 6.64 788467 129 51535 720916 6.67 772451 130 50307 703177 6.68 753484 131 49271 689126 6.67 738397 132 48631 678220 6.69 726851 133 47437 656905 6.73 704342 134 46639 646658 6.73 693297 135 45542 633975 6.70 679517 136 44834 619743 6.75 664577 137 44110 606058 6.78 650168 138 43152 593650 6.78 636802 139 42772 579855 6.87 622627 140 41962 571975 6.83 613937 141 40229 554218 6.77 594447 142 39288 540717 6.77 580005 143 38398 529715 6.76 568113 144 37258 519176 6.70 556434 145 36583 505139 6.75 541722 146 36072 498361 6.75 534433 147 35468 492072 6.72 527540 148 36044 483588 6.94 519632 149 36346 470727 7.17 507073 150 33574 463240 6.76 496814 151 31137 431341 6.73 462478 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 573749 4636236 11.01 5209985 2 467495 1692320 21.65 2159815 3 520760 2494732 17.27 3015492 4 214349 2224359 8.79 2438708 5 75377 2783544 2.64 2858921 6 71436 3494303 2.00 3565739 7 71495 2300576 3.01 2372071 8 81410 2405265 3.27 2486675 9 58863 2431432 2.36 2490295 10 117196 2346134 4.76 2463330 11 134688 2367384 5.38 2502072 12 58564 2429604 2.35 2488168 13 43778 2493950 1.73 2537728 14 73047 2464896 2.88 2537943 15 49274 2468179 1.96 2517453 16 80546 2408345 3.24 2488891 17 45012 2475340 1.79 2520352 18 38686 2496922 1.53 2535608 19 40970 2569039 1.57 2610009 20 52546 2499309 2.06 2551855 21 37243 2513116 1.46 2550359 22 32814 2619861 1.24 2652675 23 32598 2591268 1.24 2623866 24 30717 2564934 1.18 2595651 25 32036 2571002 1.23 2603038 26 31333 2543502 1.22 2574835 27 29318 2537550 1.14 2566868 28 30283 2547316 1.17 2577599 29 29463 2547437 1.14 2576900 30 27279 2571950 1.05 2599229 31 27448 2602575 1.04 2630023 32 27240 2581851 1.04 2609091 33 26642 2602023 1.01 2628665 34 26158 2604013 0.99 2630171 35 26546 2613550 1.01 2640096 36 25437 2620730 0.96 2646167 37 25459 2608191 0.97 2633650 38 26475 2587377 1.01 2613852 39 24260 2608584 0.92 2632844 40 24930 2617068 0.94 2641998 41 25026 2595279 0.96 2620305 42 24070 2613843 0.91 2637913 43 24149 2601318 0.92 2625467 44 24722 2592879 0.94 2617601 45 24463 2603795 0.93 2628258 46 24489 2589926 0.94 2614415 47 25638 2577624 0.98 2603262 48 24732 2578875 0.95 2603607 49 25305 2580861 0.97 2606166 50 25132 2552675 0.97 2577807 51 24822 2555708 0.96 2580530 52 24923 2543032 0.97 2567955 53 25622 2522081 1.01 2547703 54 25274 2510035 1.00 2535309 55 25798 2503615 1.02 2529413 56 26808 2493204 1.06 2520012 57 26494 2489948 1.05 2516442 58 26745 2484832 1.06 2511577 59 26917 2431726 1.09 2458643 60 26827 2426730 1.09 2453557 61 27669 2408476 1.14 2436145 62 27955 2365981 1.17 2393936 63 27714 2356490 1.16 2384204 64 28582 2347654 1.20 2376236 65 29703 2331031 1.26 2360734 66 28641 2313248 1.22 2341889 67 29113 2295289 1.25 2324402 68 29166 2256307 1.28 2285473 69 29478 2239135 1.30 2268613 70 29760 2209676 1.33 2239436 71 30242 2179615 1.37 2209857 72 29801 2155506 1.36 2185307 73 30326 2138691 1.40 2169017 74 31186 2114405 1.45 2145591 75 30043 2089328 1.42 2119371 76 30521 2065734 1.46 2096255 77 30724 2028027 1.49 2058751 78 30070 2004419 1.48 2034489 79 30293 1975144 1.51 2005437 80 30827 1938422 1.57 1969249 81 30546 1922170 1.56 1952716 82 30696 1897492 1.59 1928188 83 31461 1860189 1.66 1891650 84 30405 1843122 1.62 1873527 85 30871 1822855 1.67 1853726 86 30803 1780507 1.70 1811310 87 30277 1761226 1.69 1791503 88 30304 1727169 1.72 1757473 89 30840 1699543 1.78 1730383 90 29923 1681023 1.75 1710946 91 30357 1650673 1.81 1681030 92 30763 1616247 1.87 1647010 93 29853 1596578 1.84 1626431 94 30132 1571751 1.88 1601883 95 29720 1538184 1.90 1567904 96 28968 1516620 1.87 1545588 97 28864 1490006 1.90 1518870 98 29041 1462188 1.95 1491229 99 28221 1433655 1.93 1461876 100 28660 1406671 2.00 1435331 101 28750 1378220 2.04 1406970 102 28140 1356605 2.03 1384745 103 27970 1339094 2.05 1367064 104 27926 1307002 2.09 1334928 105 27067 1288238 2.06 1315305 106 26970 1261087 2.09 1288057 107 26725 1233422 2.12 1260147 108 26569 1213022 2.14 1239591 109 26222 1188783 2.16 1215005 110 26579 1163872 2.23 1190451 111 25812 1144295 2.21 1170107 112 25858 1124680 2.25 1150538 113 25467 1100301 2.26 1125768 114 24942 1081465 2.25 1106407 115 24330 1054228 2.26 1078558 116 24528 1031666 2.32 1056194 117 23661 1012559 2.28 1036220 118 23323 992899 2.30 1016222 119 23431 972963 2.35 996394 120 22999 954416 2.35 977415 121 22644 940451 2.35 963095 122 22712 918006 2.41 940718 123 22091 902213 2.39 924304 124 21791 877489 2.42 899280 125 21667 857764 2.46 879431 126 21067 840372 2.45 861439 127 20734 822987 2.46 843721 128 21063 807942 2.54 829005 129 20555 792719 2.53 813274 130 20357 776749 2.55 797106 131 19946 755389 2.57 775335 132 19858 743611 2.60 763469 133 19408 723963 2.61 743371 134 19090 709399 2.62 728489 135 18594 696161 2.60 714755 136 18558 682133 2.65 700691 137 18140 667577 2.65 685717 138 18079 654421 2.69 672500 139 17898 637870 2.73 655768 140 17632 622097 2.76 639729 141 17183 613030 2.73 630213 142 16346 595786 2.67 612132 143 15893 581740 2.66 597633 144 15524 569515 2.65 585039 145 15518 560532 2.69 576050 146 15516 550514 2.74 566030 147 15099 539715 2.72 554814 148 15370 530383 2.82 545753 149 15675 518719 2.93 534394 150 16416 519935 3.06 536351 151 20646 476573 4.15 497219 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1807392 5005140 26.53 6812532 2 1832415 6283790 22.58 8116205 3 1351000 5814566 18.85 7165566 4 1000060 5614337 15.12 6614397 5 503631 6520333 7.17 7023964 6 524492 7540185 6.50 8064677 7 465541 8322799 5.30 8788340 8 437482 8169089 5.08 8606571 9 348803 8031801 4.16 8380604 10 315618 7771866 3.90 8087484 11 373214 7701888 4.62 8075102 12 309739 7727105 3.85 8036844 13 287769 7771085 3.57 8058854 14 292019 7775317 3.62 8067336 15 307306 7795062 3.79 8102368 16 351223 7772960 4.32 8124183 17 281568 7707889 3.52 7989457 18 243316 7692074 3.07 7935390 19 252175 7686932 3.18 7939107 20 297705 7750470 3.70 8048175 21 245899 7903207 3.02 8149106 22 230088 7899158 2.83 8129246 23 223045 7974693 2.72 8197738 24 209684 8005305 2.55 8214989 25 206181 8032509 2.50 8238690 26 213856 8136648 2.56 8350504 27 197955 8159151 2.37 8357106 28 197557 8198020 2.35 8395577 29 208701 8247350 2.47 8456051 30 184984 8282657 2.18 8467641 31 191015 8313572 2.25 8504587 32 190517 8327127 2.24 8517644 33 177488 8325544 2.09 8503032 34 177062 8334390 2.08 8511452 35 182489 8364609 2.14 8547098 36 160336 8405277 1.87 8565613 37 166630 8379853 1.95 8546483 38 171317 8378855 2.00 8550172 39 161360 8374844 1.89 8536204 40 157310 8379435 1.84 8536745 41 159482 8421317 1.86 8580799 42 149419 8438872 1.74 8588291 43 147705 8408928 1.73 8556633 44 158294 8413628 1.85 8571922 45 134851 8412985 1.58 8547836 46 138946 8407843 1.63 8546789 47 149971 8338628 1.77 8488599 48 131452 8301492 1.56 8432944 49 138949 8277736 1.65 8416685 50 135367 8272377 1.61 8407744 51 127569 8232935 1.53 8360504 52 127361 8199749 1.53 8327110 53 136417 8164746 1.64 8301163 54 123501 8142633 1.49 8266134 55 124602 8132054 1.51 8256656 56 131229 8057480 1.60 8188709 57 122868 7994243 1.51 8117111 58 124260 7941866 1.54 8066126 59 130841 7870576 1.64 8001417 60 116526 7834273 1.47 7950799 61 120843 7768212 1.53 7889055 62 131504 7724101 1.67 7855605 63 119095 7651500 1.53 7770595 64 124385 7598403 1.61 7722788 65 127492 7540893 1.66 7668385 66 117774 7453447 1.56 7571221 67 125198 7369011 1.67 7494209 68 125046 7278063 1.69 7403109 69 122094 7194943 1.67 7317037 70 119453 7110066 1.65 7229519 71 128519 7047457 1.79 7175976 72 117878 6959046 1.67 7076924 73 123472 6869005 1.77 6992477 74 130385 6811502 1.88 6941887 75 120237 6728877 1.76 6849114 76 121951 6628698 1.81 6750649 77 125539 6526145 1.89 6651684 78 118272 6437268 1.80 6555540 79 122860 6336536 1.90 6459396 80 124163 6248519 1.95 6372682 81 116526 6171987 1.85 6288513 82 120584 6090640 1.94 6211224 83 125521 6006891 2.05 6132412 84 119568 5926543 1.98 6046111 85 118513 5839245 1.99 5957758 86 120639 5748015 2.06 5868654 87 117012 5643953 2.03 5760965 88 114975 5550850 2.03 5665825 89 122836 5462916 2.20 5585752 90 112113 5379543 2.04 5491656 91 115991 5279796 2.15 5395787 92 120172 5193451 2.26 5313623 93 114088 5109912 2.18 5224000 94 116665 5036854 2.26 5153519 95 115042 4953138 2.27 5068180 96 108446 4859466 2.18 4967912 97 110148 4762996 2.26 4873144 98 113461 4689034 2.36 4802495 99 106590 4600643 2.26 4707233 100 105559 4513802 2.29 4619361 101 110484 4423942 2.44 4534426 102 105172 4349172 2.36 4454344 103 107218 4282725 2.44 4389943 104 107747 4209434 2.50 4317181 105 100022 4133929 2.36 4233951 106 100574 4053132 2.42 4153706 107 105554 3973564 2.59 4079118 108 96393 3889975 2.42 3986368 109 99203 3814880 2.53 3914083 110 99815 3737526 2.60 3837341 111 94946 3667427 2.52 3762373 112 95969 3592390 2.60 3688359 113 97012 3533471 2.67 3630483 114 92819 3466811 2.61 3559630 115 91302 3395454 2.62 3486756 116 93700 3333187 2.73 3426887 117 88231 3255028 2.64 3343259 118 88338 3197628 2.69 3285966 119 91600 3128414 2.84 3220014 120 84377 3063224 2.68 3147601 121 85278 3000308 2.76 3085586 122 85845 2944896 2.83 3030741 123 82224 2891170 2.77 2973394 124 82658 2830461 2.84 2913119 125 83200 2771040 2.91 2854240 126 78484 2714245 2.81 2792729 127 79321 2659180 2.90 2738501 128 80180 2606589 2.98 2686769 129 76752 2551052 2.92 2627804 130 75843 2495820 2.95 2571663 131 75539 2438497 3.00 2514036 132 72389 2390242 2.94 2462631 133 72979 2343461 3.02 2416440 134 75125 2290617 3.18 2365742 135 69733 2242178 3.02 2311911 136 69477 2193529 3.07 2263006 137 70766 2151390 3.18 2222156 138 66564 2107323 3.06 2173887 139 67364 2060385 3.17 2127749 140 65509 2013812 3.15 2079321 141 62973 1969235 3.10 2032208 142 62965 1926951 3.16 1989916 143 63429 1887125 3.25 1950554 144 61049 1848392 3.20 1909441 145 60538 1807698 3.24 1868236 146 60419 1782588 3.28 1843007 147 59034 1747106 3.27 1806140 148 57707 1715528 3.25 1773235 149 58568 1682022 3.36 1740590 150 56282 1671176 3.26 1727458 151 71564 1532266 4.46 1603830 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 72311 308141 19.01 380452 2 72909 557972 11.56 630881 3 63262 615092 9.33 678354 4 46089 504996 8.36 551085 5 28577 637365 4.29 665942 6 23482 376773 5.87 400255 7 22331 350611 5.99 372942 8 27993 352696 7.35 380689 9 24201 350674 6.46 374875 10 25857 325922 7.35 351779 11 35303 325861 9.77 361164 12 48404 324347 12.99 372751 13 24501 310587 7.31 335088 14 21926 305317 6.70 327243 15 22373 303034 6.88 325407 16 24118 291440 7.64 315558 17 20858 288389 6.74 309247 18 20888 283581 6.86 304469 19 20848 272513 7.11 293361 20 21045 281040 6.97 302085 21 20575 271552 7.04 292127 22 19266 263932 6.80 283198 23 19525 260707 6.97 280232 24 18698 256345 6.80 275043 25 18037 245349 6.85 263386 26 17969 242150 6.91 260119 27 17189 235719 6.80 252908 28 17565 236609 6.91 254174 29 17108 227200 7.00 244308 30 15945 222884 6.68 238829 31 15438 215803 6.68 231241 32 15673 215984 6.77 231657 33 15031 211437 6.64 226468 34 14163 204149 6.49 218312 35 14133 202657 6.52 216790 36 13850 203649 6.37 217499 37 13640 193168 6.60 206808 38 13273 189781 6.54 203054 39 12993 189598 6.41 202591 40 12518 183380 6.39 195898 41 12294 178322 6.45 190616 42 11735 174098 6.31 185833 43 11464 170376 6.30 181840 44 11297 172973 6.13 184270 45 10968 164772 6.24 175740 46 10795 160022 6.32 170817 47 10590 158404 6.27 168994 48 10512 157137 6.27 167649 49 10257 152035 6.32 162292 50 10059 148989 6.32 159048 51 9752 147249 6.21 157001 52 9585 147276 6.11 156861 53 9236 140687 6.16 149923 54 9061 136352 6.23 145413 55 8852 134375 6.18 143227 56 8961 133626 6.28 142587 57 8442 129678 6.11 138120 58 8181 126930 6.06 135111 59 8368 125640 6.24 134008 60 8120 126461 6.03 134581 61 7823 119659 6.14 127482 62 7762 117851 6.18 125613 63 7624 116340 6.15 123964 64 7479 113645 6.17 121124 65 7309 109984 6.23 117293 66 7007 107523 6.12 114530 67 7073 106030 6.25 113103 68 7184 107546 6.26 114730 69 6975 101622 6.42 108597 70 6645 98577 6.32 105222 71 6344 97157 6.13 103501 72 6298 96512 6.13 102810 73 6254 92978 6.30 99232 74 6036 90850 6.23 96886 75 6144 90224 6.38 96368 76 5986 90567 6.20 96553 77 5900 86486 6.39 92386 78 5620 83713 6.29 89333 79 5562 81804 6.37 87366 80 5596 81218 6.45 86814 81 5377 79724 6.32 85101 82 5252 77388 6.36 82640 83 5081 75857 6.28 80938 84 5152 76156 6.34 81308 85 4991 72307 6.46 77298 86 4872 71898 6.35 76770 87 4902 70814 6.47 75716 88 4862 69427 6.54 74289 89 4611 67028 6.44 71639 90 4548 65914 6.45 70462 91 4318 63867 6.33 68185 92 4379 64825 6.33 69204 93 4129 61648 6.28 65777 94 4194 59760 6.56 63954 95 4155 59449 6.53 63604 96 4072 59003 6.46 63075 97 3924 57365 6.40 61289 98 3911 55620 6.57 59531 99 3677 54452 6.33 58129 100 3759 54771 6.42 58530 101 3613 52359 6.46 55972 102 3542 51217 6.47 54759 103 3460 50216 6.45 53676 104 3510 50470 6.50 53980 105 3423 48737 6.56 52160 106 3254 47596 6.40 50850 107 3334 46377 6.71 49711 108 3214 46484 6.47 49698 109 3090 44069 6.55 47159 110 3105 43505 6.66 46610 111 3152 42562 6.90 45714 112 2969 41921 6.61 44890 113 3102 41183 7.00 44285 114 2868 39955 6.70 42823 115 2818 39435 6.67 42253 116 2797 39412 6.63 42209 117 2813 37685 6.95 40498 118 2645 36704 6.72 39349 119 2590 36406 6.64 38996 120 2602 36012 6.74 38614 121 2605 35152 6.90 37757 122 2581 34598 6.94 37179 123 2450 33926 6.74 36376 124 2327 33689 6.46 36016 125 2330 32087 6.77 34417 126 2374 31631 6.98 34005 127 2270 31159 6.79 33429 128 2258 30682 6.85 32940 129 2245 29985 6.97 32230 130 2057 29228 6.58 31285 131 2176 29217 6.93 31393 132 2075 28836 6.71 30911 133 2050 27698 6.89 29748 134 2020 27228 6.91 29248 135 1968 26551 6.90 28519 136 1897 25984 6.80 27881 137 1897 25548 6.91 27445 138 1822 25050 6.78 26872 139 1792 24669 6.77 26461 140 1917 24813 7.17 26730 141 1712 23561 6.77 25273 142 1733 23093 6.98 24826 143 1724 23055 6.96 24779 144 1633 22367 6.80 24000 145 1634 21802 6.97 23436 146 1617 21393 7.03 23010 147 1508 21304 6.61 22812 148 1466 20843 6.57 22309 149 1481 20091 6.87 21572 150 1384 18932 6.81 20316 151 1025 15196 6.32 16221 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 109118 1056897 9.36 1166015 2 66147 300860 18.02 367007 3 74190 432659 14.64 506849 4 34990 388683 8.26 423673 5 13680 544462 2.45 558142 6 14527 702454 2.03 716981 7 11930 387250 2.99 399180 8 14144 381008 3.58 395152 9 11675 382937 2.96 394612 10 19388 357245 5.15 376633 11 35738 348816 9.29 384554 12 9446 347319 2.65 356765 13 7655 351678 2.13 359333 14 7719 336380 2.24 344099 15 8582 334047 2.50 342629 16 11624 321001 3.49 332625 17 6894 317318 2.13 324212 18 7558 310754 2.37 318312 19 8274 304094 2.65 312368 20 9634 295278 3.16 304912 21 6768 289302 2.29 296070 22 6061 287114 2.07 293175 23 5953 280765 2.08 286718 24 5414 274682 1.93 280096 25 5380 271526 1.94 276906 26 5009 265923 1.85 270932 27 5177 257639 1.97 262816 28 5365 251749 2.09 257114 29 4973 246328 1.98 251301 30 3936 242481 1.60 246417 31 3901 242104 1.59 246005 32 3827 234396 1.61 238223 33 3686 232493 1.56 236179 34 3383 227947 1.46 231330 35 3265 223843 1.44 227108 36 3114 219937 1.40 223051 37 3180 215079 1.46 218259 38 3656 207901 1.73 211557 39 2642 204943 1.27 207585 40 2544 204080 1.23 206624 41 2353 197308 1.18 199661 42 2321 197592 1.16 199913 43 2241 190866 1.16 193107 44 2148 187070 1.14 189218 45 2015 184783 1.08 186798 46 2084 179737 1.15 181821 47 2568 175729 1.44 178297 48 1837 173069 1.05 174906 49 1784 172949 1.02 174733 50 1652 166346 0.98 167998 51 1522 163847 0.92 165369 52 1581 162520 0.96 164101 53 1513 157455 0.95 158968 54 1385 154231 0.89 155616 55 1512 152336 0.98 153848 56 2014 148202 1.34 150216 57 1378 146572 0.93 147950 58 1254 146859 0.85 148113 59 1272 139271 0.91 140543 60 1181 137963 0.85 139144 61 1178 135161 0.86 136339 62 1210 130506 0.92 131716 63 1083 129206 0.83 130289 64 1227 127556 0.95 128783 65 1650 125514 1.30 127164 66 976 123178 0.79 124154 67 1091 119964 0.90 121055 68 987 117037 0.84 118024 69 944 114663 0.82 115607 70 895 111775 0.79 112670 71 973 109667 0.88 110640 72 865 107371 0.80 108236 73 1008 106500 0.94 107508 74 1523 105488 1.42 107011 75 924 102584 0.89 103508 76 944 100816 0.93 101760 77 851 97025 0.87 97876 78 794 94856 0.83 95650 79 865 92897 0.92 93762 80 848 90325 0.93 91173 81 816 89766 0.90 90582 82 905 88775 1.01 89680 83 1311 85762 1.51 87073 84 785 85737 0.91 86522 85 790 83517 0.94 84307 86 709 80125 0.88 80834 87 711 80192 0.88 80903 88 692 77726 0.88 78418 89 757 76174 0.98 76931 90 735 75486 0.96 76221 91 737 72819 1.00 73556 92 1215 71011 1.68 72226 93 664 70187 0.94 70851 94 675 69581 0.96 70256 95 629 67282 0.93 67911 96 575 65469 0.87 66044 97 582 64534 0.89 65116 98 641 62641 1.01 63282 99 584 61567 0.94 62151 100 664 60275 1.09 60939 101 971 59150 1.62 60121 102 581 57976 0.99 58557 103 618 58329 1.05 58947 104 532 55849 0.94 56381 105 492 55034 0.89 55526 106 547 54348 1.00 54895 107 538 52600 1.01 53138 108 463 51574 0.89 52037 109 616 50272 1.21 50888 110 860 49218 1.72 50078 111 551 49157 1.11 49708 112 538 48036 1.11 48574 113 532 46784 1.12 47316 114 472 46655 1.00 47127 115 470 44544 1.04 45014 116 464 43959 1.04 44423 117 465 43319 1.06 43784 118 495 42209 1.16 42704 119 731 41337 1.74 42068 120 455 40723 1.10 41178 121 429 40589 1.05 41018 122 441 39427 1.11 39868 123 387 39023 0.98 39410 124 388 37643 1.02 38031 125 362 36686 0.98 37048 126 332 35632 0.92 35964 127 446 34952 1.26 35398 128 576 34136 1.66 34712 129 413 34036 1.20 34449 130 384 33728 1.13 34112 131 350 32228 1.07 32578 132 376 32422 1.15 32798 133 364 31369 1.15 31733 134 329 30393 1.07 30722 135 340 29758 1.13 30098 136 340 29361 1.14 29701 137 491 28604 1.69 29095 138 336 28915 1.15 29251 139 365 27952 1.29 28317 140 330 27046 1.21 27376 141 302 26890 1.11 27192 142 297 26025 1.13 26322 143 342 25693 1.31 26035 144 301 25120 1.18 25421 145 311 24791 1.24 25102 146 371 24482 1.49 24853 147 251 23668 1.05 23919 148 272 23291 1.15 23563 149 256 22254 1.14 22510 150 228 21523 1.05 21751 151 210 17358 1.20 17568 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 253373 797214 24.12 1050587 2 255131 1179677 17.78 1434808 3 191426 960020 16.62 1151446 4 152841 869705 14.95 1022546 5 81470 1123736 6.76 1205206 6 92711 1314657 6.59 1407368 7 68529 1511038 4.34 1579567 8 90464 1402465 6.06 1492929 9 50069 1347760 3.58 1397829 10 49632 1268251 3.77 1317883 11 59573 1197224 4.74 1256797 12 51655 1161319 4.26 1212974 13 44541 1141837 3.75 1186378 14 45340 1127290 3.87 1172630 15 46957 1117938 4.03 1164895 16 60256 1080779 5.28 1141035 17 44406 1067222 3.99 1111628 18 39369 1028297 3.69 1067666 19 43532 1007388 4.14 1050920 20 43288 993546 4.18 1036834 21 37496 976239 3.70 1013735 22 37331 959791 3.74 997122 23 35812 944183 3.65 979995 24 31627 926515 3.30 958142 25 29493 915848 3.12 945341 26 32126 912082 3.40 944208 27 26679 887750 2.92 914429 28 26422 870076 2.95 896498 29 30089 854742 3.40 884831 30 22951 836723 2.67 859674 31 25670 825955 3.01 851625 32 25479 812532 3.04 838011 33 22342 793818 2.74 816160 34 22681 778761 2.83 801442 35 24684 768631 3.11 793315 36 18401 760388 2.36 778789 37 20188 739216 2.66 759404 38 21080 730399 2.81 751479 39 19334 713861 2.64 733195 40 18297 700525 2.55 718822 41 18454 690576 2.60 709030 42 15759 680411 2.26 696170 43 16256 664272 2.39 680528 44 20478 654029 3.04 674507 45 13472 644853 2.05 658325 46 14706 635546 2.26 650252 47 17866 618278 2.81 636144 48 12960 604239 2.10 617199 49 16070 592758 2.64 608828 50 14283 585362 2.38 599645 51 12047 575331 2.05 587378 52 12510 564008 2.17 576518 53 16144 552643 2.84 568787 54 11573 543208 2.09 554781 55 11517 539955 2.09 551472 56 13297 526905 2.46 540202 57 11254 512154 2.15 523408 58 12209 504330 2.36 516539 59 13054 493548 2.58 506602 60 8921 485810 1.80 494731 61 9749 477510 2.00 487259 62 13126 468718 2.72 481844 63 9083 457787 1.95 466870 64 10453 451000 2.27 461453 65 11018 446424 2.41 457442 66 8440 434883 1.90 443323 67 10870 424151 2.50 435021 68 9963 414938 2.34 424901 69 8888 406423 2.14 415311 70 7949 399458 1.95 407407 71 10954 394222 2.70 405176 72 7423 382762 1.90 390185 73 8899 374860 2.32 383759 74 10790 370490 2.83 381280 75 7536 364246 2.03 371782 76 9084 354602 2.50 363686 77 9288 346877 2.61 356165 78 6694 339863 1.93 346557 79 8233 332313 2.42 340546 80 9323 325603 2.78 334926 81 6355 319129 1.95 325484 82 7444 313430 2.32 320874 83 9103 307490 2.88 316593 84 7415 303926 2.38 311341 85 7655 297185 2.51 304840 86 7794 292035 2.60 299829 87 6518 283991 2.24 290509 88 6394 277180 2.25 283574 89 9074 272903 3.22 281977 90 5154 268135 1.89 273289 91 6254 262179 2.33 268433 92 7679 256574 2.91 264253 93 5975 251076 2.32 257051 94 7479 248905 2.92 256384 95 6700 244496 2.67 251196 96 5148 237100 2.13 242248 97 5880 232018 2.47 237898 98 7268 230065 3.06 237333 99 5546 223112 2.43 228658 100 5063 218959 2.26 224022 101 6304 215701 2.84 222005 102 5095 212001 2.35 217096 103 6281 209156 2.92 215437 104 6327 206599 2.97 212926 105 4284 201284 2.08 205568 106 4828 197144 2.39 201972 107 6574 192286 3.31 198860 108 3990 188267 2.08 192257 109 4955 184379 2.62 189334 110 5293 180657 2.85 185950 111 4191 177333 2.31 181524 112 5092 174214 2.84 179306 113 5056 171966 2.86 177022 114 4192 169322 2.42 173514 115 4101 165178 2.42 169279 116 5369 161532 3.22 166901 117 3763 157265 2.34 161028 118 3849 155278 2.42 159127 119 5043 152226 3.21 157269 120 3435 148865 2.26 152300 121 4132 146363 2.75 150495 122 4305 144749 2.89 149054 123 3587 141750 2.47 145337 124 3880 139438 2.71 143318 125 4382 136009 3.12 140391 126 3032 133502 2.22 136534 127 3669 130451 2.74 134120 128 3870 127890 2.94 131760 129 3299 125642 2.56 128941 130 3395 123208 2.68 126603 131 3515 120999 2.82 124514 132 2841 118049 2.35 120890 133 3125 116316 2.62 119441 134 3882 114428 3.28 118310 135 2587 111825 2.26 114412 136 2815 109832 2.50 112647 137 3397 106868 3.08 110265 138 2605 105857 2.40 108462 139 3155 102909 2.97 106064 140 2839 101415 2.72 104254 141 2487 99290 2.44 101777 142 2629 97869 2.62 100498 143 3086 96684 3.09 99770 144 2345 93593 2.44 95938 145 2282 91886 2.42 94168 146 2602 90453 2.80 93055 147 2291 88231 2.53 90522 148 2371 86801 2.66 89172 149 2417 84388 2.78 86805 150 1634 80600 1.99 82234 151 1555 64615 2.35 66170