Index of /kdurkin1/ravenbackups/deep-dive-expression/D-Apul/code

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory   -  
[ ]00.00-D-Apul-WGBS-re..>2025-02-11 11:09 7.3K 
[ ]00.00-D-Apul-WGBS-re..>2025-02-11 11:09 19K 
[TXT]01-Apul-RNA-trimming..>2024-09-25 12:51 8.5K 
[TXT]01-Apul-RNA-trimming..>2024-09-25 12:47 1.0M 
[ ]01-Apul-RNA-trimming..>2024-09-25 12:47 16K 
[ ]01.00-D-Apul-WGBS-tr..>2025-04-11 12:20 3.8K 
[TXT]01.00-D-Apul-WGBS-tr..>2025-04-11 12:20 3.6K 
[ ]01.00-D-Apul-WGBS-tr..>2025-05-05 23:44 6.5K 
[TXT]01.00-D-Apul-WGBS-tr..>2025-05-05 23:44 9.7K 
[TXT]02-Apul-reference-an..>2025-02-07 12:43 19K 
[TXT]02-Apul-reference-an..>2024-12-16 07:31 11M 
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[DIR]02-Apul-reference-an..>2024-12-16 07:08 -  
[DIR]02-Apul-reference-an..>2024-09-25 12:47 -  
[ ]03-Apul-RNA-summary.Rmd2024-09-25 17:06 16K 
[TXT]03-Apul-RNA-summary...>2024-09-25 17:07 1.8M 
[ ]03-Apul-RNA-summary.md 2024-09-25 17:06 28K 
[DIR]03-Apul-RNA-summary_..>2024-09-25 17:06 -  
[DIR]03-Apul-RNA-summary_..>2024-09-25 17:06 -  
[ ]03.01-Apul-RNA-summa..>2025-02-07 12:44 16K 
[ ]03.01-Apul-RNA-summa..>2025-02-07 12:45 22K 
[DIR]03.01-Apul-RNA-summa..>2025-02-07 12:10 -  
[DIR]03.01-Apul-RNA-summa..>2025-02-07 12:10 -  
[ ]03.1-Apul-sRNA-summa..>2024-11-13 13:56 31K 
[TXT]03.1-Apul-sRNA-summa..>2024-11-13 13:57 3.8M 
[ ]03.1-Apul-sRNA-summa..>2024-11-13 13:56 39K 
[DIR]03.1-Apul-sRNA-summa..>2024-11-11 14:48 -  
[DIR]03.1-Apul-sRNA-summa..>2024-10-29 17:10 -  
[ ]03.2-Apul-lncRNA-sum..>2025-05-06 00:14 13K 
[ ]03.2-Apul-lncRNA-sum..>2025-05-06 00:15 18K 
[DIR]03.2-Apul-lncRNA-sum..>2025-05-06 00:15 -  
[DIR]03.2-Apul-lncRNA-sum..>2025-05-06 00:15 -  
[ ]04-Apul-RNA-sRNA-WGC..>2024-10-29 17:56 8.3K 
[TXT]04-Apul-RNA-sRNA-WGC..>2024-09-25 12:47 1.8M 
[ ]04-Apul-RNA-sRNA-WGC..>2024-09-25 12:47 26K 
[DIR]04-Apul-RNA-sRNA-WGC..>2024-09-25 12:47 -  
[ ]05-Apul-mixOmics.Rmd 2025-01-28 14:08 4.5K 
[TXT]07-Apul-Hisat.qmd 2024-11-11 15:45 8.9K 
[TXT]08-Apul-WGBS.Rmd 2025-05-05 23:44 16K 
[TXT]08-Apul-WGBS.md 2025-05-05 23:44 17K 
[ ]08.1-Apul-WGBS-simda..>2025-04-11 12:20 6.8K 
[TXT]09-Apul-mRNA-miRNA-i..>2025-02-11 11:09 21K 
[TXT]09-Apul-mirTarRnaSeq..>2024-10-04 12:19 3.6K 
[ ]09.1-Apul-mRNA-miRNA..>2025-04-11 12:10 34K 
[ ]09.1-Apul-mRNA-miRNA..>2025-04-11 12:13 252K 
[DIR]09.1-Apul-mRNA-miRNA..>2025-04-08 14:55 -  
[TXT]7.2-Apul-Hisat.qmd 2024-11-11 15:45 5.4K 
[TXT]10-Apul-lncRNA.qmd 2025-01-28 14:08 8.9K 
[TXT]10.1-Apul-lncRNA.qmd 2025-01-28 14:08 8.5K 
[ ]11-Apul-sRNA-ShortSt..>2024-10-22 17:00 16K 
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[ ]11-Apul-sRNA-ShortSt..>2024-10-22 16:59 27K 
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[TXT]11.1-Apul-sRNA-Short..>2025-02-21 11:21 4.1K 
[TXT]12-Apul-genome-explo..>2024-10-08 16:01 5.3K 
[ ]12-Apul-genome-explo..>2024-10-08 16:01 1.1K 
[ ]13-Apul-miRNA-naming..>2024-11-08 15:07 697  
[TXT]14-Apul-RepeatMasker..>2024-11-08 16:17 4.3K 
[TXT]15-Apul-annotate-UTR..>2024-12-16 09:20 8.6K 
[TXT]15-Apul-annotate-UTR..>2024-12-16 09:20 1.0M 
[TXT]15-Apul-annotate-UTR..>2024-12-16 09:20 13K 
[TXT]16-Apul-RNAhybrid.Rmd 2024-12-18 14:53 19K 
[TXT]16-Apul-RNAhybrid.html 2024-12-18 14:54 1.4M 
[TXT]16-Apul-RNAhybrid.md 2024-12-18 14:53 23K 
[DIR]16-Apul-RNAhybrid_fi..>2024-12-18 14:54 -  
[TXT]17-Apul-miRNA-lncRNA..>2025-02-11 11:10 31K 
[TXT]17-Apul-miRNA-lncRNA..>2025-02-11 11:10 1.1M 
[TXT]17-Apul-miRNA-lncRNA..>2025-02-11 11:08 58K 
[DIR]17-Apul-miRNA-lncRNA..>2025-02-11 11:10 -  
[TXT]18-Apul-interactions..>2024-12-18 14:45 6.4K 
[TXT]18-Apul-interactions..>2024-12-18 14:45 1.1M 
[TXT]18-Apul-interactions..>2024-12-18 14:45 31K 
[TXT]19-Apul-lncRNA-matri..>2025-01-28 14:08 1.3K 
[ ]20-Apul-Orthofinder.Rmd2025-01-28 14:08 10K 
[TXT]20-Apul-Orthofinder.md 2025-01-28 14:08 13K 
[ ]21-Apul-mRNA-lncRNA-..>2025-02-27 11:30 12K 
[ ]21-Apul-mRNA-lncRNA-..>2025-02-07 08:49 35K 
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[TXT]22-Apul-methylation.qmd2025-02-21 11:21 5.8K 
[TXT]22.2-Apul-methylatio..>2025-02-21 11:21 5.8K 
[TXT]22.3-Apul-methylatio..>2025-02-21 11:21 5.8K 
[TXT]23-Apul-miRNA-methyl..>2025-02-07 08:54 5.4K 
[TXT]23-Apul-miRNA-methyl..>2025-02-07 08:54 7.7K 
[TXT]24-Apul-miRanda-inpu..>2025-02-26 15:01 21K 
[ ]24-Apul-miRanda-inpu..>2025-02-26 15:02 28K 
[DIR]24-Apul-miRanda-inpu..>2025-02-14 08:36 -  
[TXT]25-lncRNA-pipeline.qmd 2025-02-25 11:03 10K 
[TXT]26-Apul-siRNA-mRNA-i..>2025-03-18 13:23 20K 
[ ]26-Apul-siRNA-mRNA-i..>2025-02-28 07:44 16K 
[TXT]27-Apul-pheno-annot.qmd2025-04-08 12:16 8.2K 
[ ]genome-stats.sh 2024-10-08 16:01 1.9K 
[ ]references.bib 2025-02-11 11:09 800  
[TXT]siRNA-reads-to-genom..>2025-03-14 12:02 0  
[TXT]siRNA-reads-to-genom..>2025-03-14 12:02 0