FastQCFastQC Report
Thu 10 Apr 2025
trimmed_POR-82-TP2_S8_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenametrimmed_POR-82-TP2_S8_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences263184807
Total Bases25.2 Gbp
Sequences flagged as poor quality0
Sequence length20-151
%GC25

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTGGTCGCCGTATCATTAGG21843480.8299673620597713No Hit
CGGTGGTCGCCGTATCATTAGGA16696520.6344028817742507No Hit
CGGTGGTCGCCGTATCATTAGGG12352760.46935688046764795No Hit
CGGTGGTCGCCGTATCATTAGGT11143060.42339298103936523No Hit
CGGTGGTCGCCGTATCATTAGGC8755840.3326878971398983No Hit
CGGTGGTCGCCGTATCATTAAG8693790.330330238249657No Hit
CGGTGGTCGCCGTATCATTA8321370.316179725374497No Hit
CGGTGGTCGCCGTATCATTAGT8296370.3152298225178325No Hit
CGGTGGTCGCCGTATCATTAGA7750780.29449952253512873No Hit
CGGTGGTCGCCGTATCATTAGAG7056990.26813819841811765No Hit
CGGTGGTCGCCGTATCATTAG5406030.20540813360856353No Hit
CCTGGATACCTCTGGGCCATACACTCTTTCCCTAC5214400.19812693823165864No Hit
CGGTGGTCGCCGTATCATTAGC4727480.17962587027297514No Hit
CGGTGGTCGCCGTATCATTAAGG4665690.1772780903724431No Hit
CGGTGGTCGCCGTATCATTAC4510260.17137235433198847No Hit
CGGTGGTCGCCGTATCATTAGAC4315890.16398704960199317No Hit
CGGTGGTCGCCGTATCATTAGAA4081920.15509709874704128No Hit
CGGTGGTCGCCGTATCATTACGG3940850.14973698690745474No Hit
CGGTGGTCGCCGTATCATTAAC3573750.13578861336019293No Hit
CGGTGGTCGCCGTATCATTAGAT3549320.13486036828866038No Hit
CGGTGGTCGCCGTATCATTAGTA3540510.13452562252197178No Hit
CGGTGGTCGCCGTATCATTAAGA3513340.1334932680973488No Hit
CGGTGGTCGCCGTATCATTAGTG3069230.11661881379041762No Hit
CCTGGATACCTCTGGGCCATAACACTCTTTCCCTAC2849050.10825282935120187No Hit
CGGTGGTCGCCGTATCATTACA2835360.10773266254689239No Hit
CGGTGGTCGCCGTATCATTACT2784130.10578612161301545No Hit
CGGTGGTCGCCGTATCATTAGCA2676370.10169166033964872No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)