[2025-04-30 20:07:30,108] multiqc [DEBUG ] This is MultiQC v1.12 [2025-04-30 20:07:30,109] multiqc [DEBUG ] No MultiQC config found: /modules/uri_apps/software/MultiQC/1.12-foss-2021b/lib/python3.9/site-packages/multiqc_config.yaml [2025-04-30 20:07:30,110] multiqc [DEBUG ] No MultiQC config found: /home/zdellaert_uri_edu/.multiqc_config.yaml [2025-04-30 20:07:30,110] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2025-04-30 20:07:30,110] multiqc [DEBUG ] Command used: /modules/uri_apps/software/MultiQC/1.12-foss-2021b/bin/multiqc . [2025-04-30 20:07:30,535] multiqc [WARNING] MultiQC Version v1.28 now available! [2025-04-30 20:07:30,535] multiqc [DEBUG ] Command : /modules/uri_apps/software/MultiQC/1.12-foss-2021b/bin/multiqc . [2025-04-30 20:07:30,535] multiqc [DEBUG ] Working dir : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/D-Apul/output/08-Apul-WGBS/bismark_cutadapt [2025-04-30 20:07:30,535] multiqc [DEBUG ] Template : default [2025-04-30 20:07:30,535] multiqc [DEBUG ] Running Python 3.9.6 (default, Nov 15 2024, 16:57:16) [GCC 11.2.0] [2025-04-30 20:07:30,535] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap [2025-04-30 20:07:30,536] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpo9cw19pz [2025-04-30 20:07:30,771] multiqc [INFO ] Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/D-Apul/output/08-Apul-WGBS/bismark_cutadapt [2025-04-30 20:07:30,794] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_ACR-178-TP2_S1_pe.deduplicated.bam [2025-04-30 20:07:30,804] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: ACR-140-TP2_S5.cytosine_context_summary.txt [2025-04-30 20:07:30,805] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: ACR-140-TP2_S5.cytosine_context_summary.txt [2025-04-30 20:07:30,811] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_ACR-150-TP2_S2_pe.bam [2025-04-30 20:07:30,812] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: ACR-173-TP2_S4.sorted.bam [2025-04-30 20:07:30,820] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_PE_report.html [2025-04-30 20:07:30,821] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_PE_report.html [2025-04-30 20:07:30,821] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_PE_report.html [2025-04-30 20:07:30,822] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_PE_report.html [2025-04-30 20:07:30,822] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_PE_report.html [2025-04-30 20:07:30,822] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_PE_report.html [2025-04-30 20:07:30,822] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_PE_report.html [2025-04-30 20:07:30,822] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_PE_report.html [2025-04-30 20:07:30,822] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_PE_report.html [2025-04-30 20:07:30,822] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_PE_report.html [2025-04-30 20:07:30,822] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_PE_report.html [2025-04-30 20:07:30,827] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_PE_report.html [2025-04-30 20:07:31,079] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_PE_report.html [2025-04-30 20:07:31,099] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2-bismark_summary.txt [2025-04-30 20:07:31,099] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2-bismark_summary.txt [2025-04-30 20:07:31,099] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2-bismark_summary.txt [2025-04-30 20:07:31,101] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2-bismark_summary.txt [2025-04-30 20:07:31,108] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2-bismark_summary.txt [2025-04-30 20:07:31,109] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_ACR-145-TP2_S3_pe.bam [2025-04-30 20:07:31,116] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_PE_report.html [2025-04-30 20:07:31,117] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_PE_report.html [2025-04-30 20:07:31,117] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_PE_report.html [2025-04-30 20:07:31,118] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_PE_report.html [2025-04-30 20:07:31,118] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_PE_report.html [2025-04-30 20:07:31,118] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_PE_report.html [2025-04-30 20:07:31,118] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_PE_report.html [2025-04-30 20:07:31,119] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_PE_report.html [2025-04-30 20:07:31,119] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_PE_report.html [2025-04-30 20:07:31,119] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_PE_report.html [2025-04-30 20:07:31,119] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_PE_report.html [2025-04-30 20:07:31,124] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_PE_report.html [2025-04-30 20:07:31,377] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_PE_report.html [2025-04-30 20:07:31,393] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_ACR-140-TP2_S5_pe.bam [2025-04-30 20:07:31,393] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_ACR-150-TP2_S2_pe.deduplicated.bam [2025-04-30 20:07:31,393] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: ACR-150-TP2_S2.sorted.bam [2025-04-30 20:07:31,401] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_PE_report.html [2025-04-30 20:07:31,401] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_PE_report.html [2025-04-30 20:07:31,401] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_PE_report.html [2025-04-30 20:07:31,403] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_PE_report.html [2025-04-30 20:07:31,403] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_PE_report.html [2025-04-30 20:07:31,403] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_PE_report.html [2025-04-30 20:07:31,403] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_PE_report.html [2025-04-30 20:07:31,403] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_PE_report.html [2025-04-30 20:07:31,403] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_PE_report.html [2025-04-30 20:07:31,403] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_PE_report.html [2025-04-30 20:07:31,403] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_PE_report.html [2025-04-30 20:07:31,409] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_PE_report.html [2025-04-30 20:07:31,664] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_PE_report.html [2025-04-30 20:07:31,688] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: bismark_summary_report.txt [2025-04-30 20:07:31,689] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: bismark_summary_report.txt [2025-04-30 20:07:31,701] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_PE_report.html [2025-04-30 20:07:31,702] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_PE_report.html [2025-04-30 20:07:31,702] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_PE_report.html [2025-04-30 20:07:31,703] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_PE_report.html [2025-04-30 20:07:31,703] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_PE_report.html [2025-04-30 20:07:31,703] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_PE_report.html [2025-04-30 20:07:31,703] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_PE_report.html [2025-04-30 20:07:31,703] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_PE_report.html [2025-04-30 20:07:31,703] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_PE_report.html [2025-04-30 20:07:31,703] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_PE_report.html [2025-04-30 20:07:31,703] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_PE_report.html [2025-04-30 20:07:31,709] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_PE_report.html [2025-04-30 20:07:31,964] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_PE_report.html [2025-04-30 20:07:31,981] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: ACR-178-TP2_S1.sorted.bam [2025-04-30 20:07:31,985] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1-bismark_summary.txt [2025-04-30 20:07:31,986] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1-bismark_summary.txt [2025-04-30 20:07:31,986] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1-bismark_summary.txt [2025-04-30 20:07:31,988] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1-bismark_summary.txt [2025-04-30 20:07:31,995] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1-bismark_summary.txt [2025-04-30 20:07:32,004] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_PE_report.html [2025-04-30 20:07:32,005] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_PE_report.html [2025-04-30 20:07:32,005] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_PE_report.html [2025-04-30 20:07:32,006] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_PE_report.html [2025-04-30 20:07:32,006] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_PE_report.html [2025-04-30 20:07:32,006] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_PE_report.html [2025-04-30 20:07:32,006] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_PE_report.html [2025-04-30 20:07:32,006] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_PE_report.html [2025-04-30 20:07:32,006] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_PE_report.html [2025-04-30 20:07:32,006] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_PE_report.html [2025-04-30 20:07:32,006] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_PE_report.html [2025-04-30 20:07:32,012] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_PE_report.html [2025-04-30 20:07:32,261] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_PE_report.html [2025-04-30 20:07:32,275] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_ACR-140-TP2_S5_pe.deduplicated.bam [2025-04-30 20:07:32,276] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: ACR-140-TP2_S5.sorted.bam [2025-04-30 20:07:32,279] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: ACR-145-TP2_S3.cytosine_context_summary.txt [2025-04-30 20:07:32,280] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: ACR-145-TP2_S3.cytosine_context_summary.txt [2025-04-30 20:07:32,284] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_ACR-173-TP2_S4_pe.bam [2025-04-30 20:07:32,291] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_ACR-173-TP2_S4_pe.deduplicated.bam [2025-04-30 20:07:32,295] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3-bismark_summary.txt [2025-04-30 20:07:32,295] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3-bismark_summary.txt [2025-04-30 20:07:32,295] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3-bismark_summary.txt [2025-04-30 20:07:32,297] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3-bismark_summary.txt [2025-04-30 20:07:32,305] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3-bismark_summary.txt [2025-04-30 20:07:32,307] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: ACR-145-TP2_S3.sorted.bam [2025-04-30 20:07:32,310] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: ACR-178-TP2_S1.cytosine_context_summary.txt [2025-04-30 20:07:32,310] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: ACR-178-TP2_S1.cytosine_context_summary.txt [2025-04-30 20:07:32,315] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_ACR-145-TP2_S3_pe.deduplicated.bam [2025-04-30 20:07:32,318] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4-bismark_summary.txt [2025-04-30 20:07:32,319] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4-bismark_summary.txt [2025-04-30 20:07:32,319] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4-bismark_summary.txt [2025-04-30 20:07:32,320] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4-bismark_summary.txt [2025-04-30 20:07:32,328] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4-bismark_summary.txt [2025-04-30 20:07:32,332] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: ACR-173-TP2_S4.cytosine_context_summary.txt [2025-04-30 20:07:32,333] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: ACR-173-TP2_S4.cytosine_context_summary.txt [2025-04-30 20:07:32,337] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_ACR-178-TP2_S1_pe.bam [2025-04-30 20:07:32,341] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5-bismark_summary.txt [2025-04-30 20:07:32,341] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5-bismark_summary.txt [2025-04-30 20:07:32,342] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5-bismark_summary.txt [2025-04-30 20:07:32,343] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5-bismark_summary.txt [2025-04-30 20:07:32,352] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern 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[DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-04-30 20:07:32,368] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-04-30 20:07:32,368] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-04-30 20:07:32,368] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-04-30 20:07:32,368] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-04-30 20:07:32,374] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-04-30 20:07:32,728] multiqc [DEBUG ] File ignored by nanostat because it exceeded 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filesize limit: jquery.js [2025-04-30 20:07:33,406] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: jquery.js [2025-04-30 20:07:33,413] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: jquery.js [2025-04-30 20:07:33,423] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: agogo.css [2025-04-30 20:07:33,424] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: agogo.css [2025-04-30 20:07:33,424] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: agogo.css [2025-04-30 20:07:33,426] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: agogo.css [2025-04-30 20:07:33,433] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: agogo.css [2025-04-30 20:07:33,438] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: doctools.js [2025-04-30 20:07:33,439] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: doctools.js [2025-04-30 20:07:33,439] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: doctools.js [2025-04-30 20:07:33,440] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: doctools.js [2025-04-30 20:07:33,445] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: doctools.js [2025-04-30 20:07:33,457] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: basic.css [2025-04-30 20:07:33,458] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: basic.css [2025-04-30 20:07:33,458] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: basic.css [2025-04-30 20:07:33,459] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: basic.css [2025-04-30 20:07:33,467] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: basic.css [2025-04-30 20:07:33,470] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pygments.css [2025-04-30 20:07:33,471] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pygments.css [2025-04-30 20:07:33,473] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pygments.css [2025-04-30 20:07:33,480] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: websupport.js [2025-04-30 20:07:33,481] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: websupport.js [2025-04-30 20:07:33,481] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: websupport.js [2025-04-30 20:07:33,483] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: websupport.js [2025-04-30 20:07:33,495] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: websupport.js [2025-04-30 20:07:33,501] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: qualimapReport.html [2025-04-30 20:07:33,502] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: qualimapReport.html [2025-04-30 20:07:33,502] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: qualimapReport.html [2025-04-30 20:07:33,504] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: qualimapReport.html [2025-04-30 20:07:33,524] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: qualimapReport.html [2025-04-30 20:07:33,529] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-04-30 20:07:33,529] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-04-30 20:07:33,530] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-04-30 20:07:33,531] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-04-30 20:07:33,541] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-04-30 20:07:33,558] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-04-30 20:07:33,559] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-04-30 20:07:33,559] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-04-30 20:07:33,560] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-04-30 20:07:33,569] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-04-30 20:07:33,579] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-04-30 20:07:33,580] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-04-30 20:07:33,580] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-04-30 20:07:33,582] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-04-30 20:07:33,594] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-04-30 20:07:33,598] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-04-30 20:07:33,599] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-04-30 20:07:33,600] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-04-30 20:07:33,603] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-04-30 20:07:33,618] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-04-30 20:07:33,657] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: agogo.css [2025-04-30 20:07:33,658] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: agogo.css [2025-04-30 20:07:33,658] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: agogo.css [2025-04-30 20:07:33,659] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: agogo.css [2025-04-30 20:07:33,666] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: agogo.css [2025-04-30 20:07:33,678] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: basic.css [2025-04-30 20:07:33,679] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: basic.css [2025-04-30 20:07:33,679] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: basic.css [2025-04-30 20:07:33,681] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: basic.css [2025-04-30 20:07:33,689] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: basic.css [2025-04-30 20:07:33,699] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: websupport.js [2025-04-30 20:07:33,699] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: websupport.js [2025-04-30 20:07:33,700] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: websupport.js [2025-04-30 20:07:33,701] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: websupport.js [2025-04-30 20:07:33,714] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: websupport.js [2025-04-30 20:07:33,722] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: underscore.js [2025-04-30 20:07:33,723] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: underscore.js [2025-04-30 20:07:33,723] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: underscore.js [2025-04-30 20:07:33,724] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: underscore.js [2025-04-30 20:07:33,727] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: underscore.js [2025-04-30 20:07:33,730] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: jquery.js [2025-04-30 20:07:33,731] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: jquery.js [2025-04-30 20:07:33,731] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: jquery.js [2025-04-30 20:07:33,733] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: jquery.js [2025-04-30 20:07:33,740] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: jquery.js [2025-04-30 20:07:33,745] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: doctools.js [2025-04-30 20:07:33,746] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: doctools.js [2025-04-30 20:07:33,746] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: doctools.js [2025-04-30 20:07:33,748] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: doctools.js [2025-04-30 20:07:33,753] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: doctools.js [2025-04-30 20:07:33,756] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: searchtools.js [2025-04-30 20:07:33,757] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: searchtools.js [2025-04-30 20:07:33,757] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: searchtools.js [2025-04-30 20:07:33,759] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: searchtools.js [2025-04-30 20:07:33,768] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: searchtools.js [2025-04-30 20:07:33,771] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pygments.css [2025-04-30 20:07:33,772] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pygments.css [2025-04-30 20:07:33,774] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pygments.css [2025-04-30 20:07:33,781] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: qualimapReport.html [2025-04-30 20:07:33,782] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: qualimapReport.html [2025-04-30 20:07:33,782] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: qualimapReport.html [2025-04-30 20:07:33,784] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: qualimapReport.html [2025-04-30 20:07:33,805] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: qualimapReport.html [2025-04-30 20:07:33,809] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: websupport.js [2025-04-30 20:07:33,810] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: websupport.js [2025-04-30 20:07:33,810] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: websupport.js [2025-04-30 20:07:33,812] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: websupport.js [2025-04-30 20:07:33,825] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: websupport.js [2025-04-30 20:07:33,840] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: basic.css [2025-04-30 20:07:33,841] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: basic.css [2025-04-30 20:07:33,841] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: basic.css [2025-04-30 20:07:33,842] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: basic.css [2025-04-30 20:07:33,851] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: basic.css [2025-04-30 20:07:33,855] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: agogo.css [2025-04-30 20:07:33,856] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: agogo.css [2025-04-30 20:07:33,856] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: agogo.css [2025-04-30 20:07:33,858] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: agogo.css [2025-04-30 20:07:33,865] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: agogo.css [2025-04-30 20:07:33,873] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pygments.css [2025-04-30 20:07:33,874] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pygments.css [2025-04-30 20:07:33,875] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pygments.css [2025-04-30 20:07:33,882] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: searchtools.js [2025-04-30 20:07:33,883] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: searchtools.js [2025-04-30 20:07:33,883] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: searchtools.js [2025-04-30 20:07:33,885] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: searchtools.js [2025-04-30 20:07:33,895] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: searchtools.js [2025-04-30 20:07:33,902] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: doctools.js [2025-04-30 20:07:33,903] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: doctools.js [2025-04-30 20:07:33,904] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: doctools.js [2025-04-30 20:07:33,905] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: doctools.js [2025-04-30 20:07:33,912] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: doctools.js [2025-04-30 20:07:33,919] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: jquery.js [2025-04-30 20:07:33,920] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: jquery.js [2025-04-30 20:07:33,920] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: jquery.js [2025-04-30 20:07:33,922] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: jquery.js [2025-04-30 20:07:33,931] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: jquery.js [2025-04-30 20:07:33,938] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: underscore.js [2025-04-30 20:07:33,938] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: underscore.js [2025-04-30 20:07:33,939] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: underscore.js [2025-04-30 20:07:33,940] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: underscore.js [2025-04-30 20:07:33,943] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: underscore.js [2025-04-30 20:07:33,946] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-04-30 20:07:33,946] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-04-30 20:07:33,947] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-04-30 20:07:33,948] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-04-30 20:07:33,956] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-04-30 20:07:33,960] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-04-30 20:07:33,961] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-04-30 20:07:33,961] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-04-30 20:07:33,963] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-04-30 20:07:33,971] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-04-30 20:07:33,975] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-04-30 20:07:33,976] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-04-30 20:07:33,976] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-04-30 20:07:33,977] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-04-30 20:07:33,985] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-04-30 20:07:33,988] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-04-30 20:07:33,989] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-04-30 20:07:33,989] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-04-30 20:07:33,991] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-04-30 20:07:33,995] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-04-30 20:07:36,140] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2025-04-30 20:07:36,150] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2025-04-30 20:07:36,173] multiqc.modules.qualimap.QM_BamQC [DEBUG ] Using default Qualimap thresholds: 1, 5, 10, 30, 50 [2025-04-30 20:07:36,199] multiqc.modules.qualimap.qualimap [INFO ] Found 5 BamQC reports [2025-04-30 20:07:36,235] multiqc.modules.bismark.bismark [INFO ] Found 5 alignment reports [2025-04-30 20:07:36,238] multiqc.modules.bismark.bismark [INFO ] Found 5 dedup reports [2025-04-30 20:07:36,238] multiqc.modules.bismark.bismark [INFO ] Found 5 methextract reports [2025-04-30 20:07:36,246] multiqc.modules.bismark.bismark [INFO ] Found 5 bismark bam2nuc reports [2025-04-30 20:07:36,262] multiqc [INFO ] Compressing plot data [2025-04-30 20:07:36,435] multiqc [INFO ] Report : multiqc_report.html [2025-04-30 20:07:36,435] multiqc [INFO ] Data : multiqc_data [2025-04-30 20:07:36,435] multiqc [DEBUG ] Moving data file from '/tmp/tmpo9cw19pz/multiqc_data' to '/scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/D-Apul/output/08-Apul-WGBS/bismark_cutadapt/multiqc_data' [2025-04-30 20:07:36,733] multiqc [INFO ] MultiQC complete