FastQCFastQC Report
Thu 10 Apr 2025
trimmed_POR-76-TP2_S6_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenametrimmed_POR-76-TP2_S6_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences173500998
Total Bases18 Gbp
Sequences flagged as poor quality0
Sequence length20-151
%GC27

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8380830.48304217823577017No Hit
CCTAATGATACGGCGACCACCG2385670.13750180272738258No Hit
TCCTAATGATACGGCGACCACCG2381490.1372608819229962No Hit
TAATGATACGGCGACCACCG2062210.11885868229991392No Hit
CTTAATGATACGGCGACCACCG1950910.11244373360895596No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)