FastQCFastQC Report
Thu 10 Apr 2025
trimmed_POR-79-TP2_S10_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenametrimmed_POR-79-TP2_S10_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences267531009
Total Bases29.4 Gbp
Sequences flagged as poor quality0
Sequence length20-151
%GC24

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTGGTCGCCGTATCATTAGG7657970.2862460702639521No Hit
CGGTGGTCGCCGTATCATTAGGA5913360.22103456425868No Hit
CGGTGGTCGCCGTATCATTAGGG4368010.1632711668201423No Hit
CGGTGGTCGCCGTATCATTAGGT3900760.14580590170016516No Hit
CGGTGGTCGCCGTATCATTAGGC3200730.11963958914385135No Hit
CGGTGGTCGCCGTATCATTAAG3017070.11277459055223016No Hit
CGGTGGTCGCCGTATCATTAGT2790040.10428847147210513No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)