[2025-05-01 08:21:50,653] multiqc [DEBUG ] This is MultiQC v1.12 [2025-05-01 08:21:50,654] multiqc [DEBUG ] No MultiQC config found: /modules/uri_apps/software/MultiQC/1.12-foss-2021b/lib/python3.9/site-packages/multiqc_config.yaml [2025-05-01 08:21:50,656] multiqc [DEBUG ] No MultiQC config found: /home/zdellaert_uri_edu/.multiqc_config.yaml [2025-05-01 08:21:50,656] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2025-05-01 08:21:50,656] multiqc [DEBUG ] Command used: /modules/uri_apps/software/MultiQC/1.12-foss-2021b/bin/multiqc . [2025-05-01 08:21:51,191] multiqc [WARNING] MultiQC Version v1.28 now available! [2025-05-01 08:21:51,191] multiqc [DEBUG ] Command : /modules/uri_apps/software/MultiQC/1.12-foss-2021b/bin/multiqc . [2025-05-01 08:21:51,191] multiqc [DEBUG ] Working dir : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/E-Peve/output/12-Peve-WGBS/bismark_cutadapt [2025-05-01 08:21:51,191] multiqc [DEBUG ] Template : default [2025-05-01 08:21:51,191] multiqc [DEBUG ] Running Python 3.9.6 (default, Nov 15 2024, 16:57:16) [GCC 11.2.0] [2025-05-01 08:21:51,191] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap [2025-05-01 08:21:51,192] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpsn9dwfne [2025-05-01 08:21:51,416] multiqc [INFO ] Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/E-Peve/output/12-Peve-WGBS/bismark_cutadapt [2025-05-01 08:21:51,445] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: POR-79-TP2_S10.sorted.bam [2025-05-01 08:21:51,456] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7-bismark_summary.txt [2025-05-01 08:21:51,457] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7-bismark_summary.txt [2025-05-01 08:21:51,457] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7-bismark_summary.txt [2025-05-01 08:21:51,459] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7-bismark_summary.txt [2025-05-01 08:21:51,459] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7-bismark_summary.txt [2025-05-01 08:21:51,459] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7-bismark_summary.txt [2025-05-01 08:21:51,459] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7-bismark_summary.txt [2025-05-01 08:21:51,459] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7-bismark_summary.txt [2025-05-01 08:21:51,459] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7-bismark_summary.txt [2025-05-01 08:21:51,459] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7-bismark_summary.txt [2025-05-01 08:21:51,459] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7-bismark_summary.txt [2025-05-01 08:21:51,466] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7-bismark_summary.txt [2025-05-01 08:21:51,630] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7-bismark_summary.txt [2025-05-01 08:21:51,641] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_POR-71-TP2_S9_pe.deduplicated.bam [2025-05-01 08:21:51,641] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: POR-82-TP2_S8.sorted.bam [2025-05-01 08:21:51,641] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_POR-76-TP2_S6_pe.deduplicated.bam [2025-05-01 08:21:51,641] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_POR-82-TP2_S8_pe.deduplicated.bam [2025-05-01 08:21:51,642] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_POR-71-TP2_S9_pe.bam [2025-05-01 08:21:51,646] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: POR-73-TP2_S7.cytosine_context_summary.txt [2025-05-01 08:21:51,647] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: POR-73-TP2_S7.cytosine_context_summary.txt [2025-05-01 08:21:51,672] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_PE_report.html [2025-05-01 08:21:51,672] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_PE_report.html [2025-05-01 08:21:51,672] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_PE_report.html [2025-05-01 08:21:51,674] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_PE_report.html [2025-05-01 08:21:51,674] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_PE_report.html [2025-05-01 08:21:51,674] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_PE_report.html [2025-05-01 08:21:51,674] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_PE_report.html [2025-05-01 08:21:51,674] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_PE_report.html [2025-05-01 08:21:51,674] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_PE_report.html [2025-05-01 08:21:51,674] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_PE_report.html [2025-05-01 08:21:51,674] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_PE_report.html [2025-05-01 08:21:51,679] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_PE_report.html [2025-05-01 08:21:51,947] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_PE_report.html [2025-05-01 08:21:51,966] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: POR-82-TP2_S8.cytosine_context_summary.txt [2025-05-01 08:21:51,966] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: POR-82-TP2_S8.cytosine_context_summary.txt [2025-05-01 08:21:51,975] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8-bismark_summary.txt [2025-05-01 08:21:51,976] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8-bismark_summary.txt [2025-05-01 08:21:51,976] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8-bismark_summary.txt [2025-05-01 08:21:51,977] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8-bismark_summary.txt [2025-05-01 08:21:51,977] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8-bismark_summary.txt [2025-05-01 08:21:51,977] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8-bismark_summary.txt [2025-05-01 08:21:51,978] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8-bismark_summary.txt [2025-05-01 08:21:51,978] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8-bismark_summary.txt [2025-05-01 08:21:51,978] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8-bismark_summary.txt [2025-05-01 08:21:51,978] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8-bismark_summary.txt [2025-05-01 08:21:51,978] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8-bismark_summary.txt [2025-05-01 08:21:51,989] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8-bismark_summary.txt [2025-05-01 08:21:52,223] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8-bismark_summary.txt [2025-05-01 08:21:52,241] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6-bismark_summary.txt [2025-05-01 08:21:52,242] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6-bismark_summary.txt [2025-05-01 08:21:52,242] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6-bismark_summary.txt [2025-05-01 08:21:52,243] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6-bismark_summary.txt [2025-05-01 08:21:52,243] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6-bismark_summary.txt [2025-05-01 08:21:52,243] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6-bismark_summary.txt [2025-05-01 08:21:52,243] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6-bismark_summary.txt [2025-05-01 08:21:52,243] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6-bismark_summary.txt [2025-05-01 08:21:52,243] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6-bismark_summary.txt [2025-05-01 08:21:52,243] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6-bismark_summary.txt [2025-05-01 08:21:52,243] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6-bismark_summary.txt [2025-05-01 08:21:52,250] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6-bismark_summary.txt [2025-05-01 08:21:52,416] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6-bismark_summary.txt [2025-05-01 08:21:52,431] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9-bismark_summary.txt [2025-05-01 08:21:52,431] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9-bismark_summary.txt [2025-05-01 08:21:52,432] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9-bismark_summary.txt [2025-05-01 08:21:52,433] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9-bismark_summary.txt [2025-05-01 08:21:52,433] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9-bismark_summary.txt [2025-05-01 08:21:52,433] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9-bismark_summary.txt [2025-05-01 08:21:52,433] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9-bismark_summary.txt [2025-05-01 08:21:52,433] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9-bismark_summary.txt [2025-05-01 08:21:52,433] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9-bismark_summary.txt [2025-05-01 08:21:52,433] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9-bismark_summary.txt [2025-05-01 08:21:52,433] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9-bismark_summary.txt [2025-05-01 08:21:52,443] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9-bismark_summary.txt [2025-05-01 08:21:52,696] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9-bismark_summary.txt [2025-05-01 08:21:52,711] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: POR-73-TP2_S7.sorted.bam [2025-05-01 08:21:52,711] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_POR-79-TP2_S10_pe.bam [2025-05-01 08:21:52,711] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_POR-73-TP2_S7_pe.deduplicated.bam [2025-05-01 08:21:52,711] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: POR-76-TP2_S6.sorted.bam [2025-05-01 08:21:52,714] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: POR-76-TP2_S6.cytosine_context_summary.txt [2025-05-01 08:21:52,715] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: POR-76-TP2_S6.cytosine_context_summary.txt [2025-05-01 08:21:52,720] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_POR-76-TP2_S6_pe.bam [2025-05-01 08:21:52,736] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_PE_report.html [2025-05-01 08:21:52,736] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_PE_report.html [2025-05-01 08:21:52,737] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_PE_report.html [2025-05-01 08:21:52,738] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_PE_report.html [2025-05-01 08:21:52,738] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_PE_report.html [2025-05-01 08:21:52,738] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_PE_report.html [2025-05-01 08:21:52,738] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_PE_report.html [2025-05-01 08:21:52,738] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_PE_report.html [2025-05-01 08:21:52,738] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_PE_report.html [2025-05-01 08:21:52,738] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_PE_report.html [2025-05-01 08:21:52,738] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_PE_report.html [2025-05-01 08:21:52,744] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_PE_report.html [2025-05-01 08:21:53,013] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_PE_report.html [2025-05-01 08:21:53,037] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: POR-71-TP2_S9.sorted.bam [2025-05-01 08:21:53,041] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10-bismark_summary.txt [2025-05-01 08:21:53,042] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10-bismark_summary.txt [2025-05-01 08:21:53,042] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10-bismark_summary.txt [2025-05-01 08:21:53,044] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10-bismark_summary.txt [2025-05-01 08:21:53,044] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10-bismark_summary.txt [2025-05-01 08:21:53,044] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10-bismark_summary.txt [2025-05-01 08:21:53,044] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10-bismark_summary.txt [2025-05-01 08:21:53,044] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10-bismark_summary.txt [2025-05-01 08:21:53,044] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10-bismark_summary.txt [2025-05-01 08:21:53,044] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10-bismark_summary.txt [2025-05-01 08:21:53,044] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10-bismark_summary.txt [2025-05-01 08:21:53,055] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10-bismark_summary.txt [2025-05-01 08:21:53,324] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10-bismark_summary.txt [2025-05-01 08:21:53,339] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_POR-82-TP2_S8_pe.bam [2025-05-01 08:21:53,343] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: bismark_summary_report.txt [2025-05-01 08:21:53,343] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: bismark_summary_report.txt [2025-05-01 08:21:53,347] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_POR-73-TP2_S7_pe.bam [2025-05-01 08:21:53,356] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_PE_report.html [2025-05-01 08:21:53,357] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_PE_report.html [2025-05-01 08:21:53,357] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_PE_report.html [2025-05-01 08:21:53,358] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_PE_report.html [2025-05-01 08:21:53,358] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_PE_report.html [2025-05-01 08:21:53,358] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_PE_report.html [2025-05-01 08:21:53,358] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_PE_report.html [2025-05-01 08:21:53,358] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_PE_report.html [2025-05-01 08:21:53,358] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_PE_report.html [2025-05-01 08:21:53,358] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_PE_report.html [2025-05-01 08:21:53,358] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_PE_report.html [2025-05-01 08:21:53,364] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_PE_report.html [2025-05-01 08:21:53,630] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_PE_report.html [2025-05-01 08:21:53,649] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: POR-79-TP2_S10.cytosine_context_summary.txt [2025-05-01 08:21:53,650] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: POR-79-TP2_S10.cytosine_context_summary.txt [2025-05-01 08:21:53,662] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_PE_report.html [2025-05-01 08:21:53,663] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_PE_report.html [2025-05-01 08:21:53,663] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_PE_report.html [2025-05-01 08:21:53,664] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_PE_report.html [2025-05-01 08:21:53,664] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_PE_report.html [2025-05-01 08:21:53,664] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_PE_report.html [2025-05-01 08:21:53,664] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_PE_report.html [2025-05-01 08:21:53,664] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_PE_report.html [2025-05-01 08:21:53,664] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_PE_report.html [2025-05-01 08:21:53,664] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_PE_report.html [2025-05-01 08:21:53,664] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_PE_report.html [2025-05-01 08:21:53,670] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_PE_report.html [2025-05-01 08:21:53,934] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_PE_report.html [2025-05-01 08:21:53,953] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: POR-71-TP2_S9.cytosine_context_summary.txt [2025-05-01 08:21:53,954] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: POR-71-TP2_S9.cytosine_context_summary.txt [2025-05-01 08:21:53,958] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_POR-79-TP2_S10_pe.deduplicated.bam [2025-05-01 08:21:53,966] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-05-01 08:21:53,967] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-05-01 08:21:53,967] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-05-01 08:21:53,974] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-05-01 08:21:53,974] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-05-01 08:21:53,974] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-05-01 08:21:53,974] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-05-01 08:21:53,974] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-05-01 08:21:53,974] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-05-01 08:21:53,974] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-05-01 08:21:53,974] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-05-01 08:21:53,979] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-05-01 08:21:54,242] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-05-01 08:21:54,265] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_PE_report.html [2025-05-01 08:21:54,266] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_PE_report.html [2025-05-01 08:21:54,266] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_PE_report.html [2025-05-01 08:21:54,267] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_PE_report.html [2025-05-01 08:21:54,267] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_PE_report.html [2025-05-01 08:21:54,268] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_PE_report.html [2025-05-01 08:21:54,268] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_PE_report.html [2025-05-01 08:21:54,268] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_PE_report.html [2025-05-01 08:21:54,268] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_PE_report.html [2025-05-01 08:21:54,268] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_PE_report.html [2025-05-01 08:21:54,268] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_PE_report.html [2025-05-01 08:21:54,273] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_PE_report.html [2025-05-01 08:21:54,546] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_PE_report.html [2025-05-01 08:21:54,565] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:54,565] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:54,565] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:54,567] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:54,567] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:54,567] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:54,567] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:54,567] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:54,567] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:54,567] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:54,567] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:54,577] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:55,092] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:55,137] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: doctools.js [2025-05-01 08:21:55,138] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: doctools.js [2025-05-01 08:21:55,138] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: doctools.js [2025-05-01 08:21:55,139] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: doctools.js [2025-05-01 08:21:55,144] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: doctools.js [2025-05-01 08:21:55,147] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: underscore.js [2025-05-01 08:21:55,148] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: underscore.js [2025-05-01 08:21:55,148] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: underscore.js [2025-05-01 08:21:55,149] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: underscore.js [2025-05-01 08:21:55,152] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: underscore.js [2025-05-01 08:21:55,154] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pygments.css [2025-05-01 08:21:55,155] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pygments.css [2025-05-01 08:21:55,157] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pygments.css [2025-05-01 08:21:55,163] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 08:21:55,163] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 08:21:55,163] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 08:21:55,165] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 08:21:55,173] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 08:21:55,176] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: jquery.js [2025-05-01 08:21:55,177] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: jquery.js [2025-05-01 08:21:55,177] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: jquery.js [2025-05-01 08:21:55,178] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: jquery.js [2025-05-01 08:21:55,185] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: jquery.js [2025-05-01 08:21:55,188] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: websupport.js [2025-05-01 08:21:55,189] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: websupport.js [2025-05-01 08:21:55,189] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: websupport.js [2025-05-01 08:21:55,191] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: websupport.js [2025-05-01 08:21:55,202] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: websupport.js [2025-05-01 08:21:55,215] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: agogo.css [2025-05-01 08:21:55,216] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: agogo.css [2025-05-01 08:21:55,216] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: agogo.css [2025-05-01 08:21:55,217] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: agogo.css [2025-05-01 08:21:55,224] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: agogo.css [2025-05-01 08:21:55,229] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: basic.css [2025-05-01 08:21:55,230] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: basic.css [2025-05-01 08:21:55,230] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: basic.css [2025-05-01 08:21:55,232] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: basic.css [2025-05-01 08:21:55,239] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: basic.css [2025-05-01 08:21:55,263] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 08:21:55,264] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 08:21:55,264] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 08:21:55,265] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 08:21:55,269] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 08:21:55,272] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 08:21:55,273] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 08:21:55,273] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 08:21:55,274] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 08:21:55,274] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 08:21:55,368] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 08:21:55,375] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 08:21:55,376] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 08:21:55,376] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 08:21:55,377] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 08:21:55,377] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 08:21:55,470] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 08:21:55,484] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 08:21:55,485] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 08:21:55,485] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 08:21:55,486] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 08:21:55,486] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 08:21:55,580] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 08:21:55,597] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:55,597] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:55,597] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:55,599] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:55,599] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:55,599] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:55,599] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:55,599] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:55,599] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:55,599] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:55,599] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:55,609] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:56,125] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:56,159] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 08:21:56,160] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 08:21:56,160] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 08:21:56,161] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 08:21:56,165] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 08:21:56,169] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 08:21:56,170] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 08:21:56,170] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 08:21:56,171] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 08:21:56,171] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 08:21:56,266] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 08:21:56,294] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 08:21:56,295] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 08:21:56,295] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 08:21:56,297] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 08:21:56,297] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 08:21:56,391] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 08:21:56,398] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 08:21:56,399] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 08:21:56,399] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 08:21:56,400] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 08:21:56,401] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 08:21:56,495] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 08:21:56,504] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: agogo.css [2025-05-01 08:21:56,504] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: agogo.css [2025-05-01 08:21:56,505] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: agogo.css [2025-05-01 08:21:56,506] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: agogo.css [2025-05-01 08:21:56,513] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: agogo.css [2025-05-01 08:21:56,515] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: underscore.js [2025-05-01 08:21:56,516] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: underscore.js [2025-05-01 08:21:56,516] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: underscore.js [2025-05-01 08:21:56,518] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: underscore.js [2025-05-01 08:21:56,520] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: underscore.js [2025-05-01 08:21:56,523] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: basic.css [2025-05-01 08:21:56,523] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: basic.css [2025-05-01 08:21:56,524] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: basic.css [2025-05-01 08:21:56,525] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: basic.css [2025-05-01 08:21:56,533] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: basic.css [2025-05-01 08:21:56,535] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pygments.css [2025-05-01 08:21:56,536] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pygments.css [2025-05-01 08:21:56,537] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pygments.css [2025-05-01 08:21:56,545] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 08:21:56,546] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 08:21:56,546] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 08:21:56,547] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 08:21:56,556] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 08:21:56,565] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: doctools.js [2025-05-01 08:21:56,566] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: doctools.js [2025-05-01 08:21:56,566] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: doctools.js [2025-05-01 08:21:56,567] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: doctools.js [2025-05-01 08:21:56,572] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: doctools.js [2025-05-01 08:21:56,584] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: jquery.js [2025-05-01 08:21:56,584] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: jquery.js [2025-05-01 08:21:56,585] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: jquery.js [2025-05-01 08:21:56,586] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: jquery.js [2025-05-01 08:21:56,593] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: jquery.js [2025-05-01 08:21:56,596] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: websupport.js [2025-05-01 08:21:56,597] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: websupport.js [2025-05-01 08:21:56,597] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: websupport.js [2025-05-01 08:21:56,598] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: websupport.js [2025-05-01 08:21:56,610] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: websupport.js [2025-05-01 08:21:56,632] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:56,633] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:56,633] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:56,634] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:56,634] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:56,634] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:56,634] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:56,634] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:56,634] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:56,634] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:56,634] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:56,645] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:57,168] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:57,201] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: underscore.js [2025-05-01 08:21:57,202] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: underscore.js [2025-05-01 08:21:57,202] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: underscore.js [2025-05-01 08:21:57,204] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: underscore.js [2025-05-01 08:21:57,206] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: underscore.js [2025-05-01 08:21:57,209] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 08:21:57,210] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 08:21:57,210] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 08:21:57,211] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 08:21:57,220] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 08:21:57,225] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: jquery.js [2025-05-01 08:21:57,226] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: jquery.js [2025-05-01 08:21:57,226] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: jquery.js [2025-05-01 08:21:57,227] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: jquery.js [2025-05-01 08:21:57,234] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: jquery.js [2025-05-01 08:21:57,249] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: agogo.css [2025-05-01 08:21:57,250] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: agogo.css [2025-05-01 08:21:57,250] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: agogo.css [2025-05-01 08:21:57,251] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: agogo.css [2025-05-01 08:21:57,258] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: agogo.css [2025-05-01 08:21:57,263] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: basic.css [2025-05-01 08:21:57,263] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: basic.css [2025-05-01 08:21:57,264] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: basic.css [2025-05-01 08:21:57,265] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: basic.css [2025-05-01 08:21:57,273] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: basic.css [2025-05-01 08:21:57,275] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pygments.css [2025-05-01 08:21:57,276] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pygments.css [2025-05-01 08:21:57,277] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pygments.css [2025-05-01 08:21:57,286] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: websupport.js [2025-05-01 08:21:57,287] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: websupport.js [2025-05-01 08:21:57,287] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: websupport.js [2025-05-01 08:21:57,288] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: websupport.js [2025-05-01 08:21:57,300] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: websupport.js [2025-05-01 08:21:57,303] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: doctools.js [2025-05-01 08:21:57,304] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: doctools.js [2025-05-01 08:21:57,304] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: doctools.js [2025-05-01 08:21:57,305] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: doctools.js [2025-05-01 08:21:57,310] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: doctools.js [2025-05-01 08:21:57,337] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 08:21:57,338] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 08:21:57,338] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 08:21:57,339] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 08:21:57,339] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 08:21:57,435] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 08:21:57,444] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 08:21:57,445] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 08:21:57,445] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 08:21:57,446] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 08:21:57,446] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 08:21:57,541] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 08:21:57,549] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 08:21:57,550] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 08:21:57,550] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 08:21:57,552] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 08:21:57,552] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 08:21:57,648] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 08:21:57,672] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 08:21:57,673] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 08:21:57,673] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 08:21:57,675] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 08:21:57,679] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 08:21:57,682] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:57,683] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:57,683] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:57,684] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:57,684] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:57,684] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:57,684] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:57,684] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:57,684] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:57,684] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:57,684] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:57,695] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:58,211] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:58,261] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: doctools.js [2025-05-01 08:21:58,262] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: doctools.js [2025-05-01 08:21:58,262] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: doctools.js [2025-05-01 08:21:58,263] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: doctools.js [2025-05-01 08:21:58,268] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: doctools.js [2025-05-01 08:21:58,272] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: underscore.js [2025-05-01 08:21:58,273] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: underscore.js [2025-05-01 08:21:58,273] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: underscore.js [2025-05-01 08:21:58,274] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: underscore.js [2025-05-01 08:21:58,277] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: underscore.js [2025-05-01 08:21:58,281] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 08:21:58,282] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 08:21:58,282] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 08:21:58,283] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 08:21:58,292] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 08:21:58,302] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: jquery.js [2025-05-01 08:21:58,303] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: jquery.js [2025-05-01 08:21:58,303] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: jquery.js [2025-05-01 08:21:58,305] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: jquery.js [2025-05-01 08:21:58,311] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: jquery.js [2025-05-01 08:21:58,322] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: websupport.js [2025-05-01 08:21:58,322] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: websupport.js [2025-05-01 08:21:58,322] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: websupport.js [2025-05-01 08:21:58,324] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: websupport.js [2025-05-01 08:21:58,335] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: websupport.js [2025-05-01 08:21:58,348] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: agogo.css [2025-05-01 08:21:58,349] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: agogo.css [2025-05-01 08:21:58,349] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: agogo.css [2025-05-01 08:21:58,350] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: agogo.css [2025-05-01 08:21:58,357] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: agogo.css [2025-05-01 08:21:58,362] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: basic.css [2025-05-01 08:21:58,363] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: basic.css [2025-05-01 08:21:58,363] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: basic.css [2025-05-01 08:21:58,364] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: basic.css [2025-05-01 08:21:58,372] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: basic.css [2025-05-01 08:21:58,378] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pygments.css [2025-05-01 08:21:58,379] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pygments.css [2025-05-01 08:21:58,380] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pygments.css [2025-05-01 08:21:58,386] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 08:21:58,387] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 08:21:58,387] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 08:21:58,389] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 08:21:58,393] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 08:21:58,404] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 08:21:58,405] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 08:21:58,405] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 08:21:58,407] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 08:21:58,407] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 08:21:58,502] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 08:21:58,517] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 08:21:58,518] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 08:21:58,518] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 08:21:58,520] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 08:21:58,520] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 08:21:58,615] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 08:21:58,623] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 08:21:58,624] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 08:21:58,624] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 08:21:58,625] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 08:21:58,625] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 08:21:58,721] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 08:21:58,735] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:58,736] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:58,736] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:58,737] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:58,737] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:58,738] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:58,738] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:58,738] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:58,738] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:58,738] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:58,738] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:58,748] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:59,284] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 08:21:59,338] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: basic.css [2025-05-01 08:21:59,339] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: basic.css [2025-05-01 08:21:59,339] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: basic.css [2025-05-01 08:21:59,340] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: basic.css [2025-05-01 08:21:59,348] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: basic.css [2025-05-01 08:21:59,354] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: agogo.css [2025-05-01 08:21:59,355] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: agogo.css [2025-05-01 08:21:59,355] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: agogo.css [2025-05-01 08:21:59,356] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: agogo.css [2025-05-01 08:21:59,363] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: agogo.css [2025-05-01 08:21:59,366] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 08:21:59,367] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 08:21:59,367] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 08:21:59,368] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 08:21:59,377] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 08:21:59,380] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: websupport.js [2025-05-01 08:21:59,381] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: websupport.js [2025-05-01 08:21:59,381] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: websupport.js [2025-05-01 08:21:59,382] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: websupport.js [2025-05-01 08:21:59,394] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: websupport.js [2025-05-01 08:21:59,398] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: doctools.js [2025-05-01 08:21:59,399] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: doctools.js [2025-05-01 08:21:59,399] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: doctools.js [2025-05-01 08:21:59,401] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: doctools.js [2025-05-01 08:21:59,405] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: doctools.js [2025-05-01 08:21:59,410] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pygments.css [2025-05-01 08:21:59,410] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pygments.css [2025-05-01 08:21:59,412] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pygments.css [2025-05-01 08:21:59,422] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: jquery.js [2025-05-01 08:21:59,422] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: jquery.js [2025-05-01 08:21:59,422] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: jquery.js [2025-05-01 08:21:59,424] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: jquery.js [2025-05-01 08:21:59,431] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: jquery.js [2025-05-01 08:21:59,433] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: underscore.js [2025-05-01 08:21:59,434] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: underscore.js [2025-05-01 08:21:59,434] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: underscore.js [2025-05-01 08:21:59,436] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: underscore.js [2025-05-01 08:21:59,438] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: underscore.js [2025-05-01 08:21:59,453] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 08:21:59,454] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 08:21:59,454] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 08:21:59,455] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 08:21:59,455] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 08:21:59,550] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 08:21:59,558] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 08:21:59,558] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 08:21:59,559] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 08:21:59,560] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 08:21:59,560] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 08:21:59,656] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 08:21:59,679] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 08:21:59,680] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 08:21:59,680] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 08:21:59,681] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 08:21:59,686] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 08:21:59,697] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 08:21:59,698] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 08:21:59,698] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 08:21:59,699] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 08:21:59,699] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 08:21:59,793] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 08:22:02,669] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2025-05-01 08:22:02,680] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2025-05-01 08:22:02,744] multiqc.modules.qualimap.QM_BamQC [DEBUG ] Using default Qualimap thresholds: 1, 5, 10, 30, 50 [2025-05-01 08:22:02,793] multiqc.modules.qualimap.qualimap [INFO ] Found 5 BamQC reports [2025-05-01 08:22:02,829] multiqc.modules.bismark.bismark [INFO ] Found 5 alignment reports [2025-05-01 08:22:02,830] multiqc.modules.bismark.bismark [INFO ] Found 5 dedup reports [2025-05-01 08:22:02,831] multiqc.modules.bismark.bismark [INFO ] Found 5 methextract reports [2025-05-01 08:22:02,837] multiqc.modules.bismark.bismark [INFO ] Found 5 bismark bam2nuc reports [2025-05-01 08:22:02,851] multiqc [INFO ] Compressing plot data [2025-05-01 08:22:03,004] multiqc [INFO ] Report : multiqc_report.html [2025-05-01 08:22:03,005] multiqc [INFO ] Data : multiqc_data [2025-05-01 08:22:03,005] multiqc [DEBUG ] Moving data file from '/tmp/tmpsn9dwfne/multiqc_data' to '/scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/E-Peve/output/12-Peve-WGBS/bismark_cutadapt/multiqc_data' [2025-05-01 08:22:03,412] multiqc [INFO ] MultiQC complete