FastQCFastQC Report
Thu 10 Apr 2025
trimmed_POR-71-TP2_S9_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenametrimmed_POR-71-TP2_S9_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences236709796
Total Bases25.8 Gbp
Sequences flagged as poor quality0
Sequence length20-151
%GC25

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8729300.3687764573968033No Hit
CCTAATGATACGGCGACCACCG4273220.1805256931572025No Hit
TCCTAATGATACGGCGACCACCG3332130.14076857216335906No Hit
CCCTAATGATACGGCGACCACCG2413270.10195057580126511No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)