BAM?@HD VN:1.0 SO:coordinate @SQ SN:NC_035780.1 LN:65668440 @SQ SN:NC_035781.1 LN:61752955 @SQ SN:NC_035782.1 LN:77061148 @SQ SN:NC_035783.1 LN:59691872 @SQ SN:NC_035784.1 LN:98698416 @SQ SN:NC_035785.1 LN:51258098 @SQ SN:NC_035786.1 LN:57830854 @SQ SN:NC_035787.1 LN:75944018 @SQ SN:NC_035788.1 LN:104168038 @SQ SN:NC_035789.1 LN:32650045 @SQ SN:NC_007175.2 LN:17244 @PG ID:Bismark VN:v0.24.2 CL:"bismark --genome /gscratch/scrubbed/samwhite/gitrepos/ceasmallr/data/Cvirginica_v300 --score_min L,0,-0.6 --parallel 15 --non_directional --gzip -p 15 -1 /gscratch/scrubbed/samwhite/gitrepos/ceasmallr/output/00.00-trimming-fastp/EF02-EM02-Zygote_R1_001.fastp-trim.fq.gz -2 /gscratch/scrubbed/samwhite/gitrepos/ceasmallr/output/00.00-trimming-fastp/EF02-EM02-Zygote_R2_001.fastp-trim.fq.gz --output_dir /gscratch/scrubbed/samwhite/gitrepos/ceasmallr/output/02.01-bismark-bowtie2-alignment-SLURM-array" @PG ID:samtools PN:samtools PP:Bismark VN:1.20 CL:/srlab/programs/samtools-1.20/samtools view -bSh - @PG ID:samtools.1 PN:samtools PP:samtools VN:1.20 CL:/srlab/programs/samtools-1.20/samtools view -h /gscratch/scrubbed/samwhite/gitrepos/ceasmallr/output/02.01-bismark-bowtie2-alignment-SLURM-array/EF02-EM02-Zygote_R1_001.fastp-trim.fq.gz.temp.1.gz_bismark_bt2_pe.bam @PG ID:samtools.2 PN:samtools PP:samtools.1 VN:1.20 CL:/srlab/programs/samtools-1.20/samtools view -bSh - @PG ID:samtools.3 PN:samtools PP:samtools.2 VN:1.12 CL:/home/shared/samtools-1.12/samtools view -h --threads 1 EF02-EM02-Zygote_R1_001.fastp-trim_bismark_bt2_pe.bam @PG ID:samtools.4 PN:samtools PP:samtools.3 VN:1.12 CL:/home/shared/samtools-1.12/samtools view -bS --threads 1 - @PG ID:samtools.5 PN:samtools PP:samtools.4 VN:1.12 CL:/home/shared/samtools-1.12/samtools sort -@ 40 -o EF02-EM02-Zygote_dedup.sorted.bam EF02-EM02-Zygote_R1_001.fastp-trim_bismark_bt2_pe.deduplicated.bam NC_035780.1Xê NC_035781.1{F® NC_035782.1Ü— NC_035783.1`ÓŽ NC_035784.1°â NC_035785.1ò" NC_035786.1Æmr NC_035787.1RІ NC_035788.1fz5 NC_035789.1=3ò NC_007175.2\C