CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 559391 2462831 18.51 3022222 2 589089 4089146 12.59 4678235 3 464520 4716428 8.97 5180948 4 394228 3735624 9.55 4129852 5 259798 4692871 5.25 4952669 6 206998 3143375 6.18 3350373 7 198436 2957793 6.29 3156229 8 221632 3139285 6.59 3360917 9 226187 3129529 6.74 3355716 10 230004 3059788 6.99 3289792 11 273490 3101754 8.10 3375244 12 324130 3190207 9.22 3514337 13 273993 3151549 8.00 3425542 14 238860 3168935 7.01 3407795 15 239716 3198019 6.97 3437735 16 243186 3171442 7.12 3414628 17 234408 3182151 6.86 3416559 18 237045 3300262 6.70 3537307 19 235199 3199562 6.85 3434761 20 239573 3289687 6.79 3529260 21 241937 3290342 6.85 3532279 22 241126 3307536 6.79 3548662 23 243166 3312830 6.84 3555996 24 241421 3354668 6.71 3596089 25 239472 3303676 6.76 3543148 26 241702 3310955 6.80 3552657 27 238776 3326070 6.70 3564846 28 242362 3354360 6.74 3596722 29 241247 3328806 6.76 3570053 30 240754 3338549 6.73 3579303 31 240274 3317326 6.75 3557600 32 243091 3346482 6.77 3589573 33 240560 3365076 6.67 3605636 34 238956 3342846 6.67 3581802 35 238861 3359006 6.64 3597867 36 239725 3408924 6.57 3648649 37 240304 3370300 6.66 3610604 38 238602 3370971 6.61 3609573 39 241525 3410298 6.61 3651823 40 238186 3370741 6.60 3608927 41 238945 3358004 6.64 3596949 42 235424 3349951 6.57 3585375 43 235467 3337925 6.59 3573392 44 236195 3374601 6.54 3610796 45 235498 3363412 6.54 3598910 46 235830 3335782 6.60 3571612 47 235441 3337154 6.59 3572595 48 235699 3362902 6.55 3598601 49 234025 3320728 6.58 3554753 50 235091 3307036 6.64 3542127 51 232956 3305749 6.58 3538705 52 232014 3302032 6.57 3534046 53 230041 3261411 6.59 3491452 54 229541 3246634 6.60 3476175 55 228685 3234694 6.60 3463379 56 228959 3244631 6.59 3473590 57 227484 3223522 6.59 3451006 58 225746 3186827 6.62 3412573 59 227857 3183006 6.68 3410863 60 225228 3194535 6.59 3419763 61 223232 3123613 6.67 3346845 62 220724 3108099 6.63 3328823 63 219760 3092993 6.63 3312753 64 218700 3067836 6.65 3286536 65 216391 3030119 6.67 3246510 66 214567 3004771 6.66 3219338 67 211578 2975680 6.64 3187258 68 214929 2987807 6.71 3202736 69 211805 2938010 6.72 3149815 70 207611 2895566 6.69 3103177 71 205629 2875725 6.67 3081354 72 203960 2862025 6.65 3065985 73 203357 2804771 6.76 3008128 74 200926 2764827 6.77 2965753 75 199052 2752468 6.74 2951520 76 197448 2733364 6.74 2930812 77 196854 2676411 6.85 2873265 78 193800 2654180 6.80 2847980 79 191113 2610830 6.82 2801943 80 189406 2590734 6.81 2780140 81 188669 2560525 6.86 2749194 82 186306 2513913 6.90 2700219 83 183593 2481792 6.89 2665385 84 182236 2468320 6.88 2650556 85 180414 2406246 6.97 2586660 86 177410 2381582 6.93 2558992 87 174356 2350891 6.90 2525247 88 172899 2321124 6.93 2494023 89 171213 2279244 6.99 2450457 90 169132 2246377 7.00 2415509 91 166645 2205109 7.03 2371754 92 165127 2184357 7.03 2349484 93 161745 2138204 7.03 2299949 94 159156 2096240 7.06 2255396 95 158242 2070629 7.10 2228871 96 154683 2047682 7.02 2202365 97 151081 2000134 7.02 2151215 98 149454 1968620 7.06 2118074 99 147418 1936474 7.07 2083892 100 145480 1910238 7.08 2055718 101 142710 1866440 7.10 2009150 102 141460 1833894 7.16 1975354 103 139062 1800265 7.17 1939327 104 137952 1778561 7.20 1916513 105 135398 1736740 7.23 1872138 106 133176 1701118 7.26 1834294 107 130403 1677937 7.21 1808340 108 128838 1657362 7.21 1786200 109 126142 1609581 7.27 1735723 110 124735 1582529 7.31 1707264 111 122131 1552363 7.29 1674494 112 120243 1528858 7.29 1649101 113 117967 1495703 7.31 1613670 114 116315 1460693 7.38 1577008 115 114450 1434778 7.39 1549228 116 112988 1415064 7.39 1528052 117 109978 1377753 7.39 1487731 118 108661 1347008 7.46 1455669 119 106167 1325745 7.41 1431912 120 104342 1307490 7.39 1411832 121 103143 1273517 7.49 1376660 122 101433 1250461 7.50 1351894 123 99765 1225589 7.53 1325354 124 97465 1202025 7.50 1299490 125 94989 1170892 7.50 1265881 126 93726 1148479 7.55 1242205 127 91923 1124715 7.56 1216638 128 91797 1106456 7.66 1198253 129 90158 1078836 7.71 1168994 130 87703 1052067 7.69 1139770 131 85987 1032663 7.69 1118650 132 84086 1015077 7.65 1099163 133 82043 987853 7.67 1069896 134 80945 968095 7.72 1049040 135 79336 948784 7.72 1028120 136 77980 926492 7.76 1004472 137 76702 904313 7.82 981015 138 74325 885827 7.74 960152 139 73615 867208 7.82 940823 140 72144 853877 7.79 926021 141 69549 827952 7.75 897501 142 67703 807521 7.74 875224 143 66328 791092 7.74 857420 144 65233 777460 7.74 842693 145 63377 754633 7.75 818010 146 62300 741505 7.75 803805 147 62128 730450 7.84 792578 148 62366 720515 7.97 782881 149 63396 704757 8.25 768153 150 58016 695361 7.70 753377 151 51904 645650 7.44 697554 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 739105 6765753 9.85 7504858 2 450829 2633255 14.62 3084084 3 352340 3760931 8.57 4113271 4 268311 3296029 7.53 3564340 5 111666 4290682 2.54 4402348 6 85126 5512610 1.52 5597736 7 78937 3456359 2.23 3535296 8 83881 3448170 2.37 3532051 9 70569 3518949 1.97 3589518 10 109203 3408067 3.10 3517270 11 130126 3463415 3.62 3593541 12 69861 3558639 1.93 3628500 13 61841 3650381 1.67 3712222 14 70931 3618379 1.92 3689310 15 59772 3622795 1.62 3682567 16 78730 3578126 2.15 3656856 17 54058 3637934 1.46 3691992 18 50121 3687622 1.34 3737743 19 49938 3672845 1.34 3722783 20 52726 3611666 1.44 3664392 21 48101 3653735 1.30 3701836 22 45358 3722642 1.20 3768000 23 44291 3714219 1.18 3758510 24 41916 3714481 1.12 3756397 25 42078 3733320 1.11 3775398 26 42020 3702750 1.12 3744770 27 40637 3715750 1.08 3756387 28 40789 3716135 1.09 3756924 29 41214 3703651 1.10 3744865 30 38613 3717491 1.03 3756104 31 38792 3757321 1.02 3796113 32 38211 3734139 1.01 3772350 33 37100 3766032 0.98 3803132 34 37441 3762850 0.99 3800291 35 36783 3779871 0.96 3816654 36 36141 3790224 0.94 3826365 37 36509 3779547 0.96 3816056 38 37414 3750721 0.99 3788135 39 35488 3782636 0.93 3818124 40 34841 3787313 0.91 3822154 41 34583 3768772 0.91 3803355 42 33981 3800938 0.89 3834919 43 34078 3788293 0.89 3822371 44 34199 3771185 0.90 3805384 45 33419 3787181 0.87 3820600 46 33623 3763938 0.89 3797561 47 35015 3753115 0.92 3788130 48 33717 3764026 0.89 3797743 49 34150 3760779 0.90 3794929 50 33114 3727196 0.88 3760310 51 33079 3736906 0.88 3769985 52 33160 3728285 0.88 3761445 53 33340 3700119 0.89 3733459 54 32713 3682830 0.88 3715543 55 33484 3665433 0.91 3698917 56 35283 3643897 0.96 3679180 57 33741 3650104 0.92 3683845 58 34133 3634730 0.93 3668863 59 34427 3578881 0.95 3613308 60 33878 3577161 0.94 3611039 61 34636 3554808 0.96 3589444 62 34522 3499624 0.98 3534146 63 35018 3488563 0.99 3523581 64 35706 3472853 1.02 3508559 65 36773 3440798 1.06 3477571 66 35531 3421004 1.03 3456535 67 35830 3393941 1.04 3429771 68 35997 3345305 1.06 3381302 69 36385 3320144 1.08 3356529 70 35981 3280659 1.08 3316640 71 36866 3243764 1.12 3280630 72 36690 3217915 1.13 3254605 73 37623 3184091 1.17 3221714 74 38606 3153151 1.21 3191757 75 37125 3112522 1.18 3149647 76 37339 3081959 1.20 3119298 77 37689 3035635 1.23 3073324 78 37113 3006096 1.22 3043209 79 37367 2964162 1.24 3001529 80 37885 2909858 1.29 2947743 81 38096 2891503 1.30 2929599 82 38254 2854271 1.32 2892525 83 38942 2806764 1.37 2845706 84 37976 2777210 1.35 2815186 85 38346 2742984 1.38 2781330 86 38073 2688243 1.40 2726316 87 37667 2662094 1.40 2699761 88 38065 2613955 1.44 2652020 89 38604 2576612 1.48 2615216 90 37933 2547115 1.47 2585048 91 38276 2500844 1.51 2539120 92 39051 2456820 1.56 2495871 93 37943 2429483 1.54 2467426 94 37663 2390394 1.55 2428057 95 37784 2343392 1.59 2381176 96 37327 2312332 1.59 2349659 97 36637 2271985 1.59 2308622 98 37063 2227235 1.64 2264298 99 36703 2189666 1.65 2226369 100 36435 2152257 1.66 2188692 101 37360 2108030 1.74 2145390 102 36058 2080473 1.70 2116531 103 35879 2050906 1.72 2086785 104 35830 2002531 1.76 2038361 105 35295 1976884 1.75 2012179 106 35266 1939247 1.79 1974513 107 34914 1899414 1.80 1934328 108 34668 1864639 1.83 1899307 109 35091 1829185 1.88 1864276 110 35108 1788945 1.92 1824053 111 34080 1763879 1.90 1797959 112 33814 1728759 1.92 1762573 113 33462 1696890 1.93 1730352 114 33267 1665165 1.96 1698432 115 32415 1624076 1.96 1656491 116 32684 1593784 2.01 1626468 117 31739 1565649 1.99 1597388 118 32230 1533324 2.06 1565554 119 32246 1499690 2.10 1531936 120 31052 1473142 2.06 1504194 121 31204 1452643 2.10 1483847 122 30648 1417567 2.12 1448215 123 29886 1393354 2.10 1423240 124 30127 1356587 2.17 1386714 125 29621 1324436 2.19 1354057 126 29524 1300403 2.22 1329927 127 28970 1271877 2.23 1300847 128 29293 1243316 2.30 1272609 129 28498 1221612 2.28 1250110 130 28050 1197746 2.29 1225796 131 28039 1167062 2.35 1195101 132 27391 1146152 2.33 1173543 133 27070 1119197 2.36 1146267 134 26836 1092897 2.40 1119733 135 26341 1068929 2.40 1095270 136 26089 1045728 2.43 1071817 137 26038 1024653 2.48 1050691 138 24985 1003817 2.43 1028802 139 24931 981832 2.48 1006763 140 24328 957389 2.48 981717 141 23723 937319 2.47 961042 142 23036 913915 2.46 936951 143 22644 894134 2.47 916778 144 22778 874482 2.54 897260 145 22534 855873 2.57 878407 146 22243 844040 2.57 866283 147 22445 829540 2.63 851985 148 22325 811911 2.68 834236 149 23296 794011 2.85 817307 150 24281 802078 2.94 826359 151 34185 730989 4.47 765174 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2071754 7030166 22.76 9101920 2 1914982 9363831 16.98 11278813 3 1398032 8604659 13.98 10002691 4 1296272 8190421 13.66 9486693 5 654641 9776406 6.28 10431047 6 577790 11238704 4.89 11816494 7 523836 12791712 3.93 13315548 8 518657 12388051 4.02 12906708 9 431169 12011614 3.47 12442783 10 405379 11751667 3.33 12157046 11 451523 11594184 3.75 12045707 12 392215 11500795 3.30 11893010 13 378259 11499707 3.18 11877966 14 381422 11513875 3.21 11895297 15 378944 11536735 3.18 11915679 16 419490 11539984 3.51 11959474 17 366378 11470064 3.10 11836442 18 327975 11493591 2.77 11821566 19 351486 11518990 2.96 11870476 20 358221 11595166 3.00 11953387 21 335604 11664876 2.80 12000480 22 328525 11681972 2.74 12010497 23 320368 11745212 2.66 12065580 24 302350 11793096 2.50 12095446 25 292976 11852427 2.41 12145403 26 308255 11961059 2.51 12269314 27 287291 11960921 2.35 12248212 28 288644 12007697 2.35 12296341 29 305143 12032886 2.47 12338029 30 267652 12081549 2.17 12349201 31 284676 12146936 2.29 12431612 32 278475 12185872 2.23 12464347 33 264520 12193787 2.12 12458307 34 270641 12208197 2.17 12478838 35 271112 12252777 2.16 12523889 36 243822 12301862 1.94 12545684 37 254577 12276517 2.03 12531094 38 256810 12301507 2.04 12558317 39 250679 12303697 2.00 12554376 40 238861 12314012 1.90 12552873 41 245405 12361294 1.95 12606699 42 227623 12393112 1.80 12620735 43 228329 12359122 1.81 12587451 44 243617 12365468 1.93 12609085 45 208671 12351565 1.66 12560236 46 218702 12342327 1.74 12561029 47 228499 12272352 1.83 12500851 48 201039 12232294 1.62 12433333 49 216081 12202145 1.74 12418226 50 203647 12201890 1.64 12405537 51 197273 12162579 1.60 12359852 52 196688 12123930 1.60 12320618 53 206658 12074216 1.68 12280874 54 189702 12016921 1.55 12206623 55 188600 12000608 1.55 12189208 56 197282 11910066 1.63 12107348 57 184104 11826213 1.53 12010317 58 187719 11768047 1.57 11955766 59 196583 11689996 1.65 11886579 60 170464 11640267 1.44 11810731 61 182579 11545294 1.56 11727873 62 192853 11488515 1.65 11681368 63 176436 11375665 1.53 11552101 64 187718 11306609 1.63 11494327 65 185819 11215089 1.63 11400908 66 175943 11095754 1.56 11271697 67 186021 11001278 1.66 11187299 68 180799 10886376 1.63 11067175 69 179602 10779773 1.64 10959375 70 172721 10662030 1.59 10834751 71 188808 10580957 1.75 10769765 72 170837 10442703 1.61 10613540 73 180767 10311922 1.72 10492689 74 191480 10215478 1.84 10406958 75 172846 10099693 1.68 10272539 76 181084 9971177 1.78 10152261 77 181559 9835745 1.81 10017304 78 168447 9717735 1.70 9886182 79 179624 9585831 1.84 9765455 80 177583 9452548 1.84 9630131 81 170658 9338555 1.79 9509213 82 177536 9227233 1.89 9404769 83 182252 9116287 1.96 9298539 84 176145 8993906 1.92 9170051 85 172525 8870575 1.91 9043100 86 176303 8745466 1.98 8921769 87 170137 8602007 1.94 8772144 88 169955 8469041 1.97 8638996 89 182476 8332154 2.14 8514630 90 161838 8207762 1.93 8369600 91 174159 8070990 2.11 8245149 92 176151 7944448 2.17 8120599 93 168459 7816836 2.11 7985295 94 176035 7709748 2.23 7885783 95 169496 7591649 2.18 7761145 96 161379 7464564 2.12 7625943 97 162564 7329813 2.17 7492377 98 166970 7216336 2.26 7383306 99 161959 7080781 2.24 7242740 100 158325 6953991 2.23 7112316 101 165611 6832925 2.37 6998536 102 156926 6712167 2.28 6869093 103 160572 6607147 2.37 6767719 104 162550 6494361 2.44 6656911 105 149981 6385051 2.30 6535032 106 152469 6265020 2.38 6417489 107 158329 6144263 2.51 6302592 108 145816 6017604 2.37 6163420 109 152979 5902011 2.53 6054990 110 150024 5790525 2.53 5940549 111 146483 5678181 2.51 5824664 112 146833 5574432 2.57 5721265 113 145759 5482369 2.59 5628128 114 142797 5372131 2.59 5514928 115 139159 5271464 2.57 5410623 116 144288 5173440 2.71 5317728 117 135287 5051338 2.61 5186625 118 136887 4956596 2.69 5093483 119 141542 4856473 2.83 4998015 120 129910 4754871 2.66 4884781 121 134442 4662052 2.80 4796494 122 132637 4579420 2.81 4712057 123 128160 4495878 2.77 4624038 124 130272 4399286 2.88 4529558 125 127926 4307107 2.88 4435033 126 122356 4212514 2.82 4334870 127 125238 4123907 2.95 4249145 128 124198 4039824 2.98 4164022 129 121089 3953125 2.97 4074214 130 118421 3869776 2.97 3988197 131 118220 3785969 3.03 3904189 132 113754 3709036 2.98 3822790 133 114231 3634497 3.05 3748728 134 117642 3554644 3.20 3672286 135 108826 3472047 3.04 3580873 136 111205 3399786 3.17 3510991 137 110541 3325810 3.22 3436351 138 105510 3258016 3.14 3363526 139 108378 3183170 3.29 3291548 140 102366 3114945 3.18 3217311 141 100180 3044044 3.19 3144224 142 99636 2977986 3.24 3077622 143 101025 2914180 3.35 3015205 144 99516 2849269 3.37 2948785 145 97074 2788251 3.36 2885325 146 97844 2744481 3.44 2842325 147 96136 2694248 3.45 2790384 148 95208 2646353 3.47 2741561 149 95408 2596930 3.54 2692338 150 90748 2593016 3.38 2683764 151 118442 2381087 4.74 2499529 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 112318 496057 18.46 608375 2 110858 823947 11.86 934805 3 87276 896123 8.87 983399 4 77655 700704 9.98 778359 5 49985 876890 5.39 926875 6 38007 536030 6.62 574037 7 36592 504378 6.76 540970 8 42386 507007 7.72 549393 9 39385 490819 7.43 530204 10 41515 471058 8.10 512573 11 52007 467897 10.00 519904 12 67887 467277 12.69 535164 13 51623 448394 10.32 500017 14 38815 440335 8.10 479150 15 37877 435428 8.00 473305 16 39021 424127 8.43 463148 17 35493 417789 7.83 453282 18 35532 411117 7.96 446649 19 35172 397487 8.13 432659 20 34517 401124 7.92 435641 21 34618 387011 8.21 421629 22 33194 381495 8.00 414689 23 32581 370557 8.08 403138 24 31497 367254 7.90 398751 25 30478 350947 7.99 381425 26 29660 344811 7.92 374471 27 29720 339909 8.04 369629 28 29333 335930 8.03 365263 29 28209 324432 8.00 352641 30 27271 317457 7.91 344728 31 26591 309137 7.92 335728 32 26540 306494 7.97 333034 33 25592 300017 7.86 325609 34 24534 291232 7.77 315766 35 24106 287566 7.73 311672 36 23802 285677 7.69 309479 37 23052 273414 7.78 296466 38 22342 267039 7.72 289381 39 22216 265631 7.72 287847 40 21004 258177 7.52 279181 41 21082 251302 7.74 272384 42 19899 244929 7.51 264828 43 19920 240617 7.65 260537 44 19446 240139 7.49 259585 45 18933 231847 7.55 250780 46 18611 225490 7.62 244101 47 17973 221593 7.50 239566 48 17911 220119 7.52 238030 49 17195 211742 7.51 228937 50 16875 208836 7.48 225711 51 16400 204917 7.41 221317 52 16083 202367 7.36 218450 53 15686 195112 7.44 210798 54 15146 189756 7.39 204902 55 14952 186557 7.42 201509 56 14783 185927 7.37 200710 57 14542 180048 7.47 194590 58 14300 175327 7.54 189627 59 14151 173826 7.53 187977 60 13675 172743 7.34 186418 61 13275 164814 7.45 178089 62 13125 161675 7.51 174800 63 12651 158155 7.41 170806 64 12617 156404 7.46 169021 65 12166 150353 7.49 162519 66 12202 147352 7.65 159554 67 11629 144426 7.45 156055 68 11844 145025 7.55 156869 69 11396 138278 7.61 149674 70 11034 134452 7.58 145486 71 10637 132717 7.42 143354 72 10569 131522 7.44 142091 73 10557 126297 7.71 136854 74 10039 122900 7.55 132939 75 9835 120904 7.52 130739 76 9604 121061 7.35 130665 77 9702 115555 7.75 125257 78 9361 112961 7.65 122322 79 9081 111064 7.56 120145 80 8945 109154 7.57 118099 81 9061 105427 7.91 114488 82 8786 102926 7.86 111712 83 8475 101614 7.70 110089 84 8547 101485 7.77 110032 85 8248 96132 7.90 104380 86 8109 93924 7.95 102033 87 7783 93364 7.69 101147 88 7593 91433 7.67 99026 89 7553 88229 7.89 95782 90 7244 85932 7.77 93176 91 7072 84433 7.73 91505 92 6955 84017 7.65 90972 93 6856 80337 7.86 87193 94 6650 78709 7.79 85359 95 6515 77258 7.78 83773 96 6313 76824 7.59 83137 97 6185 74195 7.69 80380 98 6159 71841 7.90 78000 99 5946 70709 7.76 76655 100 5861 69711 7.76 75572 101 5778 66907 7.95 72685 102 5748 65477 8.07 71225 103 5522 64820 7.85 70342 104 5528 64271 7.92 69799 105 5489 61807 8.16 67296 106 5272 60044 8.07 65316 107 5256 59368 8.13 64624 108 5056 58761 7.92 63817 109 4859 55970 7.99 60829 110 4814 54867 8.07 59681 111 4656 53945 7.95 58601 112 4726 53134 8.17 57860 113 4562 51729 8.10 56291 114 4375 50012 8.04 54387 115 4214 49512 7.84 53726 116 4206 49167 7.88 53373 117 4220 47076 8.23 51296 118 3928 45820 7.90 49748 119 3957 44976 8.09 48933 120 4067 44883 8.31 48950 121 3857 43122 8.21 46979 122 3917 43040 8.34 46957 123 3624 41943 7.95 45567 124 3543 41337 7.89 44880 125 3518 39748 8.13 43266 126 3377 39303 7.91 42680 127 3535 38249 8.46 41784 128 3328 38003 8.05 41331 129 3336 36250 8.43 39586 130 3271 35468 8.44 38739 131 3212 35185 8.37 38397 132 3151 35124 8.23 38275 133 3118 33505 8.51 36623 134 3030 32838 8.45 35868 135 2932 32663 8.24 35595 136 2918 31902 8.38 34820 137 2737 31076 8.09 33813 138 2795 30342 8.43 33137 139 2706 30047 8.26 32753 140 2641 29787 8.14 32428 141 2511 28338 8.14 30849 142 2453 27428 8.21 29881 143 2547 27269 8.54 29816 144 2473 26869 8.43 29342 145 2398 25691 8.54 28089 146 2309 25773 8.22 28082 147 2325 25362 8.40 27687 148 2182 24794 8.09 26976 149 2133 23859 8.21 25992 150 1988 22612 8.08 24600 151 1470 18580 7.33 20050 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 159068 1391549 10.26 1550617 2 85849 517744 14.22 603593 3 73199 658264 10.01 731463 4 54079 597825 8.30 651904 5 28046 783074 3.46 811120 6 20386 1009918 1.98 1030304 7 17320 586392 2.87 603712 8 18646 562121 3.21 580767 9 16850 561805 2.91 578655 10 24856 528635 4.49 553491 11 40063 519744 7.16 559807 12 15576 517007 2.92 532583 13 14878 523602 2.76 538480 14 12632 508247 2.43 520879 15 13553 496643 2.66 510196 16 16424 479757 3.31 496181 17 11132 472317 2.30 483449 18 11534 473260 2.38 484794 19 11688 451170 2.53 462858 20 12167 436471 2.71 448638 21 10427 429700 2.37 440127 22 9481 424209 2.19 433690 23 9177 416327 2.16 425504 24 8534 408581 2.05 417115 25 8305 401983 2.02 410288 26 7829 391389 1.96 399218 27 7625 381579 1.96 389204 28 7782 373409 2.04 381191 29 7781 363333 2.10 371114 30 6568 355456 1.81 362024 31 6342 355364 1.75 361706 32 6185 343379 1.77 349564 33 5743 339489 1.66 345232 34 5506 333171 1.63 338677 35 5349 326137 1.61 331486 36 4895 318923 1.51 323818 37 5053 312143 1.59 317196 38 5520 301491 1.80 307011 39 4375 299624 1.44 303999 40 4188 295153 1.40 299341 41 3939 286139 1.36 290078 42 3772 285079 1.31 288851 43 3658 276164 1.31 279822 44 3389 269951 1.24 273340 45 3224 265995 1.20 269219 46 3342 258683 1.28 262025 47 3788 253798 1.47 257586 48 2870 251001 1.13 253871 49 2974 246905 1.19 249879 50 2710 239722 1.12 242432 51 2536 237191 1.06 239727 52 2408 232569 1.02 234977 53 2324 226130 1.02 228454 54 2125 221009 0.95 223134 55 2328 216914 1.06 219242 56 2908 212519 1.35 215427 57 1963 209172 0.93 211135 58 1938 207049 0.93 208987 59 1900 199762 0.94 201662 60 1769 196600 0.89 198369 61 1712 191476 0.89 193188 62 1638 186421 0.87 188059 63 1608 183349 0.87 184957 64 1735 180706 0.95 182441 65 2294 177040 1.28 179334 66 1441 172988 0.83 174429 67 1430 169626 0.84 171056 68 1443 164639 0.87 166082 69 1508 162163 0.92 163671 70 1302 157480 0.82 158782 71 1430 153646 0.92 155076 72 1332 149992 0.88 151324 73 1408 147587 0.94 148995 74 2016 146501 1.36 148517 75 1278 141648 0.89 142926 76 1384 139962 0.98 141346 77 1249 135650 0.91 136899 78 1187 132798 0.89 133985 79 1196 129207 0.92 130403 80 1139 125872 0.90 127011 81 1136 123273 0.91 124409 82 1269 121466 1.03 122735 83 1653 118456 1.38 120109 84 1158 116722 0.98 117880 85 1050 114280 0.91 115330 86 1106 109924 1.00 111030 87 1041 109961 0.94 111002 88 960 105835 0.90 106795 89 1096 103528 1.05 104624 90 980 101789 0.95 102769 91 1163 99095 1.16 100258 92 1607 96940 1.63 98547 93 989 95272 1.03 96261 94 903 93637 0.96 94540 95 916 91081 1.00 91997 96 895 88760 1.00 89655 97 814 86699 0.93 87513 98 899 85073 1.05 85972 99 829 82333 1.00 83162 100 936 80465 1.15 81401 101 1323 78840 1.65 80163 102 766 77620 0.98 78386 103 808 77434 1.03 78242 104 796 74681 1.05 75477 105 726 73414 0.98 74140 106 703 71944 0.97 72647 107 691 69784 0.98 70475 108 693 68131 1.01 68824 109 849 65924 1.27 66773 110 1081 64498 1.65 65579 111 680 63605 1.06 64285 112 682 63097 1.07 63779 113 713 61826 1.14 62539 114 659 61195 1.07 61854 115 621 57741 1.06 58362 116 649 56918 1.13 57567 117 661 55995 1.17 56656 118 678 54325 1.23 55003 119 960 53268 1.77 54228 120 611 52392 1.15 53003 121 607 52322 1.15 52929 122 619 51103 1.20 51722 123 526 50526 1.03 51052 124 552 48080 1.14 48632 125 501 47265 1.05 47766 126 567 46139 1.21 46706 127 554 44826 1.22 45380 128 767 43582 1.73 44349 129 555 43373 1.26 43928 130 546 42595 1.27 43141 131 513 41556 1.22 42069 132 489 41156 1.17 41645 133 489 39382 1.23 39871 134 442 38800 1.13 39242 135 455 37583 1.20 38038 136 509 37101 1.35 37610 137 599 36492 1.61 37091 138 426 35783 1.18 36209 139 463 34774 1.31 35237 140 436 33839 1.27 34275 141 402 33691 1.18 34093 142 364 32997 1.09 33361 143 373 31999 1.15 32372 144 376 31601 1.18 31977 145 390 31062 1.24 31452 146 507 30226 1.65 30733 147 363 29565 1.21 29928 148 362 28670 1.25 29032 149 314 27881 1.11 28195 150 314 27383 1.13 27697 151 293 22180 1.30 22473 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 371426 1314943 22.03 1686369 2 354240 1806662 16.39 2160902 3 261785 1534128 14.58 1795913 4 248091 1428344 14.80 1676435 5 137320 1719711 7.39 1857031 6 124870 1968947 5.96 2093817 7 102116 2237406 4.36 2339522 8 120372 2092680 5.44 2213052 9 81989 1999217 3.94 2081206 10 78561 1901182 3.97 1979743 11 89797 1809922 4.73 1899719 12 79198 1748363 4.33 1827561 13 73191 1716197 4.09 1789388 14 73593 1695188 4.16 1768781 15 71245 1674042 4.08 1745287 16 85841 1625354 5.02 1711195 17 69182 1596666 4.15 1665848 18 60073 1552665 3.72 1612738 19 67700 1524449 4.25 1592149 20 63392 1489211 4.08 1552603 21 59446 1460196 3.91 1519642 22 58555 1431626 3.93 1490181 23 57007 1413239 3.88 1470246 24 51007 1386786 3.55 1437793 25 47087 1364364 3.34 1411451 26 51380 1351617 3.66 1402997 27 44586 1316555 3.28 1361141 28 43524 1291917 3.26 1335441 29 49138 1264703 3.74 1313841 30 37375 1237915 2.93 1275290 31 41668 1218304 3.31 1259972 32 40522 1196920 3.27 1237442 33 36594 1168544 3.04 1205138 34 38999 1145976 3.29 1184975 35 39050 1128803 3.34 1167853 36 31214 1109624 2.74 1140838 37 33746 1084250 3.02 1117996 38 34282 1067579 3.11 1101861 39 33452 1046277 3.10 1079729 40 30122 1023451 2.86 1053573 41 31288 1006751 3.01 1038039 42 26509 989206 2.61 1015715 43 27562 968657 2.77 996219 44 32954 950563 3.35 983517 45 22994 935662 2.40 958656 46 25581 920768 2.70 946349 47 29201 899368 3.14 928569 48 22085 878262 2.45 900347 49 27071 860138 3.05 887209 50 22848 848862 2.62 871710 51 20629 830745 2.42 851374 52 21277 814324 2.55 835601 53 25179 797813 3.06 822992 54 19934 783680 2.48 803614 55 18840 775074 2.37 793914 56 21687 757117 2.78 778804 57 19082 735835 2.53 754917 58 19878 725167 2.67 745045 59 21672 706580 2.98 728252 60 14307 698038 2.01 712345 61 16709 681715 2.39 698424 62 20284 670575 2.94 690859 63 15301 650678 2.30 665979 64 17969 639872 2.73 657841 65 17162 629432 2.65 646594 66 14684 614825 2.33 629509 67 17417 602585 2.81 620002 68 15566 587772 2.58 603338 69 15225 574656 2.58 589881 70 13204 561854 2.30 575058 71 17305 552396 3.04 569701 72 12392 537777 2.25 550169 73 14251 525231 2.64 539482 74 17260 516491 3.23 533751 75 12235 506338 2.36 518573 76 14580 491889 2.88 506469 77 14731 481428 2.97 496159 78 10875 472223 2.25 483098 79 14015 461050 2.95 475065 80 13642 450557 2.94 464199 81 11038 440018 2.45 451056 82 12250 431796 2.76 444046 83 14190 421508 3.26 435698 84 12414 415441 2.90 427855 85 12001 408415 2.85 420416 86 12605 400248 3.05 412853 87 10553 390786 2.63 401339 88 10442 380036 2.67 390478 89 14336 372238 3.71 386574 90 8585 364233 2.30 372818 91 10279 354569 2.82 364848 92 11646 348350 3.24 359996 93 9955 339867 2.85 349822 94 12199 335628 3.51 347827 95 10353 328625 3.05 338978 96 8575 320841 2.60 329416 97 9678 312709 3.00 322387 98 10640 307010 3.35 317650 99 9309 298461 3.02 307770 100 8219 293095 2.73 301314 101 10230 287492 3.44 297722 102 8222 281711 2.84 289933 103 9620 277801 3.35 287421 104 10194 273275 3.60 283469 105 6821 267214 2.49 274035 106 8167 261701 3.03 269868 107 9958 254740 3.76 264698 108 6501 247753 2.56 254254 109 8558 241472 3.42 250030 110 8114 236900 3.31 245014 111 6984 231965 2.92 238949 112 8143 228013 3.45 236156 113 8091 224662 3.48 232753 114 7082 220773 3.11 227855 115 6428 215455 2.90 221883 116 8065 210532 3.69 218597 117 6191 203895 2.95 210086 118 6335 200279 3.07 206614 119 8044 196757 3.93 204801 120 5544 192872 2.79 198416 121 6811 188383 3.49 195194 122 6492 186858 3.36 193350 123 5722 182157 3.05 187879 124 6508 179356 3.50 185864 125 6462 175036 3.56 181498 126 5063 169670 2.90 174733 127 5909 166172 3.43 172081 128 6000 163354 3.54 169354 129 5646 160200 3.40 165846 130 5235 155679 3.25 160914 131 5534 153017 3.49 158551 132 4529 150287 2.93 154816 133 4954 146752 3.27 151706 134 6060 144536 4.02 150596 135 4053 140592 2.80 144645 136 4704 137269 3.31 141973 137 5229 134483 3.74 139712 138 4045 131798 2.98 135843 139 5078 129874 3.76 134952 140 4170 126909 3.18 131079 141 3723 124073 2.91 127796 142 4022 121799 3.20 125821 143 4760 119725 3.82 124485 144 3834 116478 3.19 120312 145 3554 113410 3.04 116964 146 4126 111731 3.56 115857 147 3650 109953 3.21 113603 148 3629 107450 3.27 111079 149 4000 104655 3.68 108655 150 2505 100381 2.43 102886 151 2540 81707 3.01 84247