[2025-04-10 18:05:20,739] multiqc                                            [DEBUG  ]  This is MultiQC v1.12
[2025-04-10 18:05:20,740] multiqc                                            [DEBUG  ]  No MultiQC config found: /modules/uri_apps/software/MultiQC/1.12-foss-2021b/lib/python3.9/site-packages/multiqc_config.yaml
[2025-04-10 18:05:20,742] multiqc                                            [DEBUG  ]  No MultiQC config found: /home/zdellaert_uri_edu/.multiqc_config.yaml
[2025-04-10 18:05:20,742] multiqc                                            [DEBUG  ]  No MultiQC config found: multiqc_config.yaml
[2025-04-10 18:05:20,742] multiqc                                            [DEBUG  ]  Command used: /modules/uri_apps/software/MultiQC/1.12-foss-2021b/bin/multiqc trimmed_ACR-140-TP2_S5_R1_001_fastqc.html trimmed_ACR-140-TP2_S5_R1_001_fastqc.zip trimmed_ACR-140-TP2_S5_R2_001_fastqc.html trimmed_ACR-140-TP2_S5_R2_001_fastqc.zip trimmed_ACR-145-TP2_S3_R1_001_fastqc.html trimmed_ACR-145-TP2_S3_R1_001_fastqc.zip trimmed_ACR-145-TP2_S3_R2_001_fastqc.html trimmed_ACR-145-TP2_S3_R2_001_fastqc.zip trimmed_ACR-150-TP2_S2_R1_001_fastqc.html trimmed_ACR-150-TP2_S2_R1_001_fastqc.zip trimmed_ACR-150-TP2_S2_R2_001_fastqc.html trimmed_ACR-150-TP2_S2_R2_001_fastqc.zip trimmed_ACR-173-TP2_S4_R1_001_fastqc.html trimmed_ACR-173-TP2_S4_R1_001_fastqc.zip trimmed_ACR-173-TP2_S4_R2_001_fastqc.html trimmed_ACR-173-TP2_S4_R2_001_fastqc.zip trimmed_ACR-178-TP2_S1_R1_001_fastqc.html trimmed_ACR-178-TP2_S1_R1_001_fastqc.zip trimmed_ACR-178-TP2_S1_R2_001_fastqc.html trimmed_ACR-178-TP2_S1_R2_001_fastqc.zip
[2025-04-10 18:05:21,450] multiqc                                            [WARNING]  MultiQC Version v1.28 now available!
[2025-04-10 18:05:21,450] multiqc                                            [DEBUG  ]  Command     : /modules/uri_apps/software/MultiQC/1.12-foss-2021b/bin/multiqc trimmed_ACR-140-TP2_S5_R1_001_fastqc.html trimmed_ACR-140-TP2_S5_R1_001_fastqc.zip trimmed_ACR-140-TP2_S5_R2_001_fastqc.html trimmed_ACR-140-TP2_S5_R2_001_fastqc.zip trimmed_ACR-145-TP2_S3_R1_001_fastqc.html trimmed_ACR-145-TP2_S3_R1_001_fastqc.zip trimmed_ACR-145-TP2_S3_R2_001_fastqc.html trimmed_ACR-145-TP2_S3_R2_001_fastqc.zip trimmed_ACR-150-TP2_S2_R1_001_fastqc.html trimmed_ACR-150-TP2_S2_R1_001_fastqc.zip trimmed_ACR-150-TP2_S2_R2_001_fastqc.html trimmed_ACR-150-TP2_S2_R2_001_fastqc.zip trimmed_ACR-173-TP2_S4_R1_001_fastqc.html trimmed_ACR-173-TP2_S4_R1_001_fastqc.zip trimmed_ACR-173-TP2_S4_R2_001_fastqc.html trimmed_ACR-173-TP2_S4_R2_001_fastqc.zip trimmed_ACR-178-TP2_S1_R1_001_fastqc.html trimmed_ACR-178-TP2_S1_R1_001_fastqc.zip trimmed_ACR-178-TP2_S1_R2_001_fastqc.html trimmed_ACR-178-TP2_S1_R2_001_fastqc.zip
[2025-04-10 18:05:21,450] multiqc                                            [DEBUG  ]  Working dir : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/D-Apul/output/01.00-D-Apul-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc
[2025-04-10 18:05:21,450] multiqc                                            [DEBUG  ]  Template    : default
[2025-04-10 18:05:21,450] multiqc                                            [DEBUG  ]  Running Python 3.9.6 (default, Nov 15 2024, 16:57:16)  [GCC 11.2.0]
[2025-04-10 18:05:21,452] multiqc                                            [DEBUG  ]  Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap
[2025-04-10 18:05:21,452] multiqc                                            [DEBUG  ]  Using temporary directory for creating report: /tmp/tmp9gwq3rqm
[2025-04-10 18:05:22,087] multiqc                                            [INFO   ]  Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/D-Apul/output/01.00-D-Apul-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_ACR-140-TP2_S5_R1_001_fastqc.html
[2025-04-10 18:05:22,087] multiqc                                            [INFO   ]  Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/D-Apul/output/01.00-D-Apul-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_ACR-140-TP2_S5_R1_001_fastqc.zip
[2025-04-10 18:05:22,087] multiqc                                            [INFO   ]  Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/D-Apul/output/01.00-D-Apul-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_ACR-140-TP2_S5_R2_001_fastqc.html
[2025-04-10 18:05:22,087] multiqc                                            [INFO   ]  Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/D-Apul/output/01.00-D-Apul-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_ACR-140-TP2_S5_R2_001_fastqc.zip
[2025-04-10 18:05:22,087] multiqc                                            [INFO   ]  Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/D-Apul/output/01.00-D-Apul-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_ACR-145-TP2_S3_R1_001_fastqc.html
[2025-04-10 18:05:22,088] multiqc                                            [INFO   ]  Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/D-Apul/output/01.00-D-Apul-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_ACR-145-TP2_S3_R1_001_fastqc.zip
[2025-04-10 18:05:22,088] multiqc                                            [INFO   ]  Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/D-Apul/output/01.00-D-Apul-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_ACR-145-TP2_S3_R2_001_fastqc.html
[2025-04-10 18:05:22,088] multiqc                                            [INFO   ]  Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/D-Apul/output/01.00-D-Apul-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_ACR-145-TP2_S3_R2_001_fastqc.zip
[2025-04-10 18:05:22,088] multiqc                                            [INFO   ]  Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/D-Apul/output/01.00-D-Apul-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_ACR-150-TP2_S2_R1_001_fastqc.html
[2025-04-10 18:05:22,088] multiqc                                            [INFO   ]  Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/D-Apul/output/01.00-D-Apul-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_ACR-150-TP2_S2_R1_001_fastqc.zip
[2025-04-10 18:05:22,088] multiqc                                            [INFO   ]  Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/D-Apul/output/01.00-D-Apul-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_ACR-150-TP2_S2_R2_001_fastqc.html
[2025-04-10 18:05:22,088] multiqc                                            [INFO   ]  Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/D-Apul/output/01.00-D-Apul-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_ACR-150-TP2_S2_R2_001_fastqc.zip
[2025-04-10 18:05:22,089] multiqc                                            [INFO   ]  Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/D-Apul/output/01.00-D-Apul-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_ACR-173-TP2_S4_R1_001_fastqc.html
[2025-04-10 18:05:22,089] multiqc                                            [INFO   ]  Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/D-Apul/output/01.00-D-Apul-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_ACR-173-TP2_S4_R1_001_fastqc.zip
[2025-04-10 18:05:22,089] multiqc                                            [INFO   ]  Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/D-Apul/output/01.00-D-Apul-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_ACR-173-TP2_S4_R2_001_fastqc.html
[2025-04-10 18:05:22,089] multiqc                                            [INFO   ]  Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/D-Apul/output/01.00-D-Apul-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_ACR-173-TP2_S4_R2_001_fastqc.zip
[2025-04-10 18:05:22,089] multiqc                                            [INFO   ]  Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/D-Apul/output/01.00-D-Apul-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_ACR-178-TP2_S1_R1_001_fastqc.html
[2025-04-10 18:05:22,089] multiqc                                            [INFO   ]  Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/D-Apul/output/01.00-D-Apul-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_ACR-178-TP2_S1_R1_001_fastqc.zip
[2025-04-10 18:05:22,089] multiqc                                            [INFO   ]  Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/D-Apul/output/01.00-D-Apul-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_ACR-178-TP2_S1_R2_001_fastqc.html
[2025-04-10 18:05:22,089] multiqc                                            [INFO   ]  Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/D-Apul/output/01.00-D-Apul-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_ACR-178-TP2_S1_R2_001_fastqc.zip
[2025-04-10 18:05:22,136] multiqc                                            [DEBUG  ]  File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_R1_001_fastqc.html
[2025-04-10 18:05:22,138] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_R1_001_fastqc.html
[2025-04-10 18:05:22,138] multiqc                                            [DEBUG  ]  File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_R1_001_fastqc.html
[2025-04-10 18:05:22,140] multiqc                                            [DEBUG  ]  File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_R1_001_fastqc.html
[2025-04-10 18:05:22,141] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_R1_001_fastqc.html
[2025-04-10 18:05:22,141] multiqc                                            [DEBUG  ]  File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_R1_001_fastqc.html
[2025-04-10 18:05:22,141] multiqc                                            [DEBUG  ]  File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_R1_001_fastqc.html
[2025-04-10 18:05:22,141] multiqc                                            [DEBUG  ]  File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_R1_001_fastqc.html
[2025-04-10 18:05:22,141] multiqc                                            [DEBUG  ]  File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_R1_001_fastqc.html
[2025-04-10 18:05:22,141] multiqc                                            [DEBUG  ]  File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_R1_001_fastqc.html
[2025-04-10 18:05:22,168] multiqc                                            [DEBUG  ]  File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_R1_001_fastqc.html
[2025-04-10 18:05:22,174] multiqc                                            [DEBUG  ]  File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_R2_001_fastqc.html
[2025-04-10 18:05:22,175] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_R2_001_fastqc.html
[2025-04-10 18:05:22,175] multiqc                                            [DEBUG  ]  File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_R2_001_fastqc.html
[2025-04-10 18:05:22,177] multiqc                                            [DEBUG  ]  File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_R2_001_fastqc.html
[2025-04-10 18:05:22,177] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_R2_001_fastqc.html
[2025-04-10 18:05:22,177] multiqc                                            [DEBUG  ]  File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_R2_001_fastqc.html
[2025-04-10 18:05:22,177] multiqc                                            [DEBUG  ]  File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_R2_001_fastqc.html
[2025-04-10 18:05:22,177] multiqc                                            [DEBUG  ]  File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_R2_001_fastqc.html
[2025-04-10 18:05:22,177] multiqc                                            [DEBUG  ]  File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_R2_001_fastqc.html
[2025-04-10 18:05:22,177] multiqc                                            [DEBUG  ]  File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_R2_001_fastqc.html
[2025-04-10 18:05:22,204] multiqc                                            [DEBUG  ]  File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_ACR-140-TP2_S5_R2_001_fastqc.html
[2025-04-10 18:05:22,209] multiqc                                            [DEBUG  ]  File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_R1_001_fastqc.html
[2025-04-10 18:05:22,210] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_R1_001_fastqc.html
[2025-04-10 18:05:22,210] multiqc                                            [DEBUG  ]  File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_R1_001_fastqc.html
[2025-04-10 18:05:22,212] multiqc                                            [DEBUG  ]  File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_R1_001_fastqc.html
[2025-04-10 18:05:22,212] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_R1_001_fastqc.html
[2025-04-10 18:05:22,212] multiqc                                            [DEBUG  ]  File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_R1_001_fastqc.html
[2025-04-10 18:05:22,212] multiqc                                            [DEBUG  ]  File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_R1_001_fastqc.html
[2025-04-10 18:05:22,212] multiqc                                            [DEBUG  ]  File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_R1_001_fastqc.html
[2025-04-10 18:05:22,212] multiqc                                            [DEBUG  ]  File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_R1_001_fastqc.html
[2025-04-10 18:05:22,212] multiqc                                            [DEBUG  ]  File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_R1_001_fastqc.html
[2025-04-10 18:05:22,238] multiqc                                            [DEBUG  ]  File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_R1_001_fastqc.html
[2025-04-10 18:05:22,244] multiqc                                            [DEBUG  ]  File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_R2_001_fastqc.html
[2025-04-10 18:05:22,245] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_R2_001_fastqc.html
[2025-04-10 18:05:22,245] multiqc                                            [DEBUG  ]  File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_R2_001_fastqc.html
[2025-04-10 18:05:22,246] multiqc                                            [DEBUG  ]  File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_R2_001_fastqc.html
[2025-04-10 18:05:22,247] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_R2_001_fastqc.html
[2025-04-10 18:05:22,247] multiqc                                            [DEBUG  ]  File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_R2_001_fastqc.html
[2025-04-10 18:05:22,247] multiqc                                            [DEBUG  ]  File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_R2_001_fastqc.html
[2025-04-10 18:05:22,247] multiqc                                            [DEBUG  ]  File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_R2_001_fastqc.html
[2025-04-10 18:05:22,247] multiqc                                            [DEBUG  ]  File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_R2_001_fastqc.html
[2025-04-10 18:05:22,247] multiqc                                            [DEBUG  ]  File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_R2_001_fastqc.html
[2025-04-10 18:05:22,273] multiqc                                            [DEBUG  ]  File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_ACR-145-TP2_S3_R2_001_fastqc.html
[2025-04-10 18:05:22,278] multiqc                                            [DEBUG  ]  File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_R1_001_fastqc.html
[2025-04-10 18:05:22,279] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_R1_001_fastqc.html
[2025-04-10 18:05:22,279] multiqc                                            [DEBUG  ]  File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_R1_001_fastqc.html
[2025-04-10 18:05:22,281] multiqc                                            [DEBUG  ]  File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_R1_001_fastqc.html
[2025-04-10 18:05:22,281] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_R1_001_fastqc.html
[2025-04-10 18:05:22,281] multiqc                                            [DEBUG  ]  File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_R1_001_fastqc.html
[2025-04-10 18:05:22,281] multiqc                                            [DEBUG  ]  File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_R1_001_fastqc.html
[2025-04-10 18:05:22,281] multiqc                                            [DEBUG  ]  File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_R1_001_fastqc.html
[2025-04-10 18:05:22,281] multiqc                                            [DEBUG  ]  File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_R1_001_fastqc.html
[2025-04-10 18:05:22,281] multiqc                                            [DEBUG  ]  File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_R1_001_fastqc.html
[2025-04-10 18:05:22,308] multiqc                                            [DEBUG  ]  File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_R1_001_fastqc.html
[2025-04-10 18:05:22,313] multiqc                                            [DEBUG  ]  File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_R2_001_fastqc.html
[2025-04-10 18:05:22,314] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_R2_001_fastqc.html
[2025-04-10 18:05:22,314] multiqc                                            [DEBUG  ]  File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_R2_001_fastqc.html
[2025-04-10 18:05:22,316] multiqc                                            [DEBUG  ]  File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_R2_001_fastqc.html
[2025-04-10 18:05:22,316] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_R2_001_fastqc.html
[2025-04-10 18:05:22,316] multiqc                                            [DEBUG  ]  File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_R2_001_fastqc.html
[2025-04-10 18:05:22,316] multiqc                                            [DEBUG  ]  File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_R2_001_fastqc.html
[2025-04-10 18:05:22,316] multiqc                                            [DEBUG  ]  File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_R2_001_fastqc.html
[2025-04-10 18:05:22,316] multiqc                                            [DEBUG  ]  File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_R2_001_fastqc.html
[2025-04-10 18:05:22,316] multiqc                                            [DEBUG  ]  File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_R2_001_fastqc.html
[2025-04-10 18:05:22,342] multiqc                                            [DEBUG  ]  File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_ACR-150-TP2_S2_R2_001_fastqc.html
[2025-04-10 18:05:22,347] multiqc                                            [DEBUG  ]  File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_R1_001_fastqc.html
[2025-04-10 18:05:22,348] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_R1_001_fastqc.html
[2025-04-10 18:05:22,348] multiqc                                            [DEBUG  ]  File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_R1_001_fastqc.html
[2025-04-10 18:05:22,350] multiqc                                            [DEBUG  ]  File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_R1_001_fastqc.html
[2025-04-10 18:05:22,350] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_R1_001_fastqc.html
[2025-04-10 18:05:22,350] multiqc                                            [DEBUG  ]  File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_R1_001_fastqc.html
[2025-04-10 18:05:22,350] multiqc                                            [DEBUG  ]  File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_R1_001_fastqc.html
[2025-04-10 18:05:22,350] multiqc                                            [DEBUG  ]  File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_R1_001_fastqc.html
[2025-04-10 18:05:22,350] multiqc                                            [DEBUG  ]  File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_R1_001_fastqc.html
[2025-04-10 18:05:22,350] multiqc                                            [DEBUG  ]  File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_R1_001_fastqc.html
[2025-04-10 18:05:22,376] multiqc                                            [DEBUG  ]  File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_R1_001_fastqc.html
[2025-04-10 18:05:22,381] multiqc                                            [DEBUG  ]  File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_R2_001_fastqc.html
[2025-04-10 18:05:22,382] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_R2_001_fastqc.html
[2025-04-10 18:05:22,382] multiqc                                            [DEBUG  ]  File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_R2_001_fastqc.html
[2025-04-10 18:05:22,384] multiqc                                            [DEBUG  ]  File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_R2_001_fastqc.html
[2025-04-10 18:05:22,384] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_R2_001_fastqc.html
[2025-04-10 18:05:22,384] multiqc                                            [DEBUG  ]  File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_R2_001_fastqc.html
[2025-04-10 18:05:22,384] multiqc                                            [DEBUG  ]  File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_R2_001_fastqc.html
[2025-04-10 18:05:22,384] multiqc                                            [DEBUG  ]  File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_R2_001_fastqc.html
[2025-04-10 18:05:22,384] multiqc                                            [DEBUG  ]  File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_R2_001_fastqc.html
[2025-04-10 18:05:22,384] multiqc                                            [DEBUG  ]  File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_R2_001_fastqc.html
[2025-04-10 18:05:22,411] multiqc                                            [DEBUG  ]  File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_ACR-173-TP2_S4_R2_001_fastqc.html
[2025-04-10 18:05:22,416] multiqc                                            [DEBUG  ]  File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_R1_001_fastqc.html
[2025-04-10 18:05:22,417] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_R1_001_fastqc.html
[2025-04-10 18:05:22,417] multiqc                                            [DEBUG  ]  File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_R1_001_fastqc.html
[2025-04-10 18:05:22,418] multiqc                                            [DEBUG  ]  File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_R1_001_fastqc.html
[2025-04-10 18:05:22,419] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_R1_001_fastqc.html
[2025-04-10 18:05:22,419] multiqc                                            [DEBUG  ]  File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_R1_001_fastqc.html
[2025-04-10 18:05:22,419] multiqc                                            [DEBUG  ]  File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_R1_001_fastqc.html
[2025-04-10 18:05:22,419] multiqc                                            [DEBUG  ]  File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_R1_001_fastqc.html
[2025-04-10 18:05:22,419] multiqc                                            [DEBUG  ]  File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_R1_001_fastqc.html
[2025-04-10 18:05:22,419] multiqc                                            [DEBUG  ]  File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_R1_001_fastqc.html
[2025-04-10 18:05:22,444] multiqc                                            [DEBUG  ]  File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_R1_001_fastqc.html
[2025-04-10 18:05:22,450] multiqc                                            [DEBUG  ]  File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_R2_001_fastqc.html
[2025-04-10 18:05:22,451] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_R2_001_fastqc.html
[2025-04-10 18:05:22,451] multiqc                                            [DEBUG  ]  File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_R2_001_fastqc.html
[2025-04-10 18:05:22,452] multiqc                                            [DEBUG  ]  File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_R2_001_fastqc.html
[2025-04-10 18:05:22,452] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_R2_001_fastqc.html
[2025-04-10 18:05:22,453] multiqc                                            [DEBUG  ]  File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_R2_001_fastqc.html
[2025-04-10 18:05:22,453] multiqc                                            [DEBUG  ]  File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_R2_001_fastqc.html
[2025-04-10 18:05:22,453] multiqc                                            [DEBUG  ]  File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_R2_001_fastqc.html
[2025-04-10 18:05:22,453] multiqc                                            [DEBUG  ]  File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_R2_001_fastqc.html
[2025-04-10 18:05:22,453] multiqc                                            [DEBUG  ]  File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_R2_001_fastqc.html
[2025-04-10 18:05:22,479] multiqc                                            [DEBUG  ]  File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_ACR-178-TP2_S1_R2_001_fastqc.html
[2025-04-10 18:05:25,132] multiqc.plots.linegraph                            [DEBUG  ]  Using matplotlib version 3.4.3
[2025-04-10 18:05:25,139] multiqc.plots.bargraph                             [DEBUG  ]  Using matplotlib version 3.4.3
[2025-04-10 18:05:26,340] multiqc.modules.fastqc.fastqc                      [INFO   ]  Found 10 reports
[2025-04-10 18:05:26,472] multiqc                                            [INFO   ]  Compressing plot data
[2025-04-10 18:05:26,639] multiqc                                            [INFO   ]  Report      : multiqc_report.html
[2025-04-10 18:05:26,639] multiqc                                            [INFO   ]  Data        : multiqc_data
[2025-04-10 18:05:26,639] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmp9gwq3rqm/multiqc_data' to '/scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/D-Apul/output/01.00-D-Apul-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/multiqc_data'
[2025-04-10 18:05:27,086] multiqc                                            [INFO   ]  MultiQC complete