FastQCFastQC Report
Thu 10 Apr 2025
trimmed_POR-79-TP2_S10_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenametrimmed_POR-79-TP2_S10_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences267531009
Total Bases29.9 Gbp
Sequences flagged as poor quality0
Sequence length20-151
%GC25

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8735100.32650794510329084No Hit
CCTAATGATACGGCGACCACCG5172770.19335216576707187No Hit
TCCTAATGATACGGCGACCACCG4219560.15772227734542726No Hit
CCCTAATGATACGGCGACCACCG3032420.11334835581620373No Hit
ACCTAATGATACGGCGACCACCG2732070.10212161985304666No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)