File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated chgs	Unmethylated chgs	Methylated CHHs	Unmethylated CHHs
trimmed_POR-71-TP2_S9_pe.bam	236709796	132035239	66375041	38281851	17665	24573139	107462100	2314697606	30238412	390301061	8421891	441271557	41618998	1402845687
trimmed_POR-73-TP2_S7_pe.bam	102561868	61668958	29688557	11192997	11356	47285711	14383247	449342456	5790052	69188241	1701285	81592316	8600637	282469925
trimmed_POR-76-TP2_S6_pe.bam	173500998	98534489	43820661	31134087	11761	25084139	73450350	1563269175	18525723	271414926	6905820	297821632	30157664	938443410
trimmed_POR-79-TP2_S10_pe.bam	267531009	147038994	79040089	41432846	19080	33961586	113077408	2526322290	33647330	421628284	9413140	477529177	45509301	1538595058
trimmed_POR-82-TP2_S8_pe.bam	263184807	133941347	77559917	51666867	16676	44605624	89335723	1938975922	24665807	319850362	7386930	362421754	36739576	1187911493