PLINK v1.90b7 64-bit (16 Jan 2023)
Options in effect:
  --allow-extra-chr
  --double-id
  --make-rel square
  --out relatedness
  --set-missing-var-ids @:#
  --vcf merged.filtered.vcf.gz

Hostname: raven
Working directory: /home/shared/8TB_HDD_02/shedurkin/ceasmallr/output/12-snp-calling-BS-Snper/per-sample
Start time: Tue Sep 22 23:27:03 2026

Random number seed: 1790144823
253344 MB RAM detected; reserving 126672 MB for main workspace.
--vcf: relatedness-temporary.bed + relatedness-temporary.bim +
relatedness-temporary.fam written.
32311 variants loaded from .bim file.
32311 missing IDs set.
32 people (0 males, 0 females, 32 ambiguous) loaded from .fam.
Ambiguous sex IDs written to relatedness.nosex .
Using up to 47 threads (change this with --threads).
Before main variant filters, 32 founders and 0 nonfounders present.
Calculating allele frequencies... done.
Total genotyping rate is 0.599424.
32311 variants and 32 people pass filters and QC.
Note: No phenotypes present.
Relationship matrix calculation complete.
Relationship matrix written to relatedness.rel , and IDs written to
relatedness.rel.id .

End time: Tue Sep 22 23:27:03 2026