##  See ftp://ftp.ncbi.nlm.nih.gov/genomes/README_assembly_summary.txt for a description of the columns in this file.
#assembly_accession	bioproject	biosample	wgs_master	refseq_category	taxid	species_taxid	organism_name	infraspecific_name	isolate	version_status	assembly_level	release_type	genome_rep	seq_rel_date	asm_name	asm_submitter	gbrs_paired_asm	paired_asm_comp	ftp_path	excluded_from_refseq	relation_to_type_material	asm_not_live_date	assembly_type	group	genome_size	genome_size_ungapped	gc_percent	replicon_count	scaffold_count	contig_count	annotation_provider	annotation_name	annotation_date	total_gene_count	protein_coding_gene_count	non_coding_gene_count	pubmed_id
GCF_041956525.1	PRJNA1175690	SAMN39447127	JAZGQV000000000.1	reference genome	4840	4840	Rhizomucor pusillus	strain=CBS 183.67	na	latest	Scaffold	Major	Full	2024-09-16	Rhipu1	DOE Joint Genome Institute	GCA_041956525.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/041/956/525/GCF_041956525.1_Rhipu1	na	na	na	haploid	fungi	25384556	24979024	45.000000	0	48	437	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-10-23	11084	10974	110	39266695
GCF_000002945.2	PRJNA127	SAMEA3138176	na	reference genome	4896	4896	Schizosaccharomyces pombe	strain=972h-	na	latest	Chromosome	Major	Full	2019-07-23	ASM294v3	S. pombe European Sequencing Consortium (EUPOM)	GCA_000002945.3	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/945/GCF_000002945.2_ASM294v3	na	na	na	haploid	fungi	12571820	12571420	36.000000	3	3	3	PomBase	Annotation submitted by PomBase	2024-08-16	12645	5124	7489	2446871;2780299;4046021;6092057;11859360;15811919
GCF_003054445.1	PRJNA545694	SAMN08558011	na	reference genome	4909	4909	Pichia kudriavzevii	strain=CBS573	na	latest	Complete Genome	Major	Full	2018-04-17	ASM305444v1	University College Dublin	GCA_003054445.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/054/445/GCF_003054445.1_ASM305444v1	na	assembly from heterotypic synonym type material	na	haploid	fungi	10812555	10812555	38.500000	5	5	5	University College Dublin	Annotation submitted by University College Dublin	2019-06-16	5324	5139	185	na
GCF_000243375.1	PRJNA79345	SAMEA2272433	na	reference genome	4950	4950	Torulaspora delbrueckii	strain=type strain:CBS 1146	na	latest	Chromosome	Major	Full	2011-12-08	ASM24337v1	Wolfe Laboratory, Smurfit Institute of Genetics, Trinity College Dublin, Ireland	GCA_000243375.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/243/375/GCF_000243375.1_ASM24337v1	na	assembly designated as neotype	na	haploid	fungi	9220678	9218568	42.000000	8	8	8	Wolfe Laboratory, Smurfit Institute of Genetics, Trinity College Dublin, Ireland	Annotation submitted by Wolfe Laboratory, Smurfit Institute of Genetics, Trinity College Dublin, Ireland	2025-07-15	5174	4970	204	22123960
GCF_001761485.1	PRJNA1159202	SAMN04088558	na	reference genome	4952	4952	Yarrowia lipolytica	strain=CLIB89(W29)	na	latest	Complete Genome	Major	Full	2016-10-12	ASM176148v1	University of California, Irvine	GCA_001761485.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/761/485/GCF_001761485.1_ASM176148v1	na	na	na	haploid	fungi	20500066	20500066	49.000000	6	6	6	University of California, Irvine	Annotation submitted by University of California, Irvine	2024-09-10	8689	7918	652	27603307
GCF_000026365.1	PRJNA39573	SAMEA3138235	na	reference genome	4956	4956	Zygosaccharomyces rouxii	strain=CBS 732	na	latest	Chromosome	Major	Full	2009-06-05	ASM2636v1	Genolevures Consortium	GCA_000026365.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/026/365/GCF_000026365.1_ASM2636v1	na	assembly from type material	na	haploid	fungi	9764635	9763366	39.000000	7	7	7	Genolevures Consortium	Annotation submitted by Genolevures Consortium	2025-07-15	5323	4991	332	19525356
GCF_025882075.1	PRJNA926498	SAMN26195980	JAKWFO000000000.1	reference genome	4972	4972	Dioszegia hungarica	strain=PDD-24b-2	na	latest	Contig	Major	Full	2022-10-28	ASM2588207v1	Universite de Strasbourg	GCA_025882075.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/882/075/GCF_025882075.1_ASM2588207v1	na	na	na	haploid	fungi	20956552	20956552	57.000000	0	16	16	Universite de Strasbourg	Annotation submitted by Universite de Strasbourg	2023-01-27	8321	8234	83	36259934
GCF_002102565.1	PRJNA396742	SAMN05445367	NBSH00000000.1	reference genome	4999	4999	Kockovaella imperatae	strain=NRRL Y-17943	na	latest	Contig	Major	Full	2017-04-20	Kocim1	DOE Joint Genome Institute	GCA_002102565.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/102/565/GCF_002102565.1_Kocim1	na	na	na	haploid	fungi	17465713	17465713	52.000000	0	38	38	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2017-08-28	7428	7392	32	na
GCF_011074885.1	PRJNA691332	SAMN12257691	na	reference genome	5007	5007	Brettanomyces bruxellensis	strain=UCD 2041	na	latest	Complete Genome	Major	Full	2020-10-30	ASM1107488v2	Australian Wine Research Institute	GCA_011074885.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/074/885/GCF_011074885.1_ASM1107488v2	na	na	na	haploid	fungi	13150648	13150648	40.000000	9	9	9	Australian Wine Research Institute	Annotation submitted by Australian Wine Research Institute	2021-09-16	5342	5243	99	32122298
GCF_028858645.1	PRJNA1128250	SAMN33211508	JARAAZ000000000.1	reference genome	5016	5016	Bipolaris maydis	strain=C4	na	latest	Scaffold	Major	Full	2023-02-23	CocheC4_6	DOE Joint Genome Institute	GCA_028858645.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/858/645/GCF_028858645.1_CocheC4_6	na	na	na	haploid	fungi	37785996	37675028	48.500000	0	70	82	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-06-26	11399	11323	75	36883814
GCF_022343315.1	PRJNA1128256	SAMN15948182	JACTNS000000000.1	reference genome	5022	5022	Plenodomus lingam	strain=CAN1	na	latest	Scaffold	Major	Full	2022-02-18	CAIQ.LM.1	Chinese Academy of Inspection and Quarantine	GCA_022343315.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/343/315/GCF_022343315.1_CAIQ.LM.1	na	na	na	haploid	fungi	42037832	42037732	45.500000	0	48	48	Chinese Academy of Inspection and Quarantine	Annotation submitted by Chinese Academy of Inspection and Quarantine	2024-06-26	11989	11837	152	na
GCF_009017415.1	PRJNA1225730	SAMN12911038	na	reference genome	5059	5059	Aspergillus flavus	strain=NRRL 3357	na	latest	Complete Genome	Major	Full	2019-10-13	ASM901741v1	University of California, Berkeley	GCA_009017415.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/017/415/GCF_009017415.1_ASM901741v1	na	na	na	haploid	fungi	37749288	37749288	47.500000	8	8	8	University of California, Berkeley	Annotation submitted by University of California, Berkeley	2025-02-19	13956	13707	246	na
GCF_000002855.4	PRJNA19263	SAMEA3283178	na	reference genome	5061	5061	Aspergillus niger	na	na	latest	Scaffold	Major	Full	2007-04-11	ASM285v2	DSM, The Netherlands	GCA_000002855.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/855/GCF_000002855.4_ASM285v2	na	na	na	haploid	fungi	33975768	33930600	50.500000	8	19	468	DSM, The Netherlands	Annotation submitted by DSM, The Netherlands	2025-02-21	14404	14058	329	na
GCF_013340325.1	PRJNA645154	SAMD00216538	BLWE00000000.1	reference genome	5068	5068	Aspergillus tubingensis	strain=WU-2223L	na	latest	Scaffold	Major	Full	2020-06-09	ASM1334032v1	Waseda University	GCA_013340325.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/340/325/GCF_013340325.1_ASM1334032v1	na	na	na	haploid	fungi	35047229	35047219	49.500000	0	15	15	Waseda University	Annotation submitted by Waseda University	2025-02-22	11809	11476	333	na
GCF_028827555.1	PRJNA973687	SAMN30185303	JAPZBP000000000.1	reference genome	5074	5074	Penicillium brevicompactum	strain=IBT 35665	na	latest	Contig	Major	Full	2023-02-23	ASM2882755v1	Aalborg University	GCA_028827555.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/827/555/GCF_028827555.1_ASM2882755v1	na	na	na	haploid	fungi	34726155	34726155	49.000000	0	9	9	Aalborg University	Annotation submitted by Aalborg University	2023-06-06	12371	12367	0	36726175
GCF_028827035.1	PRJNA973687	SAMN30185319	JAPQKU000000000.1	reference genome	5076	5076	Penicillium chrysogenum	strain=IBT 35668	na	latest	Contig	Major	Full	2023-02-23	ASM2882703v1	Aalborg University	GCA_028827035.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/827/035/GCF_028827035.1_ASM2882703v1	na	na	na	haploid	fungi	32379777	32379777	49.000000	0	4	4	Aalborg University	Annotation submitted by Aalborg University	2023-06-20	11975	11974	0	36726175
GCF_028827155.1	PRJNA973687	SAMN30185321	JAPQKT000000000.1	reference genome	5077	5077	Penicillium citrinum	strain=IBT 23319	na	latest	Contig	Major	Full	2023-02-23	ASM2882715v1	Aalborg University	GCA_028827155.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/827/155/GCF_028827155.1_ASM2882715v1	na	na	na	haploid	fungi	31396546	31396546	46.500000	0	12	12	Aalborg University	Annotation submitted by Aalborg University	2023-06-20	11664	11664	0	36726175
GCF_001561935.1	PRJNA721990	SAMN03860337	LHQR00000000.1	reference genome	5078	5078	Penicillium griseofulvum	strain=PG3	na	latest	Contig	Major	Full	2016-02-16	ASM156193v1	University of Turin	GCA_001561935.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/561/935/GCF_001561935.1_ASM156193v1	na	na	na	haploid	fungi	29140916	29140916	47.500000	0	92	92	University of Turin	Annotation submitted by University of Turin	2021-04-20	9629	9629	0	26729047
GCF_015533775.1	PRJNA691334	SAMN14669941	JABCSE000000000.1	reference genome	5082	5082	Penicillium roqueforti	strain=LCP96 04111	na	latest	Scaffold	Major	Full	2020-11-17	ASM1553377v1	Utrecht University	GCA_015533775.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/533/775/GCF_015533775.1_ASM1553377v1	na	na	na	haploid	fungi	26941230	26940775	48.500000	0	83	83	Utrecht University	Annotation submitted by Utrecht University	2023-04-03	9810	9781	29	32846509
GCF_028828765.1	PRJNA973687	SAMN30185308	JAQJZN000000000.1	reference genome	5083	5083	Penicillium canescens	strain=IBT 15451	na	latest	Contig	Major	Full	2023-02-23	ASM2882876v1	Aalborg University	GCA_028828765.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/828/765/GCF_028828765.1_ASM2882876v1	na	na	na	haploid	fungi	46284494	46284494	49.000000	0	15	15	Aalborg University	Annotation submitted by Aalborg University	2023-07-28	14207	14180	27	36726175
GCF_041956765.1	PRJNA1175695	SAMN39446921	JAZBRV000000000.1	reference genome	5088	5088	Thermoascus crustaceus	strain=CBS 181.67	na	latest	Scaffold	Major	Full	2024-09-16	Thecr1	DOE Joint Genome Institute	GCA_041956765.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/041/956/765/GCF_041956765.1_Thecr1	na	assembly from type material	na	haploid	fungi	31412805	30763865	50.000000	0	35	449	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-10-23	10634	10411	223	39266695
GCF_033870435.1	PRJNA1128257	SAMN20088412	na	reference genome	5147	5147	Sordaria macrospora	strain=SN1693	na	latest	Complete Genome	Major	Full	2023-11-21	ASM3387043v1	Ruhr-University Bochum	GCA_033870435.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/033/870/435/GCF_033870435.1_ASM3387043v1	na	na	na	haploid	fungi	39444728	39444728	52.000000	7	7	7	Ruhr-University Bochum	Annotation submitted by Ruhr-University Bochum	2024-06-26	10804	10309	495	38112417
GCF_021052385.1	PRJNA801213	SAMN14510447	JAIFAB000000000.1	reference genome	5210	5210	Filobasidium floriforme	strain=CBS 6241	na	latest	Contig	Major	Full	2021-12-03	Filflo1	DOE Joint Genome Institute	GCA_021052385.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/052/385/GCF_021052385.1_Filflo1	na	assembly from type material	na	haploid	fungi	27469088	27469088	53.000000	0	42	42	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-03-14	8420	8301	116	34791213
GCF_000328475.2	PRJNA14007	SAMN02900459	AACP00000000.2	reference genome	5270	5270	Mycosarcoma maydis	strain=521	na	latest	Chromosome	Major	Full	2015-02-18	Umaydis521_2.0	Broad Institute	GCA_000328475.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/328/475/GCF_000328475.2_Umaydis521_2.0	na	assembly designated as neotype	na	haploid	fungi	19664356	19641656	54.000000	23	27	254	Broad Institute	Annotation submitted by Broad Institute	2024-12-03	6907	6762	145	17080091
GCF_014466165.1	PRJNA670761	SAMN15594696	JACETU000000000.1	reference genome	5322	5322	Pleurotus ostreatus	strain=PC9	na	latest	Contig	Major	Full	2020-09-03	ASM1446616v1	Academia Sinica	GCA_014466165.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/466/165/GCF_014466165.1_ASM1446616v1	na	na	na	haploid	fungi	34897228	34897228	51.000000	0	16	16	Academia Sinica	Annotation submitted by Academia Sinica	2023-12-29	11849	11694	155	18248422
GCF_021015755.1	PRJNA801212	SAMN08778769	JABWDW000000000.1	reference genome	5353	5353	Lentinula edodes	strain=Le(Bin) 0899 ss11	na	latest	Contig	Major	Full	2021-11-30	Lenedo1	DOE Joint Genome Institute	GCA_021015755.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/015/755/GCF_021015755.1_Lenedo1	na	na	na	haploid	fungi	45594472	45594472	46.000000	0	128	128	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-01-28	14392	14078	311	na
GCF_004011695.2	PRJNA691330	SAMN10613128	na	reference genome	5454	5454	Ascochyta rabiei	na	Me14	latest	Complete Genome	Major	Full	2022-08-25	ASM401169v2	Curtin University	GCA_004011695.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/011/695/GCF_004011695.2_ASM401169v2	na	na	na	haploid	fungi	40846718	40846718	49.000000	22	22	22	Curtin University	Annotation submitted by Curtin University	2023-09-19	11642	11525	105	32345704
GCF_014235925.2	PRJNA670759	SAMN12683944	VUJX00000000.2	reference genome	5467	5467	Colletotrichum truncatum	strain=CMES1059	na	latest	Contig	Major	Full	2024-07-22	CTRU02v2	University of Salamanca	GCA_014235925.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/235/925/GCF_014235925.2_CTRU02v2	na	na	na	haploid	fungi	57008971	57008971	49.500000	0	22	22	University of Salamanca	Annotation submitted by University of Salamanca	2024-12-07	15733	15733	0	32352862
GCF_010111755.1	PRJNA1120907	SAMN13613350	na	reference genome	5478	5478	Nakaseomyces glabratus	strain=ATCC 2001	na	latest	Chromosome	Major	Full	2020-02-03	ASM1011175v1	Johns Hopkins Medical Institution	GCA_010111755.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/111/755/GCF_010111755.1_ASM1011175v1	na	assembly from type material	na	haploid	fungi	12726212	12725212	39.000000	13	13	13	Johns Hopkins Medical Institution	Annotation submitted by Johns Hopkins Medical Institution	2025-07-15	5508	5258	239	32068314
GCF_000182765.1	PRJNA12179	na	na	reference genome	5480	5480	Candida parapsilosis	strain=CDC317	na	latest	Contig	Major	Full	2011-10-26	ASM18276v2	Wellcome Trust Sanger Institute	GCA_000182765.2	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/182/765/GCF_000182765.1_ASM18276v2	na	na	na	haploid	fungi	12998393	12998393	38.500000	0	8	8	Wellcome Trust Sanger Institute	Annotation submitted by Wellcome Trust Sanger Institute	2023-04-03	5950	5827	97	7521869;7545927;7715605;11071936;11923346;15133118;15449175;15657051
GCF_008704595.1	PRJNA629604	SAMN11490865	SWFT00000000.1	reference genome	5481	5481	Diutina rugosa	strain=CBS 613	na	latest	Scaffold	Major	Full	2019-09-26	ASM870459v1	Centre for Genomic Regulation	GCA_008704595.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/704/595/GCF_008704595.1_ASM870459v1	na	assembly from type material	na	haploid	fungi	13445959	13433795	49.500000	0	169	169	Centre for Genomic Regulation	Annotation submitted by Centre for Genomic Regulation	2020-05-06	5819	5815	0	31575637
GCF_020509005.1	PRJNA801200	SAMN12769558	na	reference genome	5499	5499	Fulvia fulva	strain=Race5_Kim	na	latest	Complete Genome	Major	Full	2022-01-24	Cfulv_R5_v5	University of California	GCA_020509005.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/509/005/GCF_020509005.1_Cfulv_R5_v5	na	na	na	haploid	fungi	67169167	67169167	49.000000	14	14	14	University of California	Annotation submitted by University of California	2023-09-11	14993	14993	0	35471194
GCF_041956635.1	PRJNA1175693	SAMN39447025	JAZGRO000000000.1	reference genome	5541	5541	Thermomyces lanuginosus	strain=ATCC 200065	na	latest	Scaffold	Major	Full	2024-09-16	Thela1	DOE Joint Genome Institute	GCA_041956635.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/041/956/635/GCF_041956635.1_Thela1	na	na	na	haploid	fungi	19915574	19461585	52.000000	0	49	385	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-10-23	8214	8117	96	39266695
GCF_001642055.1	PRJNA342680	SAMN02745592	LXPP00000000.1	reference genome	5599	5599	Alternaria alternata	strain=SRC1lrK2f	na	latest	Scaffold	Major	Full	2016-05-11	Altal1	DOE Joint Genome Institute	GCA_001642055.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/642/055/GCF_001642055.1_Altal1	na	na	na	haploid	fungi	32990834	32986874	51.500000	0	79	91	NCBI RefSeq	Annotation submitted by NCBI RefSeq	2016-09-26	13577	13466	106	na
GCF_036630325.1	PRJNA1105965	SAMN32066506	na	reference genome	6039	6039	Vairimorpha necatrix	na	Illinois isolate	latest	Complete Genome	Major	Full	2024-05-23	ASM3663032v1	Umea University	GCA_036630325.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/036/630/325/GCF_036630325.1_ASM3663032v1	na	na	na	haploid	fungi	15005441	15005441	28.500000	12	12	12	Umea University	Annotation submitted by Umea University	2024-05-23	3214	3079	135	38166563
GCF_011074865.1	PRJNA691332	SAMN12257692	na	reference genome	13502	13502	Brettanomyces nanus	strain=CBS 1945	na	latest	Complete Genome	Major	Full	2020-12-03	ASM1107486v2	Australian Wine Research Institute	GCA_011074865.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/074/865/GCF_011074865.1_ASM1107486v2	na	assembly from type material	na	haploid	fungi	10117252	10117252	41.500000	4	4	4	Australian Wine Research Institute	Annotation submitted by Australian Wine Research Institute	2021-02-13	4823	4711	112	na
GCF_000237345.1	PRJNA79343	SAMEA2271985	na	reference genome	27288	27288	Naumovozyma castellii	strain=type strain:CBS 4309	na	latest	Chromosome	Major	Full	2011-08-01	ASM23734v1	Wolfe Laboratory, Smurfit Institute of Genetics, Trinity College Dublin	GCA_000237345.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/237/345/GCF_000237345.1_ASM23734v1	na	assembly from type material	na	haploid	fungi	11219539	11219419	37.000000	10	10	10	Wolfe Laboratory, Smurfit Institute of Genetics, Trinity College Dublin	Annotation submitted by Wolfe Laboratory, Smurfit Institute of Genetics, Trinity College Dublin	2025-07-15	5867	5589	278	22123960
GCF_002079055.1	PRJNA625777	SAMEA2757769	na	reference genome	27291	27291	Saccharomyces paradoxus	strain=CBS432	na	latest	Chromosome	Major	Full	2017-03-21	ASM207905v1	SC	GCA_002079055.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/079/055/GCF_002079055.1_ASM207905v1	na	assembly designated as neotype	na	haploid	fungi	12021328	12003971	38.500000	16	16	16	SC	Annotation submitted by SC	2025-07-15	5840	5538	302	22830625;28416820
GCF_000769745.1	PRJNA319326	SAMN02928573	JQFZ00000000.1	reference genome	27334	27334	Penicillium expansum	strain=MD-8	na	latest	Contig	Major	Full	2014-10-28	ASM76974v1	Center for Genomic Regulation (CRG)	GCA_000769745.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/769/745/GCF_000769745.1_ASM76974v1	na	na	na	haploid	fungi	32356048	32356048	47.500000	0	382	382	Center for Genomic Regulation (CRG)	Annotation submitted by Center for Genomic Regulation (CRG)	2017-08-28	11060	11060	0	25338147
GCF_030867785.1	PRJNA1032067	SAMN05442906	JAHMHS000000000.1	reference genome	27357	27357	Colletotrichum acutatum	strain=CBS 112980	na	latest	Contig	Major	Full	2023-08-24	Colac2	DOE Joint Genome Institute	GCA_030867785.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/867/785/GCF_030867785.1_Colac2	na	na	na	haploid	fungi	49057477	49057477	52.000000	0	389	389	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2023-10-30	15371	15032	334	na
GCF_900007245.1	PRJNA1073845	SAMEA3494976	CXVZ00000000.1	reference genome	28549	28549	Priceomyces carsonii	strain=CBS4050	na	latest	Scaffold	Major	Full	2023-06-12	AQF_AC_PRJEB9495_v1	Genoscope CEA	GCA_900007245.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/007/245/GCF_900007245.1_AQF_AC_PRJEB9495_v1	na	na	na	haploid	fungi	11764505	11666631	37.000000	0	10	90	Genoscope CEA	Annotation submitted by Genoscope CEA	2024-02-07	6179	6179	0	na
GCF_041956625.1	PRJNA1175692	SAMN39447024	JAZGTC000000000.1	reference genome	28565	28565	Thermomyces dupontii	strain=NRRL 2155	na	latest	Scaffold	Major	Full	2024-09-16	Talth1	DOE Joint Genome Institute	GCA_041956625.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/041/956/625/GCF_041956625.1_Talth1	na	assembly from type material	na	haploid	fungi	19833760	19807748	53.000000	0	28	54	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-10-23	7652	7558	93	39266695
GCF_000002515.2	PRJNA12377	SAMEA3138170	na	reference genome	28985	28985	Kluyveromyces lactis	strain=NRRL Y-1140	na	latest	Complete Genome	Major	Full	2004-07-02	ASM251v1	Genolevures Consortium	GCA_000002515.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/515/GCF_000002515.2_ASM251v1	na	na	na	haploid	fungi	10689156	10689156	39.000000	6	6	6	Genolevures Consortium	Annotation submitted by Genolevures Consortium	2025-07-15	5335	5084	251	15229592;15691736
GCF_028829585.1	PRJNA973687	SAMN30185383	JAQKAQ000000000.1	reference genome	29845	29845	Penicillium vulpinum	strain=IBT 29486	na	latest	Contig	Major	Full	2023-02-23	ASM2882958v1	Aalborg University	GCA_028829585.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/829/585/GCF_028829585.1_ASM2882958v1	na	na	na	haploid	fungi	31511571	31511571	47.500000	0	6	6	Aalborg University	Annotation submitted by Aalborg University	2023-06-12	11521	11521	0	36726175
GCF_025094135.1	PRJNA895885	SAMN10864749	JALPTJ000000000.1	reference genome	29922	29922	Mucor mucedo	strain=NRRL 3635	na	latest	Contig	Major	Full	2022-09-08	Mucmuc1	DOE Joint Genome Institute	GCA_025094135.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/094/135/GCF_025094135.1_Mucmuc1	na	na	na	haploid	fungi	46086937	46086937	36.500000	0	455	455	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-11-01	14226	14042	183	35996588
GCF_023168085.1	PRJNA1120879	SAMD00429430	BQKW00000000.1	reference genome	33203	33203	Purpureocillium lilacinum	strain=CBS 284.36	na	latest	Contig	Major	Full	2022-04-01	PurlilCBS_1.0	Medical Mycology Research Center	GCA_023168085.2	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/168/085/GCF_023168085.1_PurlilCBS_1.0	na	assembly from type material	na	haploid	fungi	38571925	38571925	58.500000	0	10	10	Medical Mycology Research Center	Annotation submitted by Medical Mycology Research Center	2024-06-10	10642	10532	110	na
GCF_034447905.1	PRJNA1073607	SAMN37882108	na	reference genome	34406	34406	Colletotrichum destructivum	strain=CBS 520.97	na	latest	Complete Genome	Major	Full	2023-12-18	ASM3444790v1	INRAE	GCA_034447905.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/034/447/905/GCF_034447905.1_ASM3444790v1	na	na	na	haploid	fungi	51750812	51750812	54.500000	12	12	12	INRAE	Annotation submitted by INRAE	2024-02-07	15627	15627	0	39166978
GCF_022264815.1	PRJNA835131	SAMN08778392	JADCUA000000000.1	reference genome	34475	34475	Rhodofomes roseus	strain=CIRM-BRFM 1785	na	latest	Contig	Major	Full	2022-02-15	Fomros1	DOE Joint Genome Institute	GCA_022264815.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/264/815/GCF_022264815.1_Fomros1	na	na	na	haploid	fungi	38369625	38369625	56.000000	0	80	80	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-05-06	13143	12986	153	33538380
GCF_020623625.1	PRJNA801202	SAMN13064121	JACTOA000000000.1	reference genome	36035	36035	Saccharomycodes ludwigii	strain=NBRC 1722	na	latest	Chromosome	Major	Full	2021-10-26	UHD_SCDLUD_16	University of Heidelberg	GCA_020623625.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/623/625/GCF_020623625.1_UHD_SCDLUD_16	na	na	na	haploid	fungi	12500424	12400424	31.000000	7	8	8	University of Heidelberg	Annotation submitted by University of Heidelberg	2025-07-15	5335	5026	309	na
GCF_019609905.1	PRJNA774197	SAMN13054494	WOUF00000000.1	reference genome	36050	36050	Fusarium poae	strain=DAOMC 252244	na	latest	Chromosome	Major	Full	2021-08-19	ASM1960990v1	Agriculture and Agri-Food Canada	GCA_019609905.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/609/905/GCF_019609905.1_ASM1960990v1	na	na	na	haploid	fungi	43859651	43859651	46.500000	4	12	12	Agriculture and Agri-Food Canada	Annotation submitted by Agriculture and Agri-Food Canada	2021-11-23	14125	13851	274	34348672
GCF_028826855.1	PRJNA973687	SAMN30185323	JAPQKM000000000.1	reference genome	36646	36646	Penicillium coprophilum	strain=IBT 35676	na	latest	Contig	Major	Full	2023-02-23	ASM2882685v1	Aalborg University	GCA_028826855.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/826/855/GCF_028826855.1_ASM2882685v1	na	na	na	haploid	fungi	29014640	29014640	48.000000	0	7	7	Aalborg University	Annotation submitted by Aalborg University	2023-06-02	10983	10982	0	36726175
GCF_016767815.1	PRJNA1128259	SAMN04018713	na	reference genome	36651	36651	Penicillium digitatum	strain=PdW03	na	latest	Complete Genome	Major	Full	2021-01-28	ASM1676781v1	Hangzhou Normal University	GCA_016767815.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/767/815/GCF_016767815.1_ASM1676781v1	na	na	na	haploid	fungi	26336737	26336737	49.000000	6	6	6	Hangzhou Normal University	Annotation submitted by Hangzhou Normal University	2024-06-26	9238	9002	236	na
GCF_028827405.1	PRJNA973687	SAMN30185325	JAPZBV000000000.1	reference genome	36656	36656	Penicillium crustosum	strain=IBT 35664	na	latest	Contig	Major	Full	2023-02-23	ASM2882740v1	Aalborg University	GCA_028827405.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/827/405/GCF_028827405.1_ASM2882740v1	na	na	na	haploid	fungi	32953279	32953279	48.000000	0	11	11	Aalborg University	Annotation submitted by Aalborg University	2023-06-06	12343	12313	0	36726175
GCF_014636115.1	PRJNA1128260	SAMN11056370	JAASFG000000000.1	reference genome	36911	36911	Clavispora lusitaniae	strain=FDAARGOS_655	na	latest	Contig	Major	Full	2020-09-18	ASM1463611v1	US Food and Drug Administration	GCA_014636115.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/636/115/GCF_014636115.1_ASM1463611v1	na	na	na	haploid	fungi	12128633	12128633	44.500000	0	8	8	US Food and Drug Administration	Annotation submitted by US Food and Drug Administration	2024-06-26	5702	5483	219	na
GCF_030384665.1	PRJNA1043637	SAMN33325380	na	reference genome	36914	36914	Lodderomyces elongisporus	strain=NRRL YB-4239	na	latest	Complete Genome	Major	Full	2023-07-02	ASM3038466v1	University of Illinois Urbana-Champaign	GCA_030384665.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/384/665/GCF_030384665.1_ASM3038466v1	na	assembly from type material	na	haploid	fungi	16086460	16086460	37.000000	8	8	8	University of Illinois Urbana-Champaign	Annotation submitted by University of Illinois Urbana-Champaign	2023-11-21	5731	5630	100	na
GCF_009556855.1	PRJNA945037	SAMN10960796	na	reference genome	37727	37727	Talaromyces marneffei	na	11CN-20-091	latest	Complete Genome	Major	Full	2019-11-05	ASM955685v1	Broad Institute	GCA_009556855.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/556/855/GCF_009556855.1_ASM955685v1	na	na	na	haploid	fungi	28198338	28198338	47.000000	8	8	8	Broad Institute	Annotation submitted by Broad Institute	2023-03-16	10066	9994	50	na
GCF_000151645.1	PRJNA49017	SAMEA2272024	CABJ00000000.1	reference genome	39416	39416	Tuber melanosporum	strain=Mel28	na	latest	Scaffold	Major	Full	2010-05-03	ASM15164v1	The French-Italian Tuber Genome Consortium	GCA_000151645.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/151/645/GCF_000151645.1_ASM15164v1	na	na	na	haploid	fungi	124945702	123533734	45.000000	0	398	4455	The French-Italian Tuber Genome Consortium	Annotation submitted by The French-Italian Tuber Genome Consortium	2022-12-20	7420	7420	0	20348908
GCF_000988165.1	PRJNA445857	SAMN02213592	JPQZ00000000.1	reference genome	40302	40302	Vairimorpha ceranae	strain=PA08 1199	na	latest	Contig	Major	Full	2015-05-05	ASM98816v1	University of Ottawa	GCA_000988165.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/988/165/GCF_000988165.1_ASM98816v1	na	na	na	haploid	fungi	5690748	5690748	25.500000	0	536	536	University of Ottawa	Annotation submitted by University of Ottawa	2018-03-31	3265	3209	37	25914091
GCF_028827395.1	PRJNA973687	SAMN30185341	JAQJAE000000000.1	reference genome	40994	40994	Penicillium hordei	strain=IBT 12815	na	latest	Contig	Major	Full	2023-02-23	ASM2882739v1	Aalborg University	GCA_028827395.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/827/395/GCF_028827395.1_ASM2882739v1	na	na	na	haploid	fungi	33792161	33792161	47.500000	0	6	6	Aalborg University	Annotation submitted by Aalborg University	2023-06-06	12337	12337	0	36726175
GCF_002237265.1	PRJNA495493	SAMN07177963	NKHU00000000.2	reference genome	41047	41047	Aspergillus thermomutatus	strain=HMR AF 39	na	latest	Contig	Major	Full	2018-09-12	ASM223726v2	University of Montreal	GCA_002237265.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/237/265/GCF_002237265.1_ASM223726v2	na	na	na	haploid	fungi	30945974	30945974	50.000000	0	647	647	University of Montreal	Annotation submitted by University of Montreal	2025-02-21	9701	9701	0	na
GCF_002847045.1	PRJNA453588	SAMN05446799	PKFS00000000.1	reference genome	41067	41067	Aspergillus candidus	strain=CBS 102.13	na	latest	Scaffold	Major	Full	2017-12-21	Aspcand1	DOE Joint Genome Institute	GCA_002847045.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/847/045/GCF_002847045.1_Aspcand1	na	na	na	haploid	fungi	27317772	27309638	52.000000	0	268	316	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-21	9803	9639	163	na
GCF_047715735.1	PRJNA1256995	SAMN05442938	JBDQZR000000000.1	reference genome	41759	41759	Aspergillus multicolor	strain=CBS 133.54	na	latest	Scaffold	Major	Full	2025-02-11	Aspmul1_1	DOE Joint Genome Institute	GCA_047715735.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/047/715/735/GCF_047715735.1_Aspmul1_1	na	assembly designated as neotype	na	haploid	fungi	35254497	35249567	50.500000	0	113	152	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-05-05	13020	12813	204	39897699
GCF_013402915.1	PRJNA670754	SAMN14605243	na	reference genome	42260	42260	Zygotorulaspora mrakii	strain=NRRL Y-6702	na	latest	Complete Genome	Major	Full	2020-07-12	ASM1340291v1	University College Dublin	GCA_013402915.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/402/915/GCF_013402915.1_ASM1340291v1	na	na	na	haploid	fungi	10412516	10412516	40.000000	8	8	8	University College Dublin	Annotation submitted by University College Dublin	2025-07-15	5246	5038	201	na
GCF_013396075.1	PRJNA670753	SAMN13683616	JAAOAV000000000.1	reference genome	42677	42677	Fusarium subglutinans	strain=NRRL 66333	na	latest	Contig	Major	Full	2020-07-10	ASM1339607v1	US Department of Agriculture, Agriculture Research Service	GCA_013396075.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/396/075/GCF_013396075.1_ASM1339607v1	na	na	na	haploid	fungi	44177197	44177197	48.000000	0	904	904	US Department of Agriculture, Agriculture Research Service	Annotation submitted by US Department of Agriculture, Agriculture Research Service	2023-12-29	14039	14039	0	33059601
GCF_024521635.1	PRJNA895876	SAMN06266975	JAJJXF000000000.1	reference genome	43433	43433	Tricharina praecox	strain=CBS 144465	na	latest	Contig	Major	Full	2022-08-04	Tripra1	DOE Joint Genome Institute	GCA_024521635.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/521/635/GCF_024521635.1_Tripra1	na	na	na	haploid	fungi	38357564	38357564	54.500000	0	104	104	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-11-01	10719	10412	304	35898177
GCF_037102585.1	PRJNA1107242	SAMD00197834	BTFZ00000000.1	reference genome	43959	43959	Saccharomycopsis crataegensis	strain=SC-9	na	latest	Scaffold	Major	Full	2023-12-26	ASM3710258v1	Uemura Lab, Graduate School of Biostudies, Kyoto University	GCA_037102585.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/037/102/585/GCF_037102585.1_ASM3710258v1	na	na	na	haploid	fungi	17100033	17099881	37.500000	0	20	20	Uemura Lab, Graduate School of Biostudies, Kyoto University	Annotation submitted by Uemura Lab, Graduate School of Biostudies, Kyoto University	2025-07-15	6419	6419	0	38150375
GCF_038497935.1	PRJNA1141535	SAMN39621396	JBBIWX000000000.1	reference genome	44089	44089	Dipodascopsis tothii	strain=CBS 759.85	na	latest	Scaffold	Major	Full	2024-04-24	Diptot1	DOE Joint Genome Institute	GCA_038497935.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/038/497/935/GCF_038497935.1_Diptot1	na	assembly from type material	na	haploid	fungi	13125970	13124235	65.500000	0	83	127	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-07-31	5897	5620	276	38638323
GCF_012971845.1	PRJNA645153	SAMN07172427	QCYV00000000.1	reference genome	45133	45133	Lasiodiplodia theobromae	strain=AM2As	na	latest	Contig	Major	Full	2020-05-04	ASM1297184v1	Beltsville Agricultural Research Center	GCA_012971845.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/971/845/GCF_012971845.1_ASM1297184v1	na	na	na	haploid	fungi	43694574	43694574	54.500000	0	296	296	Beltsville Agricultural Research Center	Annotation submitted by Beltsville Agricultural Research Center	2020-08-04	13054	13054	0	31580730
GCF_003171515.1	PRJNA1128263	SAMN07420926	NQIK00000000.2	reference genome	45151	45151	Pyrenophora tritici-repentis	strain=M4	na	latest	Chromosome	Major	Full	2021-10-07	CUR_PTRM4_2.2	Curtin University	GCA_003171515.3	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/171/515/GCF_003171515.1_CUR_PTRM4_2.2	na	na	na	haploid	fungi	40738834	40738194	51.000000	10	40	40	Curtin University	Annotation submitted by Curtin University	2024-06-26	15455	15455	0	29685100
GCF_001548555.1	PRJNA313947	SAMN04445727	na	reference genome	45286	45286	Eremothecium sinecaudum	strain=ATCC 58844	na	latest	Complete Genome	Major	Full	2016-02-04	ASM154855v1	Duke University	GCA_001548555.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/548/555/GCF_001548555.1_ASM154855v1	na	assembly from type material	na	haploid	fungi	8922523	8922523	40.000000	7	7	7	Duke University	Annotation submitted by Duke University	2025-07-15	4970	4528	442	na
GCF_024043175.1	PRJNA858129	SAMN18144506	JAFVMC000000000.1	reference genome	45303	45303	Alternaria infectoria	strain=BMP 0036	na	latest	Scaffold	Major	Full	2022-06-29	ASM2404317v1	Cornell University	GCA_024043175.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/043/175/GCF_024043175.1_ASM2404317v1	na	assembly from type material	na	haploid	fungi	36515125	36513645	50.000000	0	236	236	Cornell University	Annotation submitted by Cornell University	2022-11-01	11092	10982	110	na
GCF_002926055.2	PRJNA479898	SAMN08161437	PKFO00000000.1	reference genome	45357	45357	Candidozyma haemuli	strain=B11899	na	latest	Contig	Minor	Full	2018-02-13	CanHae_1.0	Centers for Disease Control and Prevention	GCA_002926055.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/926/055/GCF_002926055.2_CanHae_1.0	na	na	na	haploid	fungi	13274804	13274804	45.500000	0	11	11	Centers for Disease Control and Prevention	Annotation submitted by Centers for Disease Control and Prevention	2018-07-06	5409	5249	157	30559369
GCF_019049425.1	PRJNA756327	SAMN19714210	JAHMUF000000000.1	reference genome	45513	45513	Scheffersomyces spartinae	strain=ARV_011	na	latest	Contig	Major	Full	2021-06-28	ASM1904942v1	University of Minnesota - Twin Cities	GCA_019049425.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/049/425/GCF_019049425.1_ASM1904942v1	na	na	na	haploid	fungi	12132557	12132557	38.500000	0	103	103	University of Minnesota - Twin Cities	Annotation submitted by University of Minnesota - Twin Cities	2021-11-22	5268	5045	223	na
GCF_002251995.1	PRJNA453587	SAMN06765614	NDIQ00000000.1	reference genome	45607	45607	Wickerhamiella sorbophila	strain=DS02	na	latest	Contig	Major	Full	2017-08-15	ASM225199v2	KRIBB	GCA_002251995.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/251/995/GCF_002251995.1_ASM225199v2	na	na	na	haploid	fungi	8129113	8129113	48.500000	0	21	21	KRIBB	Annotation submitted by KRIBB	2018-05-01	4740	4740	0	na
GCF_038497815.1	PRJNA1141523	SAMN39621293	JBBIWZ000000000.1	reference genome	45792	45792	Lipomyces oligophaga	strain=CBS 7107	na	latest	Scaffold	Major	Full	2024-04-24	Lipoli1	DOE Joint Genome Institute	GCA_038497815.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/038/497/815/GCF_038497815.1_Lipoli1	na	assembly from type material	na	haploid	fungi	13579278	13579087	44.000000	0	28	30	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-07-31	5861	5780	81	38638323
GCF_042100115.1	PRJNA1175696	SAMN37790622	JBHGVX000000000.1	reference genome	48095	48095	Alternaria dauci	strain=A2016	na	latest	Complete Genome	Major	Full	2024-09-24	ASM4210011v1	Peking University	GCA_042100115.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/042/100/115/GCF_042100115.1_ASM4210011v1	na	na	na	haploid	fungi	34906709	34906709	50.500000	10	10	10	Peking University	Annotation submitted by Peking University	2024-10-23	10026	10026	0	na
GCF_014133895.1	PRJNA670758	SAMN14605265	na	reference genome	48254	48254	Torulaspora globosa	strain=CBS764	na	latest	Complete Genome	Major	Full	2020-08-10	ASM1413389v1	University College Dublin	GCA_014133895.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/133/895/GCF_014133895.1_ASM1413389v1	na	assembly from type material	na	haploid	fungi	9281121	9281121	46.000000	8	8	8	University College Dublin	Annotation submitted by University College Dublin	2025-07-15	5129	4930	198	na
GCF_016758785.1	PRJNA727291	SAMN10362845	JABBWO000000000.1	reference genome	48563	48563	Suillus bovinus	strain=UH-Sbo-P2	na	latest	Contig	Major	Full	2021-01-27	Suibov1	DOE Joint Genome Institute	GCA_016758785.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/758/785/GCF_016758785.1_Suibov1	na	na	na	haploid	fungi	47496138	47496138	47.000000	0	622	622	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2021-09-16	13655	13537	117	33355923
GCF_016628075.1	PRJNA727282	SAMN10362844	JABBWC000000000.1	reference genome	48578	48578	Suillus paluster	strain=FC165	na	latest	Contig	Major	Full	2021-01-13	Suipal1	DOE Joint Genome Institute	GCA_016628075.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/628/075/GCF_016628075.1_Suipal1	na	na	na	haploid	fungi	61993750	61993750	48.000000	0	996	996	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2021-09-15	16708	16585	121	33355923
GCF_016647625.1	PRJNA727283	SAMN09070715	JABBWH000000000.1	reference genome	48586	48586	Suillus subalutaceus	strain=FC151	na	latest	Contig	Major	Full	2021-01-15	Suisu1	DOE Joint Genome Institute	GCA_016647625.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/647/625/GCF_016647625.1_Suisu1	na	na	na	haploid	fungi	64971567	64971567	47.500000	0	998	998	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2021-09-15	17233	17080	135	33355923
GCF_016647635.1	PRJNA727286	SAMN05920861	JABBWG000000000.1	reference genome	48587	48587	Suillus subaureus	strain=MN1	na	latest	Contig	Major	Full	2021-01-15	Suisub1	DOE Joint Genome Institute	GCA_016647635.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/647/635/GCF_016647635.1_Suisub1	na	na	na	haploid	fungi	57660940	57660940	47.000000	0	668	668	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2021-09-15	15900	15739	150	33355923
GCF_020744475.1	PRJNA801210	SAMN05878234	JAGMUX000000000.1	reference genome	48865	48865	Fusarium redolens	strain=MPI-CAGE-AT-0023	na	latest	Contig	Major	Full	2021-11-05	Fusre1	DOE Joint Genome Institute	GCA_020744475.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/744/475/GCF_020744475.1_Fusre1	na	na	na	haploid	fungi	52563400	52563400	47.000000	0	74	74	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-01-28	17353	17049	300	na
GCF_030347475.1	PRJNA999190	SAMN31590401	JASTTC000000000.1	reference genome	51156	51156	Cadophora gregata	na	MNR1	latest	Contig	Major	Full	2023-06-22	UMN_CgA_1	University of Minnesota	GCA_030347475.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/347/475/GCF_030347475.1_UMN_CgA_1	na	na	na	haploid	fungi	47765811	47765811	46.000000	0	95	95	University of Minnesota	Annotation submitted by University of Minnesota	2023-07-27	15026	14721	305	na
GCF_029532465.1	PRJNA973627	SAMN32935022	JARPMG000000000.1	reference genome	54092	54092	Lipomyces tetrasporus	strain=NRRL Y-64009	na	latest	Contig	Major	Full	2023-03-31	Liptet1	DOE Joint Genome Institute	GCA_029532465.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/029/532/465/GCF_029532465.1_Liptet1	na	na	na	haploid	fungi	20779202	20779202	48.000000	0	18	18	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2023-05-19	8094	8004	90	na
GCF_037950935.1	PRJNA1105972	SAMN06266867	JBBJBU000000000.1	reference genome	54550	54550	Myxozyma melibiosi	strain=Phaff 52-87	na	latest	Contig	Major	Full	2024-04-03	Myxme1	DOE Joint Genome Institute	GCA_037950935.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/037/950/935/GCF_037950935.1_Myxme1	na	na	na	haploid	fungi	15330035	15330035	51.500000	0	24	24	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-05-01	6393	6299	93	na
GCF_038497795.1	PRJNA1141521	SAMN39621399	JBBIWY000000000.1	reference genome	56418	56418	Lipomyces arxii	strain=Phaff 12-163	na	latest	Scaffold	Major	Full	2024-04-24	Liparx1	DOE Joint Genome Institute	GCA_038497795.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/038/497/795/GCF_038497795.1_Liparx1	na	na	na	haploid	fungi	11916093	11914779	44.000000	0	85	104	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-07-31	5792	5729	63	38638323
GCF_020744135.1	PRJNA1120880	SAMN10362839	JAGMVI000000000.1	reference genome	56646	56646	Fusarium venenatum	strain=MPI-CAGE-CH-0201	na	latest	Contig	Major	Full	2021-11-04	Fusven1	DOE Joint Genome Institute	GCA_020744135.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/744/135/GCF_020744135.1_Fusven1	na	na	na	haploid	fungi	37452605	37452605	47.500000	0	9	9	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-06-10	13158	12844	308	na
GCF_038497905.1	PRJNA1141530	SAMN39621398	JBBIWW000000000.1	reference genome	56871	56871	Lipomyces japonicus	strain=CBS 7319	na	latest	Scaffold	Major	Full	2024-04-24	Lipjap1	DOE Joint Genome Institute	GCA_038497905.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/038/497/905/GCF_038497905.1_Lipjap1	na	assembly from type material	na	haploid	fungi	13369807	13368889	42.000000	0	172	189	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-07-31	5975	5842	132	38638323
GCF_001447935.2	PRJNA309725	SAMN03794732	LMYN00000000.1	reference genome	58627	58627	Debaryomyces fabryi	strain=CBS 789	na	latest	Contig	Minor	Full	2015-11-25	debFab1.1	University of Natural Resources and Life Sciences, Vienna	GCA_001447935.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/447/935/GCF_001447935.2_debFab1.1	na	assembly from type material	na	haploid	fungi	11695966	11695966	35.500000	0	534	534	University of Natural Resources and Life Sciences, Vienna	Annotation submitted by University of Natural Resources and Life Sciences, Vienna	2020-03-20	6025	6025	0	26847909
GCF_003025115.1	PRJNA453598	SAMN05369575	MBDI00000000.1	reference genome	58853	58853	Trichoderma citrinoviride	strain=TUCIM 6016	na	latest	Scaffold	Major	Full	2018-03-30	Trici v4.0	DOE Joint Genome Institute	GCA_003025115.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/025/115/GCF_003025115.1_Trici_v4.0	na	na	na	haploid	fungi	33215161	33131031	52.500000	0	533	754	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2018-04-27	9929	9734	195	na
GCF_003144115.1	PRJNA480019	SAMN05503900	MKCN00000000.1	reference genome	58919	58919	Tilletiopsis washingtonensis	strain=MCA 4186	na	latest	Scaffold	Major	Full	2018-05-21	Tilwa1	DOE Joint Genome Institute	GCA_003144115.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/144/115/GCF_003144115.1_Tilwa1	na	na	na	haploid	fungi	18761941	18597370	67.500000	0	38	263	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2018-07-12	7053	7005	48	29771364
GCF_028828655.1	PRJNA973687	SAMN30185381	JAQKAO000000000.1	reference genome	60171	60171	Penicillium verrucosum	strain=IBT 35672	na	latest	Contig	Major	Full	2023-02-23	ASM2882865v1	Aalborg University	GCA_028828655.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/828/655/GCF_028828655.1_ASM2882865v1	na	na	na	haploid	fungi	32831822	32831822	46.500000	0	8	8	Aalborg University	Annotation submitted by Aalborg University	2023-06-12	11555	11555	0	36726175
GCF_028829755.1	PRJNA973687	SAMN30185373	JAQKAH000000000.1	reference genome	60172	60172	Penicillium solitum	strain=IBT 25940	na	latest	Contig	Major	Full	2023-02-23	ASM2882975v1	Aalborg University	GCA_028829755.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/829/755/GCF_028829755.1_ASM2882975v1	na	na	na	haploid	fungi	33256298	33256298	48.000000	0	8	8	Aalborg University	Annotation submitted by Aalborg University	2024-06-10	12720	12720	0	36726175
GCF_903064755.1	PRJNA727468	SAMEA6153627	CAEFZW000000000.1	reference genome	61262	61262	Maudiozyma barnettii	strain=CLIB 1767	na	latest	Scaffold	Major	Full	2021-02-20	KABA2	Institut National de la Recherche Agronomique	GCA_903064755.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/903/064/755/GCF_903064755.1_KABA2	na	na	na	haploid	fungi	12616033	12549881	33.500000	0	14	14	Institut National de la Recherche Agronomique	Annotation submitted by Institut National de la Recherche Agronomique	2025-07-15	5473	5267	206	na
GCF_002104995.1	PRJNA721997	SAMN02744846	MCFD00000000.1	reference genome	61395	61395	Linderina pennispora	strain=ATCC 12442	na	latest	Contig	Major	Full	2017-04-20	Linpe1	DOE Joint Genome Institute	GCA_002104995.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/104/995/GCF_002104995.1_Linpe1	na	assembly from type material	na	haploid	fungi	26202545	26202545	54.000000	0	227	227	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-04-18	9583	9350	233	na
GCF_025024165.1	PRJNA895884	SAMN06264465	JALLKQ000000000.1	reference genome	61397	61397	Kickxella alabastrina	strain=RSA 675	na	latest	Contig	Major	Full	2022-09-07	Kicala1	DOE Joint Genome Institute	GCA_025024165.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/024/165/GCF_025024165.1_Kicala1	na	na	na	haploid	fungi	22263034	22263034	49.000000	0	215	215	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-11-01	7463	7284	179	35996588
GCF_009193585.1	PRJNA602440	SAMN05445973	STFO00000000.1	reference genome	61420	61420	Aspergillus caelatus	strain=CBS 763.97	na	latest	Scaffold	Major	Full	2019-10-18	Aspcae1	DOE Joint Genome Institute	GCA_009193585.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/193/585/GCF_009193585.1_Aspcae1	na	assembly from type material	na	haploid	fungi	40016351	40004407	47.500000	0	729	814	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-22	14157	13913	244	na
GCF_022984875.1	PRJNA858126	SAMN13172311	JAJKLD000000000.1	reference genome	63214	63214	Hypoxylon fragiforme	strain=CBS 206.31	na	latest	Contig	Major	Full	2022-04-14	Hypfra2	DOE Joint Genome Institute	GCA_022984875.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/984/875/GCF_022984875.1_Hypfra2	na	na	na	haploid	fungi	36400909	36400909	47.000000	0	15	15	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-07-16	10382	10262	117	34797921
GCF_020647795.1	PRJNA1128265	SAMN17838941	na	reference genome	63577	63577	Trichoderma atroviride	strain=P1	na	latest	Complete Genome	Major	Full	2021-10-27	ASM2064779v1	Academia Sinica	GCA_020647795.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/647/795/GCF_020647795.1_ASM2064779v1	na	na	na	haploid	fungi	37300646	37300646	48.500000	7	7	7	Academia Sinica	Annotation submitted by Academia Sinica	2024-06-26	13312	13127	185	34908505
GCF_028974085.1	PRJNA973687	SAMN30185315	JAPQKS000000000.1	reference genome	63820	63820	Penicillium chermesinum	strain=IBT 19713	na	latest	Contig	Major	Full	2023-02-23	ASM2897408v1	Aalborg University	GCA_028974085.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/974/085/GCF_028974085.1_ASM2897408v1	na	na	na	haploid	fungi	27581382	27581382	50.500000	0	10	10	Aalborg University	Annotation submitted by Aalborg University	2023-07-27	10821	10820	0	36726175
GCF_028827525.1	PRJNA973687	SAMN30185326	JAPVEA000000000.1	reference genome	63821	63821	Penicillium daleae	strain=IBT 16125	na	latest	Contig	Major	Full	2023-02-23	ASM2882752v1	Aalborg University	GCA_028827525.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/827/525/GCF_028827525.1_ASM2882752v1	na	na	na	haploid	fungi	39657045	39657045	49.000000	0	10	10	Aalborg University	Annotation submitted by Aalborg University	2023-06-06	12824	12821	0	36726175
GCF_002105155.1	PRJNA396744	SAMN05421885	MCFF00000000.1	reference genome	64571	64571	Lobosporangium transversale	strain=NRRL 3116	na	latest	Contig	Major	Full	2017-04-20	Lobtra1	DOE Joint Genome Institute	GCA_002105155.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/105/155/GCF_002105155.1_Lobtra1	na	assembly from type material	na	haploid	fungi	42768949	42768949	41.500000	0	138	138	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2017-08-29	11983	11818	165	na
GCF_025331425.1	PRJNA895889	SAMN06266976	JALLLU000000000.1	reference genome	64574	64574	Radiomyces spectabilis	strain=NRRL 2753	na	latest	Contig	Major	Full	2022-09-20	Radspe1	DOE Joint Genome Institute	GCA_025331425.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/331/425/GCF_025331425.1_Radspe1	na	assembly from type material	na	haploid	fungi	30409402	30409402	43.500000	0	36	36	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-11-01	11044	10883	161	35996588
GCF_025528875.1	PRJNA926527	SAMN05445191	JAIWZN000000000.1	reference genome	64632	64632	Mycotypha africana	strain=NRRL 2978	na	latest	Contig	Major	Full	2022-10-03	Mycafr1	DOE Joint Genome Institute	GCA_025528875.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/528/875/GCF_025528875.1_Mycafr1	na	na	na	haploid	fungi	29202882	29202882	38.000000	0	40	40	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2023-02-06	11085	10914	156	35996588
GCF_025766255.1	PRJNA926531	SAMN05444742	JAIXMT000000000.1	reference genome	64656	64656	Zychaea mexicana	strain=RSA 1403	na	latest	Contig	Major	Full	2022-10-20	Zycmex1	DOE Joint Genome Institute	GCA_025766255.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/766/255/GCF_025766255.1_Zycmex1	na	assembly from type material	na	haploid	fungi	50638590	50638590	42.000000	0	357	357	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2023-02-10	14134	13986	139	35996588
GCF_004382785.1	PRJNA1256991	SAMN08359395	PPTA00000000.1	reference genome	65468	65468	Trichoderma ghanense	strain=CCMA-1212	na	latest	Scaffold	Major	Full	2019-03-26	ASM438278v1	Embrapa Agroenergia	GCA_004382785.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/382/785/GCF_004382785.1_ASM438278v1	na	na	na	haploid	fungi	31700302	31627153	54.000000	0	50	50	Embrapa Agroenergia	Annotation submitted by Embrapa Agroenergia	2025-05-05	10428	10428	0	na
GCF_001723175.1	PRJNA858119	SAMN03106237	JRVD00000000.2	reference genome	69781	69781	Penicillium oxalicum	strain=HP7-1	na	latest	Chromosome	Major	Full	2022-04-25	ASM172317v3	Guangxi University	GCA_001723175.3	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/723/175/GCF_001723175.1_ASM172317v3	na	na	na	haploid	fungi	30795872	30793372	50.500000	8	18	18	Guangxi University	Annotation submitted by Guangxi University	2022-08-18	9964	9718	246	35499317
GCF_028829465.1	PRJNA973687	SAMN30185374	JAQKAI000000000.1	reference genome	69789	69789	Penicillium soppii	strain=IBT 18220	na	latest	Contig	Major	Full	2023-02-23	ASM2882946v1	Aalborg University	GCA_028829465.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/829/465/GCF_028829465.1_ASM2882946v1	na	assembly designated as neotype	na	haploid	fungi	32085433	32085433	48.000000	0	8	8	Aalborg University	Annotation submitted by Aalborg University	2023-06-12	12167	12167	0	36726175
GCF_028829765.1	PRJNA973687	SAMN30185384	JAQKAR000000000.1	reference genome	69791	69791	Penicillium waksmanii	strain=IBT 27052	na	latest	Contig	Major	Full	2023-02-23	ASM2882976v1	Aalborg University	GCA_028829765.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/829/765/GCF_028829765.1_ASM2882976v1	na	na	na	haploid	fungi	37575496	37575496	48.500000	0	10	10	Aalborg University	Annotation submitted by Aalborg University	2023-06-12	13502	13502	0	36726175
GCF_028974065.1	PRJNA973687	SAMN30185320	JAPQKR000000000.1	reference genome	70096	70096	Penicillium cinerascens	strain=IBT 15544	na	latest	Contig	Major	Full	2023-02-23	ASM2897406v1	Aalborg University	GCA_028974065.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/974/065/GCF_028974065.1_ASM2897406v1	na	na	na	haploid	fungi	29467041	29467041	50.500000	0	16	16	Aalborg University	Annotation submitted by Aalborg University	2023-07-27	11023	11022	0	36726175
GCF_042764415.1	PRJNA1216015	SAMN39446788	JAZGUE000000000.1	reference genome	72144	72144	Remersonia thermophila	strain=ATCC 22073	na	latest	Complete Genome	Major	Full	2024-10-10	Remth1	DOE Joint Genome Institute	GCA_042764415.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/042/764/415/GCF_042764415.1_Remth1	na	assembly from type material	na	haploid	fungi	27414229	27414229	59.500000	7	7	7	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-01-31	7763	7595	168	39266695
GCF_011692745.1	PRJNA625764	SAMN13175249	JAACJD000000000.1	reference genome	74035	74035	Arthroderma uncinatum	strain=CBS 119779	na	latest	Contig	Major	Full	2020-03-24	ASM1169274v1	Chinese Academy of Medical Science and Peking Union Medical College	GCA_011692745.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/692/745/GCF_011692745.1_ASM1169274v1	na	na	na	haploid	fungi	23563256	23563256	48.500000	0	5	5	Chinese Academy of Medical Science and Peking Union Medical College	Annotation submitted by Chinese Academy of Medical Science and Peking Union Medical College	2020-04-21	7083	7016	67	na
GCF_018404265.1	PRJNA625765	SAMD00275554	BOPL00000000.1	reference genome	75553	75553	Aspergillus viridinutans	strain=IFM 47045	na	latest	Scaffold	Major	Full	2021-03-12	Aspvir_assembly01	Medical Mycology Research Center	GCA_018404265.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/404/265/GCF_018404265.1_Aspvir_assembly01	na	na	na	haploid	fungi	34888349	34286126	46.000000	0	47	47	Medical Mycology Research Center	Annotation submitted by Medical Mycology Research Center	2025-02-22	10237	10038	199	na
GCF_003290485.1	PRJNA495494	SAMN09478194	na	reference genome	76775	76775	Malassezia restricta	strain=KCTC 27527	na	latest	Complete Genome	Major	Full	2018-07-09	ASM329048v1	Korea Polar Research Institute	GCA_003290485.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/290/485/GCF_003290485.1_ASM329048v1	na	na	na	haploid	fungi	7330907	7330907	56.000000	9	9	9	Korea Polar Research Institute	Annotation submitted by Korea Polar Research Institute	2022-04-18	4544	4406	138	na
GCF_001278385.1	PRJNA309726	SAMN03838212	LGAV00000000.1	reference genome	77020	77020	Malassezia pachydermatis	strain=CBS 1879	na	latest	Scaffold	Major	Full	2015-09-02	MalaPachy	University of Utrecht	GCA_001278385.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/278/385/GCF_001278385.1_MalaPachy	na	assembly designated as neotype	na	haploid	fungi	8150648	8149729	55.000000	0	91	91	University of Utrecht	Annotation submitted by University of Utrecht	2017-08-28	4202	4202	0	26472839
GCF_014595645.1	PRJNA756325	SAMN15772025	JACTAD000000000.1	reference genome	83186	83186	Diaporthe citri	strain=NFHF-8-4	na	latest	Contig	Major	Full	2020-09-15	ASM1459564v1	Huazhong Agricultural University	GCA_014595645.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/595/645/GCF_014595645.1_ASM1459564v1	na	na	na	haploid	fungi	63685968	63685968	46.500000	0	34	34	Huazhong Agricultural University	Annotation submitted by Huazhong Agricultural University	2021-11-22	15918	15761	157	na
GCF_019650295.1	PRJNA774201	SAMD00262043	BOLY00000000.1	reference genome	84275	84275	Cercospora kikuchii	strain=MAFF 305040	na	latest	Contig	Major	Full	2021-07-08	Ck_assembly01	Japan International Research Center for Agricultural Sciences	GCA_019650295.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/650/295/GCF_019650295.1_Ck_assembly01	na	na	na	haploid	fungi	34440063	34440063	53.000000	0	9	9	Japan International Research Center for Agricultural Sciences	Annotation submitted by Japan International Research Center for Agricultural Sciences	2021-11-23	13001	13001	0	na
GCF_000747765.1	PRJNA302316	SAMD00018595	BBIZ00000000.1	reference genome	84753	84753	Moesziomyces antarcticus	strain=JCM 10317	na	latest	Scaffold	Major	Full	2014-08-21	ASM74776v1	National Institute of Advanced Industrial Science and Technology	GCA_000747765.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/747/765/GCF_000747765.1_ASM74776v1	na	assembly from type material	na	haploid	fungi	18111965	18080654	61.000000	0	197	276	National Institute of Advanced Industrial Science and Technology	Annotation submitted by National Institute of Advanced Industrial Science and Technology	2023-12-29	6885	6764	121	25291760
GCF_041956435.1	PRJNA1175688	SAMN39446766	JBAGCS000000000.1	reference genome	85995	85995	Mycothermus thermophilus	strain=CBS 625.91	na	latest	Scaffold	Major	Full	2024-09-16	Mycthe1	DOE Joint Genome Institute	GCA_041956435.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/041/956/435/GCF_041956435.1_Mycthe1	na	assembly from type material	na	haploid	fungi	29324833	28833550	56.000000	0	25	365	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-10-23	11079	10918	161	39266695
GCF_014898465.1	PRJNA691331	SAMN10219764	RCTA00000000.1	reference genome	87229	87229	Botrytis porri	strain=MUCL 3234	na	latest	Contig	Major	Full	2020-10-20	ASM1489846v1	Wageningen University	GCA_014898465.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/898/465/GCF_014898465.1_ASM1489846v1	na	assembly from type material	na	haploid	fungi	46789968	46789968	40.000000	0	31	31	Wageningen University	Annotation submitted by Wageningen University	2021-02-12	12076	12076	0	na
GCF_041956645.1	PRJNA1175694	SAMN39447046	JAZGTB000000000.1	reference genome	89139	89139	Rasamsonia byssochlamydoides	strain=NRRL 3658	na	latest	Scaffold	Major	Full	2024-09-16	Rasby1	DOE Joint Genome Institute	GCA_041956645.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/041/956/645/GCF_041956645.1_Rasby1	na	assembly from type material	na	haploid	fungi	29320293	29309473	49.500000	0	143	542	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-10-23	10064	9923	141	39266695
GCF_025118155.1	PRJNA895886	SAMN06265828	JAIWNH000000000.1	reference genome	90255	90255	Cokeromyces recurvatus	strain=NRRL 2243	na	latest	Contig	Major	Full	2022-09-09	Cokrec1	DOE Joint Genome Institute	GCA_025118155.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/118/155/GCF_025118155.1_Cokrec1	na	assembly from type material	na	haploid	fungi	28120762	28120762	30.500000	0	85	85	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-11-01	11066	10913	151	35996588
GCF_001078395.1	PRJNA758027	SAMD00031778	BBXM00000000.2	reference genome	91492	91492	Aspergillus udagawae	strain=IFM 46973	na	latest	Scaffold	Major	Full	2021-03-12	Aud_assembly02	Medical Mycology Research Center	GCA_001078395.2	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/078/395/GCF_001078395.1_Aud_assembly02	na	assembly from type material	na	haploid	fungi	32252303	32035701	49.500000	0	17	17	Medical Mycology Research Center	Annotation submitted by Medical Mycology Research Center	2025-02-22	11009	10795	214	26251487
GCF_000836115.1	PRJNA326653	SAMN03176947	JYBY00000000.1	reference genome	91928	91928	Exophiala spinifera	strain=CBS 89968	na	latest	Scaffold	Major	Full	2015-02-23	Exop_spin_CBS89968_V1	Broad Institute	GCA_000836115.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/836/115/GCF_000836115.1_Exop_spin_CBS89968_V1	na	assembly from type material	na	haploid	fungi	32912349	32873413	51.500000	0	28	143	Broad Institute	Annotation submitted by Broad Institute	2024-01-05	12110	12049	58	na
GCF_019434415.1	PRJNA1128558	SAMN18235592	JAGRQK000000000.1	reference genome	92637	92637	Metarhizium acridum	strain=ARSEF 324	na	latest	Scaffold	Major	Full	2021-08-02	Coph_MacrARSEF324_H1_v1.0	University of Copenhagen	GCA_019434415.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/434/415/GCF_019434415.1_Coph_MacrARSEF324_H1_v1.0	na	na	na	haploid	fungi	44714781	44714658	45.500000	0	35	35	University of Copenhagen	Annotation submitted by University of Copenhagen	2024-06-26	12261	12160	101	34247231
GCF_028827675.1	PRJNA973687	SAMN30185342	JAQJAF000000000.1	reference genome	94218	94218	Penicillium lagena	strain=IBT 129212	na	latest	Contig	Major	Full	2023-02-23	ASM2882767v1	Aalborg University	GCA_028827675.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/827/675/GCF_028827675.1_ASM2882767v1	na	na	na	haploid	fungi	27859125	27859125	51.500000	0	9	9	Aalborg University	Annotation submitted by Aalborg University	2023-06-06	11858	11858	0	36726175
GCF_033439725.1	PRJNA1072701	SAMN06296183	JAUEPP000000000.1	reference genome	94610	94610	Neurospora tetraspora	strain=CBS 560.94	na	latest	Contig	Major	Full	2023-11-08	Gelte1	DOE Joint Genome Institute	GCA_033439725.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/033/439/725/GCF_033439725.1_Gelte1	na	na	na	haploid	fungi	43856413	43856413	48.500000	0	23	23	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-02-06	11717	11250	430	37820761
GCF_004000055.1	PRJNA1151047	SAMN10185917	SAEB00000000.1	reference genome	97331	97331	Arthrobotrys flagrans	strain=CBS H-5679, /ecotype=Germany	na	latest	Contig	Major	Full	2019-01-08	DF_1.0	Institute for Applied Biosciences	GCA_004000055.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/000/055/GCF_004000055.1_DF_1.0	na	na	na	haploid	fungi	36645795	36645795	45.000000	0	14	14	Institute for Applied Biosciences	Annotation submitted by Institute for Applied Biosciences	2024-09-04	9927	9897	0	30917129
GCF_001625195.1	PRJNA721991	SAMN03387934	LAYC00000000.1	reference genome	98403	98403	Drechmeria coniospora	strain=ARSEF 6962	na	latest	Chromosome	Major	Full	2016-04-24	ASM162519v1	Biotechnology Research Institute, Chinese Academy of Agricultural Sciences	GCA_001625195.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/625/195/GCF_001625195.1_ASM162519v1	na	na	na	haploid	fungi	32831003	32193096	55.000000	3	28	28	Biotechnology Research Institute, Chinese Academy of Agricultural Sciences	Annotation submitted by Biotechnology Research Institute, Chinese Academy of Agricultural Sciences	2021-04-20	8445	8236	141	26975455
GCF_025201335.1	PRJNA895887	SAMN06296463	JAIWZQ000000000.1	reference genome	101096	101096	Gilbertella persicaria	strain=CBS 190.32	na	latest	Contig	Major	Full	2022-09-14	Gilper1	DOE Joint Genome Institute	GCA_025201335.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/201/335/GCF_025201335.1_Gilper1	na	assembly from type material	na	haploid	fungi	25732466	25732466	37.000000	0	125	125	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-11-01	11124	10987	137	35996588
GCF_025024155.1	PRJNA895883	SAMN05444556	JALLKS000000000.1	reference genome	101098	101098	Gamsiella multidivaricata	strain=RSA 2152	na	latest	Contig	Major	Full	2022-09-07	Mormul1	DOE Joint Genome Institute	GCA_025024155.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/024/155/GCF_025024155.1_Mormul1	na	assembly from type material	na	haploid	fungi	37665308	37665308	49.000000	0	217	217	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-11-01	12419	12215	178	35996588
GCF_025201355.1	PRJNA895888	SAMN06265869	JAIWZO000000000.1	reference genome	101107	101107	Halteromyces radiatus	strain=CBS 162.75	na	latest	Contig	Major	Full	2022-09-14	Halrad1	DOE Joint Genome Institute	GCA_025201355.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/201/355/GCF_025201355.1_Halrad1	na	assembly from type material	na	haploid	fungi	26215609	26215609	33.500000	0	22	22	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-11-01	10305	10173	132	35996588
GCF_020647865.1	PRJNA1128265	SAMN17838724	na	reference genome	101201	101201	Trichoderma asperellum	strain=FT101	na	latest	Complete Genome	Major	Full	2021-10-27	ASM2064786v1	Academia Sinica	GCA_020647865.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/647/865/GCF_020647865.1_ASM2064786v1	na	na	na	haploid	fungi	37545380	37545380	47.000000	7	7	7	Academia Sinica	Annotation submitted by Academia Sinica	2024-06-26	12041	11857	184	34908505
GCF_022478755.1	PRJNA858123	SAMN12794154	JAJNNT000000000.1	reference genome	103429	103429	Daldinia loculata	strain=CBS 113971	na	latest	Scaffold	Major	Full	2022-03-03	Dalloc1	DOE Joint Genome Institute	GCA_022478755.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/478/755/GCF_022478755.1_Dalloc1	na	na	na	haploid	fungi	37819304	37818054	43.500000	0	260	316	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-07-15	10988	10825	153	34797921
GCF_003942205.1	PRJNA531017	SAMN10458770	RSCE00000000.1	reference genome	105984	105984	Apiotrichum porosum	strain=DSM 27194	na	latest	Contig	Major	Full	2018-12-12	ASM394220v1	Karlsruhe Institute of Technology	GCA_003942205.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/942/205/GCF_003942205.1_ASM394220v1	na	na	na	haploid	fungi	25479456	25479456	59.000000	0	32	32	Karlsruhe Institute of Technology	Annotation submitted by Karlsruhe Institute of Technology	2023-12-28	9719	9143	576	na
GCF_001792695.1	PRJNA395481	SAMN04942831	LYCR00000000.1	reference genome	109264	109264	Aspergillus bombycis	strain=NRRL26010	na	latest	Contig	Major	Full	2016-10-19	ASM179269v1	USDA-ARS-SRRC	GCA_001792695.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/792/695/GCF_001792695.1_ASM179269v1	na	assembly from type material	na	haploid	fungi	37474605	37474605	49.000000	0	450	450	USDA-ARS-SRRC	Annotation submitted by USDA-ARS-SRRC	2025-02-21	12262	12262	0	27664179
GCF_025602895.1	PRJNA926528	SAMN05920836	JAHLKK000000000.1	reference genome	110093	110093	Polychytrium aggregatum	strain=JEL109	na	latest	Contig	Major	Full	2022-10-05	Polagg1_1	DOE Joint Genome Institute	GCA_025602895.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/602/895/GCF_025602895.1_Polagg1_1	na	assembly from type material	na	haploid	fungi	64917104	64917104	57.500000	0	461	461	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2023-02-08	11051	10669	380	36037379
GCF_020360975.1	PRJNA774200	SAMN20605485	JAIZPD000000000.1	reference genome	111463	111463	Hirsutella rhossiliensis	strain=HR02	na	latest	Scaffold	Major	Full	2021-10-07	ASM2036097v1	The Institute of Vegetables and Flowers CAAS	GCA_020360975.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/360/975/GCF_020360975.1_ASM2036097v1	na	na	na	haploid	fungi	81749301	81748591	46.500000	0	39	39	The Institute of Vegetables and Flowers CAAS	Annotation submitted by The Institute of Vegetables and Flowers CAAS	2023-04-03	12181	12053	128	na
GCF_014066305.1	PRJNA670756	SAMN14934069	JACCJC000000000.1	reference genome	112416	112416	Letharia columbiana	na	WasteWater2	latest	Contig	Major	Full	2020-08-05	Lecol_v1.0	Eastern Washington University	GCA_014066305.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/066/305/GCF_014066305.1_Lecol_v1.0	na	na	na	haploid	fungi	52265057	52265057	39.500000	0	161	161	Eastern Washington University	Annotation submitted by Eastern Washington University	2020-11-09	13385	13310	75	32504651
GCF_900074925.1	PRJNA430539	SAMEA3894895	FJUY00000000.1	reference genome	112498	112498	Ramularia collo-cygni	strain=URUG2	na	latest	Scaffold	Major	Full	2017-10-29	version 1	Technische Universitat Munchen - WZW	GCA_900074925.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/074/925/GCF_900074925.1_version_1	na	na	na	haploid	fungi	32254922	31464045	51.000000	0	78	78	Technische Universitat Munchen - WZW	Annotation submitted by Technische Universitat Munchen - WZW	2018-02-01	11544	11491	53	na
GCF_022497035.1	PRJNA835137	SAMN12814233	JAJKKY000000000.1	reference genome	114800	114800	Daldinia vernicosa	strain=CBS 139.73	na	latest	Scaffold	Major	Full	2022-02-28	Dalver1	DOE Joint Genome Institute	GCA_022497035.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/497/035/GCF_022497035.1_Dalver1	na	na	na	haploid	fungi	35841789	35840562	45.500000	0	275	310	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-05-06	10827	10670	147	34797921
GCF_016647745.1	PRJNA727287	SAMN14510212	JABBWE000000000.1	reference genome	116603	116603	Suillus plorans	strain=S12	na	latest	Contig	Major	Full	2021-01-15	Suiplo1	DOE Joint Genome Institute	GCA_016647745.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/647/745/GCF_016647745.1_Suiplo1	na	na	na	haploid	fungi	51861001	51861001	47.500000	0	176	176	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2021-09-15	16525	16397	122	33355923
GCF_028827245.1	PRJNA973687	SAMN30185293	JAPZBL000000000.1	reference genome	116970	116970	Penicillium angulare	strain=IBT 27051	na	latest	Contig	Major	Full	2023-02-23	ASM2882724v1	Aalborg University	GCA_028827245.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/827/245/GCF_028827245.1_ASM2882724v1	na	assembly from type material	na	haploid	fungi	37782843	37782843	45.500000	0	12	12	Aalborg University	Annotation submitted by Aalborg University	2023-06-06	13390	13389	0	36726175
GCF_907166805.1	PRJNA758053	SAMEA7819814	CAJRGZ000000000.1	reference genome	119953	119953	Alternaria atra	na	CS162	latest	Scaffold	Major	Full	2021-05-15	ALTATR162	TECHNICAL UNIVERSITY MUNICH	GCA_907166805.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/907/166/805/GCF_907166805.1_ALTATR162	na	na	na	haploid	fungi	39606256	39267842	51.000000	0	43	43	TECHNICAL UNIVERSITY MUNICH	Annotation submitted by TECHNICAL UNIVERSITY MUNICH	2021-11-22	12172	12172	0	na
GCF_900519145.1	PRJNA727466	SAMEA4827382	ULHA00000000.1	reference genome	120017	120017	Ustilago hordei	strain=Uho2	na	latest	Contig	Major	Full	2021-02-23	Uho2_v1	Technische Universitat Munchen - WZW	GCA_900519145.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/519/145/GCF_900519145.1_Uho2_v1	na	na	na	haploid	fungi	26637005	26637005	51.000000	0	45	45	Technische Universitat Munchen - WZW	Annotation submitted by Technische Universitat Munchen - WZW	2021-09-15	7703	7449	254	na
GCF_038381095.1	PRJNA1141510	SAMN05877936	JBBWUB000000000.1	reference genome	121624	121624	Phyllosticta capitalensis	strain=CBS 128856	na	latest	Contig	Major	Full	2024-04-18	Phycap1	DOE Joint Genome Institute	GCA_038381095.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/038/381/095/GCF_038381095.1_Phycap1	na	assembly from type material	na	haploid	fungi	32461131	32461131	54.500000	0	14	14	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-07-31	12229	12062	160	31512371
GCF_013368755.1	PRJNA645155	SAMN15229550	na	reference genome	121627	121627	Talaromyces rugulosus	strain=W13939	na	latest	Complete Genome	Major	Full	2020-06-23	ASM1336875v1	Xi'an Jiaotong University	GCA_013368755.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/368/755/GCF_013368755.1_ASM1336875v1	na	na	na	haploid	fungi	35758560	35758560	47.000000	6	6	6	Xi'an Jiaotong University	Annotation submitted by Xi'an Jiaotong University	2020-08-05	11971	11901	70	33048598
GCF_033473495.1	PRJNA1120886	SAMN37303012	na	reference genome	122368	122368	Cercospora beticola	na	Cb09-40	latest	Complete Genome	Major	Full	2023-11-09	ASM3347349v1	USDA-ARS	GCA_033473495.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/033/473/495/GCF_033473495.1_ASM3347349v1	na	na	na	haploid	fungi	36074111	36074111	51.000000	10	10	10	USDA-ARS	Annotation submitted by USDA-ARS	2024-06-10	13212	13144	68	na
GCF_028826915.1	PRJNA973687	SAMN30185302	JAPQKL000000000.1	reference genome	126998	126998	Penicillium bovifimosum	strain=IBT 22155	na	latest	Contig	Major	Full	2023-02-23	ASM2882691v1	Aalborg University	GCA_028826915.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/826/915/GCF_028826915.1_ASM2882691v1	na	na	na	haploid	fungi	27188871	27188871	50.500000	0	9	9	Aalborg University	Annotation submitted by Aalborg University	2023-06-02	10403	10402	0	36726175
GCF_009193445.1	PRJNA602439	SAMN05446752	STFH00000000.1	reference genome	132259	132259	Aspergillus pseudotamarii	strain=CBS 117625	na	latest	Scaffold	Major	Full	2019-10-18	Asppset1	DOE Joint Genome Institute	GCA_009193445.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/193/445/GCF_009193445.1_Asppset1	na	na	na	haploid	fungi	38243929	38221759	48.000000	0	249	365	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-22	13663	13428	234	na
GCF_016097325.1	PRJNA801198	SAMN16825490	JADPPX000000000.1	reference genome	138277	138277	Aspergillus melleus	strain=CBS 546.65	na	latest	Contig	Major	Full	2020-12-16	ASM1609732v1	University Complutense of Madrid	GCA_016097325.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/097/325/GCF_016097325.1_ASM1609732v1	na	assembly designated as neotype	na	haploid	fungi	38850827	38850827	49.000000	0	11	11	University Complutense of Madrid	Annotation submitted by University Complutense of Madrid	2025-02-22	13060	12848	211	33260416
GCF_022376445.1	PRJNA835132	SAMN06295971	JACBKP000000000.1	reference genome	139415	139415	Fomitopsis serialis	strain=Sig1Antser10	na	latest	Contig	Major	Full	2022-02-23	Antser1	DOE Joint Genome Institute	GCA_022376445.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/376/445/GCF_022376445.1_Antser1	na	na	na	haploid	fungi	66694225	66694225	56.000000	0	893	893	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-05-06	17581	17405	173	33538380
GCF_014898295.1	PRJNA691331	SAMN10219760	RCSW00000000.1	reference genome	139641	139641	Botrytis byssoidea	strain=MUCL 94	na	latest	Contig	Major	Full	2020-10-20	ASM1489829v1	Wageningen University	GCA_014898295.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/898/295/GCF_014898295.1_ASM1489829v1	na	assembly from type material	na	haploid	fungi	42981876	42981876	40.500000	0	59	59	Wageningen University	Annotation submitted by Wageningen University	2021-02-12	12204	12204	0	na
GCF_003851025.1	PRJNA514748	SAMD00076077	BFAD00000000.1	reference genome	139825	139825	Sparassis crispa	na	na	latest	Contig	Major	Full	2018-11-07	SCP_1.1	Department of Pediatric Cardiology, Tokyo Women's Medical University	GCA_003851025.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/851/025/GCF_003851025.1_SCP_1.1	na	na	na	haploid	fungi	39020349	39020349	51.500000	0	32	32	Department of Pediatric Cardiology, Tokyo Women's Medical University	Annotation submitted by Department of Pediatric Cardiology, Tokyo Women's Medical University	2019-01-15	13339	13157	182	30375506
GCF_020906515.1	PRJNA1072635	SAMN23076029	na	reference genome	143232	143232	Vanrija pseudolonga	na	DUCC4014	latest	Complete Genome	Major	Full	2021-11-21	ASM2090651v1	Dankook University	GCA_020906515.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/906/515/GCF_020906515.1_ASM2090651v1	na	na	na	haploid	fungi	24922244	24922244	62.000000	8	8	8	Dankook University	Annotation submitted by Dankook University	2024-02-06	9775	9473	274	na
GCF_023278565.1	PRJNA858127	SAMN06211573	na	reference genome	145971	145971	Colletotrichum lupini	strain=IMI 504893	na	latest	Complete Genome	Major	Full	2022-05-09	ASM2327856v1	University of Western Brittany	GCA_023278565.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/278/565/GCF_023278565.1_ASM2327856v1	na	na	na	haploid	fungi	63407421	63407421	46.500000	11	11	11	University of Western Brittany	Annotation submitted by University of Western Brittany	2022-07-16	18681	18280	401	34402629
GCF_004355905.1	PRJNA554126	SAMN10496230	RRCK00000000.1	reference genome	148305	148305	Pyricularia grisea	strain=NI907	na	latest	Chromosome	Major	Full	2019-03-19	PgNI	Academia Sinica	GCA_004355905.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/355/905/GCF_004355905.1_PgNI	na	na	na	haploid	fungi	44557582	44462374	48.000000	4	43	43	Academia Sinica	Annotation submitted by Academia Sinica	2019-10-22	12441	12441	0	30835262
GCF_001500285.1	PRJNA342682	SAMN04009710	LKNI00000000.1	reference genome	149040	149040	Mollisia scopiformis	strain=CBS 120377	na	latest	Scaffold	Major	Full	2016-01-07	Phisc1	DOE Joint Genome Institute	GCA_001500285.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/500/285/GCF_001500285.1_Phisc1	na	na	na	haploid	fungi	48876257	48619125	47.500000	0	71	345	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2021-12-09	18648	18556	82	26950333
GCF_020726525.1	PRJNA801203	SAMN08150287	JAGPXC000000000.1	reference genome	152316	152316	Truncatella angustata	strain=MPI-SDFR-AT-0073	na	latest	Contig	Major	Full	2021-10-29	Truan1	DOE Joint Genome Institute	GCA_020726525.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/726/525/GCF_020726525.1_Truan1	na	na	na	haploid	fungi	47102642	47102642	49.500000	0	17	17	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-01-28	14971	14775	192	na
GCF_004154835.1	PRJNA531023	SAMN06205217	PDUP00000000.1	reference genome	156630	156630	Alternaria arborescens	strain=FERA 675	na	latest	Scaffold	Major	Full	2019-02-11	ASM415483v1	NIAB-East Malling Research	GCA_004154835.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/154/835/GCF_004154835.1_ASM415483v1	na	na	na	haploid	fungi	33943449	33943344	51.000000	0	325	325	Harrison Lab NIAB-EMR	Harrison Lab NIAB-EMR Release 1.01	2019-04-05	12895	12885	0	na
GCF_021901695.1	PRJNA835130	SAMN20585433	JAIUNB000000000.1	reference genome	168172	27350	Puccinia striiformis f. sp. tritici	strain=134E16A+17+33+	na	latest	Chromosome	Major	Full	2022-02-03	Pst134E36_v1_pri	Australian National University	GCA_021901695.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/901/695/GCF_021901695.1_Pst134E36_v1_pri	na	na	na	haploid	fungi	89491239	89477439	44.500000	18	184	184	Australian National University	Annotation submitted by Australian National University	2023-12-29	17813	17118	695	na
GCF_028828555.1	PRJNA973687	SAMN30185378	JAQKAL000000000.1	reference genome	168475	168475	Penicillium taxi	strain=IBT 34144	na	latest	Contig	Major	Full	2023-02-23	ASM2882855v1	Aalborg University	GCA_028828555.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/828/555/GCF_028828555.1_ASM2882855v1	na	na	na	haploid	fungi	27925195	27925195	46.000000	0	6	6	Aalborg University	Annotation submitted by Aalborg University	2023-06-12	10052	10052	0	36726175
GCF_023522795.1	PRJNA1120895	SAMN26926572	JAMBZA000000000.1	reference genome	169388	169388	Fusarium solani	strain=SB1	na	latest	Contig	Major	Full	2022-05-23	NDSU_Fsol_1.0	North Dakota State University	GCA_023522795.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/522/795/GCF_023522795.1_NDSU_Fsol_1.0	na	na	na	haploid	fungi	59379714	59379714	50.500000	0	19	19	North Dakota State University	Annotation submitted by North Dakota State University	2024-06-10	18900	18900	0	na
GCF_033847375.1	PRJNA1073605	SAMN38060657	JAWRVG000000000.1	reference genome	173218	173216	Trichoderma aggressivum f. europaeum	strain=CBS 100526	na	latest	Scaffold	Major	Full	2023-11-21	Triagg1	Utrecht University	GCA_033847375.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/033/847/375/GCF_033847375.1_Triagg1	na	assembly from type material	na	haploid	fungi	38856605	38853501	49.000000	0	295	295	Utrecht University	Annotation submitted by Utrecht University	2024-02-07	10998	10998	0	38385672
GCF_047715705.1	PRJNA1256994	SAMN05446763	JBDQZQ000000000.1	reference genome	176160	176160	Aspergillus ambiguus	strain=CBS 117.58	na	latest	Scaffold	Major	Full	2025-02-11	Aspamb1	DOE Joint Genome Institute	GCA_047715705.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/047/715/705/GCF_047715705.1_Aspamb1	na	assembly designated as neotype	na	haploid	fungi	29374911	29362761	51.500000	0	149	198	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-05-05	11236	11087	149	39897699
GCF_044049455.1	PRJNA1216017	SAMN05878052	JBFXLQ000000000.1	reference genome	176173	176173	Aspergillus lucknowensis	strain=CBS 449.75	na	latest	Scaffold	Major	Full	2024-10-29	Aspluc1	DOE Joint Genome Institute	GCA_044049455.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/044/049/455/GCF_044049455.1_Aspluc1	na	assembly designated as neotype	na	haploid	fungi	30792796	30781957	51.000000	0	232	232	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-01-31	11628	11537	88	na
GCF_028828445.1	PRJNA973687	SAMN30185361	JAQJAS000000000.1	reference genome	176176	176176	Penicillium paradoxum	strain=IBT 22861	na	latest	Contig	Major	Full	2023-02-23	ASM2882844v1	Aalborg University	GCA_028828445.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/828/445/GCF_028828445.1_ASM2882844v1	na	assembly from type material	na	haploid	fungi	28923777	28923777	48.000000	0	6	6	Aalborg University	Annotation submitted by Aalborg University	2023-06-12	9859	9857	0	36726175
GCF_044049435.1	PRJNA1216016	SAMN05878051	JBFXLR000000000.1	reference genome	176178	176178	Aspergillus pseudodeflectus	strain=CBS 756.74	na	latest	Scaffold	Major	Full	2024-10-29	Asppdef1	DOE Joint Genome Institute	GCA_044049435.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/044/049/435/GCF_044049435.1_Asppdef1	na	assembly from type material	na	haploid	fungi	39072803	39066696	51.500000	0	179	179	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-01-31	14614	14448	165	na
GCF_023757985.1	PRJNA858129	SAMN18144509	JAFVLZ000000000.1	reference genome	181014	181014	Alternaria ethzedia	strain=BMP 0044	na	latest	Scaffold	Major	Full	2022-06-17	ASM2375798v1	Cornell University	GCA_023757985.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/757/985/GCF_023757985.1_ASM2375798v1	na	assembly from type material	na	haploid	fungi	36016348	36016198	50.500000	0	579	579	Cornell University	Annotation submitted by Cornell University	2022-07-15	11096	10985	111	na
GCF_024043145.1	PRJNA858129	SAMN18144507	JAFVMB000000000.1	reference genome	181017	181017	Alternaria conjuncta	strain=BMP 0040	na	latest	Scaffold	Major	Full	2022-06-29	ASM2404314v1	Cornell University	GCA_024043145.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/043/145/GCF_024043145.1_ASM2404314v1	na	na	na	haploid	fungi	36109959	36109741	50.500000	0	175	175	Cornell University	Annotation submitted by Cornell University	2022-11-01	11758	11648	110	na
GCF_018924745.1	PRJNA756326	SAMN11081005	JAFLEJ000000000.1	reference genome	181124	181124	Marasmius oreades	na	03SP1	latest	Chromosome	Major	Full	2021-06-17	UU_Maror_2	Uppsala University	GCA_018924745.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/924/745/GCF_018924745.1_UU_Maror_2	na	na	na	haploid	fungi	44306131	44304365	47.000000	11	32	54	Uppsala University	Annotation submitted by Uppsala University	2021-11-22	13890	13700	190	34051082
GCF_041260175.1	PRJNA1175687	SAMN40926390	JBBXJM000000000.1	reference genome	181172	181172	Vanrija albida	strain=AlHP1	na	latest	Contig	Major	Full	2024-08-08	TUD_VanAlb_v1.0	TU Dresden - IHI Zittau	GCA_041260175.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/041/260/175/GCF_041260175.1_TUD_VanAlb_v1.0	na	na	na	haploid	fungi	22534050	22534050	64.000000	0	7	7	TU Dresden - IHI Zittau	Annotation submitted by TU Dresden - IHI Zittau	2024-10-23	9320	9031	289	na
GCF_017499595.1	PRJNA835128	SAMN17831733	JAFIQS000000000.2	reference genome	181762	181762	Psilocybe cubensis	strain=MGC-MH-2018	na	latest	Chromosome	Major	Full	2022-02-04	MGC_Penvy_1	Medicinal Genomics	GCA_017499595.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/499/595/GCF_017499595.1_MGC_Penvy_1	na	na	na	haploid	fungi	46389424	46387224	46.000000	13	20	20	Medicinal Genomics	Annotation submitted by Medicinal Genomics	2022-05-06	13556	13330	226	na
GCF_016861735.1	PRJNA727462	SAMD00269937	na	reference genome	182096	182096	Aspergillus chevalieri	strain=M1	na	latest	Complete Genome	Major	Full	2021-01-30	AchevalieriM1_assembly01	Fermentation Microbiology, Education and Research Center for Fermentation Studies, Faculty of Agriculture, Kagoshima University	GCA_016861735.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/861/735/GCF_016861735.1_AchevalieriM1_assembly01	na	na	na	haploid	fungi	29697343	29697343	49.500000	8	8	8	Fermentation Microbiology, Education and Research Center for Fermentation Studies, Faculty of Agriculture, Kagoshima University	Annotation submitted by Fermentation Microbiology, Education and Research Center for Fermentation Studies, Faculty of Agriculture, Kagoshima University	2025-02-22	10516	10329	187	na
GCF_028826845.1	PRJNA973687	SAMN30185312	JAPQKN000000000.1	reference genome	189055	189055	Penicillium canariense	strain=IBT 26290	na	latest	Contig	Major	Full	2023-02-23	ASM2882684v1	Aalborg University	GCA_028826845.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/826/845/GCF_028826845.1_ASM2882684v1	na	assembly from type material	na	haploid	fungi	31521451	31521451	51.500000	0	9	9	Aalborg University	Annotation submitted by Aalborg University	2023-06-02	10805	10805	0	36726175
GCF_900044065.1	PRJNA732906	SAMEA3862491	FCQH00000000.1	reference genome	192010	192010	Fusarium mangiferae	strain=MRC7560	na	latest	Scaffold	Major	Full	2016-12-06	Genome assembly version 1	Institute of Bioinformatics and Systems Biology	GCA_900044065.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/044/065/GCF_900044065.1_Genome_assembly_version_1	na	na	na	haploid	fungi	46292722	45713559	48.000000	0	254	254	Institute of Bioinformatics and Systems Biology	Annotation submitted by Institute of Bioinformatics and Systems Biology	2023-12-29	16140	15796	344	na
GCF_026873545.1	PRJNA925113	SAMN26804627	na	reference genome	195108	195108	Fusarium falciforme	strain=Fu3.1	na	latest	Complete Genome	Major	Full	2022-12-13	ASM2687354v1	Academia Sinica	GCA_026873545.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/873/545/GCF_026873545.1_ASM2687354v1	na	na	na	haploid	fungi	53563088	53563088	49.500000	14	14	14	Academia Sinica	Annotation submitted by Academia Sinica	2023-01-30	15136	14574	0	36266645
GCF_028828005.1	PRJNA973687	SAMN30185354	JAQJAP000000000.1	reference genome	203109	203109	Penicillium manginii	strain=IBT 31320	na	latest	Contig	Major	Full	2023-02-23	ASM2882800v1	Aalborg University	GCA_028828005.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/828/005/GCF_028828005.1_ASM2882800v1	na	na	na	haploid	fungi	38623079	38623079	48.500000	0	14	14	Aalborg University	Annotation submitted by Aalborg University	2023-06-12	13795	13794	0	36726175
GCF_026914185.1	PRJNA925089	SAMN28423237	na	reference genome	208348	208348	Puccinia triticina	strain=Pt15	na	latest	Complete Genome	Major	Full	2022-12-15	ASM2691418v1	Henan Agricultural University	GCA_026914185.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/914/185/GCF_026914185.1_ASM2691418v1	na	na	na	haploid	fungi	122823596	122823596	46.500000	18	18	18	Henan Agricultural University	Annotation submitted by Henan Agricultural University	2023-01-29	12736	12736	0	na
GCF_009176365.1	PRJNA602437	SAMN05446797	SWAS00000000.1	reference genome	209559	209559	Aspergillus alliaceus	strain=CBS 536.65	na	latest	Scaffold	Major	Full	2019-10-18	Aspalli1	DOE Joint Genome Institute	GCA_009176365.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/176/365/GCF_009176365.1_Aspalli1	na	assembly from type material	na	haploid	fungi	40168528	40141194	47.000000	0	331	418	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-22	13336	13098	237	na
GCF_047715535.1	PRJNA1256992	SAMN05519255	JBDRAE000000000.1	reference genome	210207	210207	Aspergillus foveolatus	strain=CBS 279.81	na	latest	Scaffold	Major	Full	2025-02-11	Aspfove1	DOE Joint Genome Institute	GCA_047715535.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/047/715/535/GCF_047715535.1_Aspfove1	na	assembly from type material	na	haploid	fungi	31779079	31742504	50.500000	0	425	503	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-05-05	11295	11114	181	39897699
GCF_000836275.1	PRJNA326655	SAMN03176949	JYBW00000000.1	reference genome	212818	212818	Exophiala mesophila	strain=CBS 40295	na	latest	Scaffold	Major	Full	2015-02-23	Exop_meso_CBS40295_V1	Broad Institute	GCA_000836275.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/836/275/GCF_000836275.1_Exop_meso_CBS40295_V1	na	assembly from type material	na	haploid	fungi	29273723	29256826	50.500000	0	9	64	Broad Institute	Annotation submitted by Broad Institute	2024-01-05	9237	9181	51	na
GCF_000091045.1	PRJNA10698	SAMN03081418	na	reference genome	214684	40410	Cryptococcus deneoformans JEC21	strain=JEC21	na	latest	Chromosome	Major	Full	2005-01-07	ASM9104v1	TIGR	GCA_000091045.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/091/045/GCF_000091045.1_ASM9104v1	na	na	na	haploid	fungi	19051922	19050125	48.500000	14	14	14	TIGR	Annotation submitted by TIGR	2018-04-11	7004	6632	134	15653466
GCF_000835515.1	PRJNA326654	SAMN03176945	JYCA00000000.1	reference genome	215243	215243	Exophiala oligosperma	strain=CBS 72588	na	latest	Scaffold	Major	Full	2015-02-23	Exop_olig_CBS72588_V1	Broad Institute	GCA_000835515.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/835/515/GCF_000835515.1_Exop_olig_CBS72588_V1	na	na	na	haploid	fungi	38224514	37920466	50.500000	0	143	287	Broad Institute	Annotation submitted by Broad Institute	2024-01-05	11938	11893	44	na
GCF_003144295.1	PRJNA479905	SAMN02787018	MCOI00000000.1	reference genome	215250	215250	Acaromyces ingoldii	strain=MCA 4198	na	latest	Scaffold	Major	Full	2018-05-21	Acain1	DOE Joint Genome Institute	GCA_003144295.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/144/295/GCF_003144295.1_Acain1	na	assembly designated as reftype	na	haploid	fungi	19330111	19314861	57.500000	0	28	69	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2018-07-06	8071	8026	45	29771364
GCF_029542785.1	PRJNA973665	SAMN27782874	na	reference genome	223818	223818	Malassezia japonica	strain=CBS 9431	na	latest	Complete Genome	Major	Full	2023-04-03	ASM2954278v1	Duke University	GCA_029542785.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/029/542/785/GCF_029542785.1_ASM2954278v1	na	assembly from type material	na	haploid	fungi	8433779	8433779	62.500000	9	9	9	Duke University	Annotation submitted by Duke University	2023-10-20	4373	4315	58	na
GCF_947241705.1	PRJNA973683	SAMEA111517679	na	reference genome	226126	114525	Saccharomyces mikatae IFO 1815	strain=IFO1815	na	latest	Complete Genome	Major	Full	2022-11-01	Smik-IFO1815	UNIVERSITY COLLEGE DUBLIN	GCA_947241705.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/947/241/705/GCF_947241705.1_Smik-IFO1815	na	assembly from type material	na	haploid	fungi	12104871	12104871	38.000000	16	16	16	UNIVERSITY COLLEGE DUBLIN	Annotation submitted by UNIVERSITY COLLEGE DUBLIN	2025-07-15	5849	5573	272	na
GCF_947243775.1	PRJNA973683	SAMEA111517677	na	reference genome	226230	114524	Saccharomyces kudriavzevii IFO 1802	strain=IFO1802	na	latest	Complete Genome	Major	Full	2022-11-01	Skud-IFO1802	UNIVERSITY COLLEGE DUBLIN	GCA_947243775.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/947/243/775/GCF_947243775.1_Skud-IFO1802	na	assembly from type material	na	haploid	fungi	11913776	11913776	40.000000	16	16	16	UNIVERSITY COLLEGE DUBLIN	Annotation submitted by UNIVERSITY COLLEGE DUBLIN	2025-07-15	5880	5603	273	na
GCF_000011425.1	PRJNA848821	SAMEA2272224	na	reference genome	227321	162425	Aspergillus nidulans FGSC A4	strain=FGSC A4	na	latest	Chromosome	Major	Full	2009-09-24	ASM1142v1	Eurofungbase (Eurofung)	GCA_000011425.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/011/425/GCF_000011425.1_ASM1142v1	na	na	na	haploid	fungi	29828291	29817824	50.500000	8	8	8	Eurofungbase (Eurofung)	Annotation submitted by Eurofungbase (Eurofung)	2023-04-13	10518	10455	0	19146970
GCF_000240135.3	PRJNA243	SAMN02953593	AACM00000000.2	reference genome	229533	5518	Fusarium graminearum PH-1	strain=PH-1; NRRL 31084	na	latest	Chromosome	Major	Full	2008-11-21	ASM24013v3	International Gibberella zeae Genomics Consortium	GCA_000240135.3	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/240/135/GCF_000240135.3_ASM24013v3	na	na	na	haploid	fungi	36458046	36223641	48.500000	4	31	433	International Gibberella zeae Genomics Consortium	Annotation submitted by International Gibberella zeae Genomics Consortium	2024-01-02	13725	13312	402	17823352
GCF_003316985.1	PRJNA576242	SAMN08667433	QKXC00000000.1	reference genome	231269	231269	Fusarium coffeatum	strain=FIESC_28	na	latest	Contig	Major	Full	2018-07-13	ASM331698v1	CSIRO	GCA_003316985.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/316/985/GCF_003316985.1_ASM331698v1	na	na	na	haploid	fungi	37769732	37769732	48.500000	0	550	550	CSIRO	Annotation submitted by CSIRO	2019-10-22	11779	11779	0	na
GCF_024043155.1	PRJNA858129	SAMN18144512	JAFVLW000000000.1	reference genome	232088	232088	Alternaria arbusti	strain=BMP 1465	na	latest	Scaffold	Major	Full	2022-06-29	ASM2404315v1	Cornell University	GCA_024043155.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/043/155/GCF_024043155.1_ASM2404315v1	na	assembly from type material	na	haploid	fungi	33977964	33977650	52.500000	0	75	75	Cornell University	Annotation submitted by Cornell University	2022-11-01	11826	11721	105	na
GCF_000149245.1	PRJNA177334	SAMN03081441	na	reference genome	235443	5207	Cryptococcus neoformans H99	strain=H99	na	latest	Chromosome	Major	Full	2014-02-07	CNA3	Broad Institute	GCA_000149245.3	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/149/245/GCF_000149245.1_CNA3	na	na	na	haploid	fungi	18891193	18891093	48.000000	14	14	14	Broad Institute	Annotation submitted by Broad Institute	2018-04-04	8338	6975	1359	24743168
GCF_001883845.1	PRJNA374862	SAMN05253255	MNUE00000000.1	reference genome	236234	236234	Diplodia corticola	strain=CBS 112549	na	latest	Scaffold	Major	Full	2016-11-18	ASM188384v1	University of Aveiro	GCA_001883845.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/883/845/GCF_001883845.1_ASM188384v1	na	assembly from type material	na	haploid	fungi	34986079	34974097	57.000000	0	181	181	University of Aveiro	Annotation submitted by University of Aveiro	2023-12-28	10831	10831	0	na
GCF_000182965.3	PRJNA14005	SAMN02953594	na	reference genome	237561	5476	Candida albicans SC5314	strain=SC5314	na	latest	Chromosome	Major	Full	2016-10-12	ASM18296v3	Stanford University	GCA_000182965.3	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/182/965/GCF_000182965.3_ASM18296v3	na	na	na	haploid	fungi	14282666	14276407	33.500000	8	8	8	CGD	CGD A22-s07-m01-r01	2022-04-18	6263	6030	215	15123810;17419877;24025428
GCF_000182895.1	PRJNA29797	SAMN02953595	AACS00000000.2	reference genome	240176	5346	Coprinopsis cinerea okayama7#130	strain=okayama7#130	na	latest	Contig	Major	Full	2010-06-16	CC3	Broad Institute	GCA_000182895.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/182/895/GCF_000182895.1_CC3	na	na	na	haploid	fungi	36150142	36150142	51.500000	13	67	67	Broad Institute	Annotation submitted by Broad Institute	2017-09-05	13657	13355	290	20547848
GCF_000002495.2	PRJNA1433	SAMN02953596	AACU00000000.3	reference genome	242507	318829	Pyricularia oryzae 70-15	strain=70-15	na	latest	Chromosome	Major	Full	2011-10-14	MG8	International Rice Blast Genome Consortium	GCA_000002495.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/495/GCF_000002495.2_MG8	na	na	na	haploid	fungi	40979121	40949321	51.500000	7	53	216	International Rice Blast Genome Consortium	Annotation submitted by International Rice Blast Genome Consortium	2019-11-29	13184	12825	228	15846337
GCF_010093505.1	PRJNA625775	SAMN05446851	JAAEJE000000000.1	reference genome	245834	245834	Neohortaea acidophila	strain=CBS 113389	na	latest	Scaffold	Major	Full	2020-01-31	Horac1	DOE Joint Genome Institute	GCA_010093505.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/093/505/GCF_010093505.1_Horac1	na	assembly from type material	na	haploid	fungi	20432448	20414840	56.500000	0	39	67	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2020-04-21	9858	9826	26	na
GCF_000149305.1	PRJNA1151041	SAMN02953598	AACW00000000.2	reference genome	246409	936053	Rhizopus delemar RA 99-880	strain=RA 99-880	na	latest	Scaffold	Major	Full	2009-05-27	RO3	Broad Institute	GCA_000149305.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/149/305/GCF_000149305.1_RO3	na	na	na	haploid	fungi	46087117	45262477	35.500000	0	81	389	Broad Institute	Annotation submitted by Broad Institute	2024-09-04	17703	17459	243	19578406
GCF_000149335.2	PRJNA16822	SAMN02953601	AAEC00000000.3	reference genome	246410	5501	Coccidioides immitis RS	strain=RS	na	latest	Scaffold	Major	Full	2009-10-29	ASM14933v2	Broad Institute	GCA_000149335.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/149/335/GCF_000149335.2_ASM14933v2	na	na	na	haploid	fungi	28947925	28947525	46.000000	0	6	10	Broad Institute	Annotation submitted by Broad Institute	2022-05-02	9905	9757	144	20516208
GCF_000836295.1	PRJNA326657	SAMN03176948	JYBX00000000.1	reference genome	253628	253628	Verruconis gallopava	strain=CBS 43764	na	latest	Scaffold	Major	Full	2015-02-23	O_gall_CBS43764	Broad Institute	GCA_000836295.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/836/295/GCF_000836295.1_O_gall_CBS43764	na	assembly from type material	na	haploid	fungi	31780469	31348514	49.000000	0	367	565	Broad Institute	Annotation submitted by Broad Institute	2024-01-05	9871	9818	48	na
GCF_001642475.1	PRJNA342681	SAMN04498468	LVKK00000000.1	reference genome	254056	254056	Fonsecaea monophora	strain=CBS 269.37	na	latest	Contig	Major	Full	2016-05-11	ASM164247v1	Federal University of Parana	GCA_001642475.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/642/475/GCF_001642475.1_ASM164247v1	na	assembly from type material	na	haploid	fungi	35229797	35229797	52.000000	0	324	324	Federal University of Parana	Annotation submitted by Federal University of Parana	2017-10-03	12021	11984	37	na
GCF_004022145.1	PRJNA531022	SAMN08778357	RCNU00000000.1	reference genome	264951	264951	Paecilomyces variotii	strain=CBS 101075	na	latest	Contig	Major	Full	2019-01-14	Paevar1	DOE Joint Genome Institute	GCA_004022145.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/022/145/GCF_004022145.1_Paevar1	na	assembly from heterotypic synonym type material	na	haploid	fungi	30105809	30105809	46.500000	0	86	86	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2019-04-05	9415	9270	142	30619145
GCF_028829835.1	PRJNA973687	SAMN30185355	JAQJZX000000000.1	reference genome	268346	268346	Penicillium mononematosum	strain=IBT 11891	na	latest	Contig	Major	Full	2023-02-23	ASM2882983v1	Aalborg University	GCA_028829835.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/829/835/GCF_028829835.1_ASM2882983v1	na	na	na	haploid	fungi	30158902	30158902	48.500000	0	4	4	Aalborg University	Annotation submitted by Aalborg University	2023-06-12	11810	11810	0	36726175
GCF_045282275.1	PRJNA1216019	SAMN36816211	JBEVYE000000000.1	reference genome	273131	273131	Nakaseomyces bracarensis	strain=CBM3	na	latest	Contig	Major	Full	2024-11-25	CBM3	BSC	GCA_045282275.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/045/282/275/GCF_045282275.1_CBM3	na	na	na	haploid	fungi	12739700	12739700	37.000000	0	15	15	BSC	Annotation submitted by BSC	2025-07-15	5179	5179	0	na
GCF_017655625.1	PRJNA1151048	SAMN17016193	JAEOAQ000000000.1	reference genome	273372	273372	Candida metapsilosis	strain=BP57	na	latest	Scaffold	Major	Full	2021-04-01	BP57	Centre for Genomic Regulation	GCA_017655625.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/655/625/GCF_017655625.1_BP57	na	na	na	haploid	fungi	13093275	13093264	38.000000	0	9	9	Centre for Genomic Regulation	Annotation submitted by Centre for Genomic Regulation	2024-09-04	5743	5726	0	na
GCF_036370985.1	PRJNA1105962	SAMN33355704	JARZAD000000000.1	reference genome	278026	278026	Arxiozyma heterogenica	strain=weizmannii	na	latest	Contig	Major	Full	2024-02-05	Kaz3	Weizmann Institute of Science	GCA_036370985.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/036/370/985/GCF_036370985.1_Kaz3	na	na	na	haploid	fungi	14370535	14370535	30.500000	0	33	33	Weizmann Institute of Science	Annotation submitted by Weizmann Institute of Science	2025-07-15	5441	5205	229	na
GCF_030864355.1	PRJNA1032435	SAMD00597898	na	reference genome	279322	279322	Cutaneotrichosporon cavernicola	strain=HIS019	na	latest	Complete Genome	Major	Full	2023-06-24	ASM3086435v1	Tokyo University of Agriculture	GCA_030864355.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/864/355/GCF_030864355.1_ASM3086435v1	na	assembly from type material	na	haploid	fungi	20237334	20237334	58.500000	8	8	8	Tokyo University of Agriculture	Annotation submitted by Tokyo University of Agriculture	2023-11-01	7753	7753	0	37821828
GCF_005498985.1	PRJNA554127	SAMN10959236	SRRM00000000.1	reference genome	280036	280036	Sporisorium graminicola	strain=CBS 10092	na	latest	Chromosome	Major	Full	2019-06-06	PGRAM_IIB_1.0	University of Liverpool, Institute of Integrative Biology	GCA_005498985.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/498/985/GCF_005498985.1_PGRAM_IIB_1.0	na	assembly from type material	na	haploid	fungi	19565848	19565448	56.500000	22	22	22	University of Liverpool, Institute of Integrative Biology	Annotation submitted by University of Liverpool, Institute of Integrative Biology	2019-07-17	6602	6591	0	na
GCF_023757995.1	PRJNA858129	SAMN18144510	JAFVLY000000000.1	reference genome	283354	283354	Alternaria metachromatica	strain=BMP 0045	na	latest	Scaffold	Major	Full	2022-06-17	ASM2375799v1	Cornell University	GCA_023757995.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/757/995/GCF_023757995.1_ASM2375799v1	na	assembly from type material	na	haploid	fungi	37283841	37283645	50.000000	0	189	189	Cornell University	Annotation submitted by Cornell University	2022-07-15	11107	11000	107	na
GCF_000149385.1	PRJNA19119	SAMN02953604	AAEY00000000.1	na	283643	40410	Cryptococcus deneoformans B-3501A	strain=B-3501A	na	latest	Chromosome	Major	Full	2004-07-16	ASM14938v1	Stanford University	GCA_000149385.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/149/385/GCF_000149385.1_ASM14938v1	na	na	na	haploid	fungi	19699782	18519482	48.500000	14	14	70	Stanford University	Annotation submitted by Stanford University	2023-09-13	6609	6500	109	15653466
GCF_000006445.2	PRJNA12410	SAMEA3138183	na	reference genome	284592	4959	Debaryomyces hansenii CBS767	strain=CBS767	na	latest	Chromosome	Major	Full	2008-09-16	ASM644v2	Genolevures Consortium	GCA_000006445.2	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/445/GCF_000006445.2_ASM644v2	na	assembly from type material	na	haploid	fungi	12152486	12151761	36.500000	7	7	7	Genolevures Consortium	Annotation submitted by Genolevures Consortium	2021-05-25	6520	6282	236	15229592;18673395
GCF_000091025.4	PRJNA10623	SAMN03081415	na	reference genome	284811	33169	Eremothecium gossypii ATCC 10895	strain=ATCC 10895	na	latest	Complete Genome	Major	Full	2010-10-18	ASM9102v4	Biozentrum, University of Basel, Switzerland	GCA_000091025.4	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/091/025/GCF_000091025.4_ASM9102v4	na	na	na	haploid	fungi	9095748	9095748	52.000000	7	7	7	Biozentrum, University of Basel, Switzerland	Annotation submitted by Biozentrum, University of Basel, Switzerland	2025-07-15	5317	4776	538	15001715
GCF_000091225.2	PRJNA155	SAMEA3138295	na	reference genome	284813	6035	Encephalitozoon cuniculi GB-M1	na	GB-M1	latest	Chromosome	Major	Full	2017-03-09	ASM9122v2	Genoscope	GCA_000091225.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/091/225/GCF_000091225.2_ASM9122v2	na	na	na	haploid	fungi	2497519	2496719	47.500000	11	11	11	Genoscope	Annotation submitted by Genoscope	2022-12-22	2155	2122	33	11719806;20003517
GCF_035610405.1	PRJNA1073831	SAMN37476331	na	reference genome	291208	291208	Australozyma saopauloensis	strain=19XY460	na	latest	Complete Genome	Major	Full	2024-01-12	ASM3561040v1	Peking Union Medical College Hospital	GCA_035610405.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/035/610/405/GCF_035610405.1_ASM3561040v1	na	na	na	haploid	fungi	12068158	12068158	44.500000	8	8	8	Peking Union Medical College Hospital	Annotation submitted by Peking Union Medical College Hospital	2024-02-14	5187	4994	193	na
GCF_028827145.1	PRJNA973687	SAMN30185322	JAPZBT000000000.1	reference genome	293559	293559	Penicillium concentricum	strain=IBT 3081	na	latest	Contig	Major	Full	2023-02-23	ASM2882714v1	Aalborg University	GCA_028827145.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/827/145/GCF_028827145.1_ASM2882714v1	na	na	na	haploid	fungi	29963931	29963931	48.500000	0	6	6	Aalborg University	Annotation submitted by Aalborg University	2023-06-20	11702	11702	0	36726175
GCF_010724455.1	PRJNA625765	SAMD00166943	BLKH00000000.1	reference genome	293939	293939	Aspergillus lentulus	strain=IFM 58399	na	latest	Scaffold	Major	Full	2020-02-04	ASM1072445v1	Medical Mycology Research Center	GCA_010724455.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/724/455/GCF_010724455.1_ASM1072445v1	na	na	na	haploid	fungi	30229310	30225830	50.000000	0	760	760	Medical Mycology Research Center	Annotation submitted by Medical Mycology Research Center	2025-02-22	10506	10293	213	na
GCF_000149425.1	PRJNA19593	SAMN02953607	AAFM00000000.1	reference genome	294746	4929	Meyerozyma guilliermondii ATCC 6260	strain=ATCC 6260	na	latest	Scaffold	Major	Full	2007-05-08	ASM14942v1	Broad Institute	GCA_000149425.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/149/425/GCF_000149425.1_ASM14942v1	na	assembly from heterotypic synonym type material	na	haploid	fungi	10609954	10574537	44.000000	0	9	71	Broad Institute	Annotation submitted by Broad Institute	2023-11-13	6062	5920	136	19465905
GCF_000006335.3	PRJNA39569	SAMN02953608	AAFN00000000.2	reference genome	294747	5482	Candida tropicalis MYA-3404	strain=MYA-3404	na	latest	Scaffold	Minor	Full	2009-06-18	ASM633v3	Broad Institute	GCA_000006335.3	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/335/GCF_000006335.3_ASM633v3	na	na	na	haploid	fungi	14579835	14525295	33.000000	0	23	127	Broad Institute	Annotation submitted by Broad Institute	2018-04-11	6441	6254	186	19465905
GCF_002954075.1	PRJNA1072634	SAMN02953610	na	reference genome	294750	1859096	Cryptococcus deuterogattii R265	na	R265	latest	Chromosome	Major	Full	2018-02-27	C. deuterogattii_R265_chr	Jawaharlal Nehru Centre for Advanced Scientific Research	GCA_002954075.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/954/075/GCF_002954075.1_C._deuterogattii_R265_chr	na	assembly from type material	na	haploid	fungi	17550122	17549805	48.000000	14	14	14	Jawaharlal Nehru Centre for Advanced Scientific Research	Annotation submitted by Jawaharlal Nehru Centre for Advanced Scientific Research	2024-02-14	6673	6408	199	21304167;29507212
GCF_023758025.1	PRJNA858129	SAMN18144511	JAFVLX000000000.1	reference genome	297637	297637	Alternaria triticimaculans	strain=BMP 0046	na	latest	Scaffold	Major	Full	2022-06-17	ASM2375802v1	Cornell University	GCA_023758025.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/758/025/GCF_023758025.1_ASM2375802v1	na	assembly from type material	na	haploid	fungi	36788567	36788547	50.000000	0	236	236	Cornell University	Annotation submitted by Cornell University	2022-07-15	11086	10976	110	na
GCF_010093625.1	PRJNA625773	SAMN05660957	JAAEJG000000000.1	reference genome	301207	301207	Macroventuria anomochaeta	strain=CBS 525.71	na	latest	Scaffold	Major	Full	2020-01-31	Macan1	DOE Joint Genome Institute	GCA_010093625.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/093/625/GCF_010093625.1_Macan1	na	assembly from type material	na	haploid	fungi	33336106	32961411	52.500000	0	75	398	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2020-04-21	13082	12940	136	na
GCF_028827735.1	PRJNA973687	SAMN30185348	JAQJAK000000000.1	reference genome	303699	303699	Penicillium macrosclerotiorum	strain=IBT 26536	na	latest	Contig	Major	Full	2023-02-23	ASM2882773v1	Aalborg University	GCA_028827735.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/827/735/GCF_028827735.1_ASM2882773v1	na	na	na	haploid	fungi	33645934	33645934	49.500000	0	12	12	Aalborg University	Annotation submitted by Aalborg University	2023-06-12	11713	11713	0	36726175
GCF_000143365.1	PRJNA16821	SAMN02953614	AAFU00000000.1	reference genome	306901	38033	Chaetomium globosum CBS 148.51	strain=CBS 148.51	na	latest	Scaffold	Major	Full	2006-02-17	ASM14336v1	The Genome Sequencing Platform, The Genome Assembly Team	GCA_000143365.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/143/365/GCF_000143365.1_ASM14336v1	na	na	na	haploid	fungi	34276485	33726808	56.000000	0	21	1228	The Genome Sequencing Platform, The Genome Assembly Team	Annotation submitted by The Genome Sequencing Platform, The Genome Assembly Team	2021-11-15	11224	11040	182	na
GCF_010094085.1	PRJNA625779	SAMN02745974	JAAEJA000000000.1	reference genome	318751	318751	Westerdykella ornata	strain=CBS 379.55	na	latest	Scaffold	Major	Full	2020-01-31	Wesor1	DOE Joint Genome Institute	GCA_010094085.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/094/085/GCF_010094085.1_Wesor1	na	assembly from type material	na	haploid	fungi	26979746	26898023	53.000000	0	94	208	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2020-04-27	10501	10405	94	na
GCF_000146915.1	PRJNA21049	SAMN02953619	AAGI00000000.1	reference genome	321614	13684	Parastagonospora nodorum SN15	strain=SN15	na	latest	Scaffold	Major	Full	2007-11-20	ASM14691v2	Broad Institute	GCA_000146915.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/146/915/GCF_000146915.1_ASM14691v2	na	na	na	haploid	fungi	37164226	36999838	50.500000	0	107	493	Broad Institute	Annotation submitted by Broad Institute	2023-04-03	16114	15990	96	18024570
GCF_000209165.1	PRJNA18881	SAMN02746101	AAVQ00000000.1	reference genome	322104	4924	Scheffersomyces stipitis CBS 6054	strain=CBS 6054	na	latest	Chromosome	Major	Full	2007-02-26	ASM20916v1	DOE Joint Genome Institute	GCA_000209165.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/209/165/GCF_000209165.1_ASM20916v1	na	na	na	haploid	fungi	15441179	15441079	41.000000	8	8	9	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2017-06-05	5819	5818	1	17334359
GCF_022478825.1	PRJNA835134	SAMN12794296	JAJNNR000000000.1	reference genome	326644	326644	Daldinia caldariorum	strain=CBS 122874	na	latest	Scaffold	Major	Full	2022-03-03	Dalcal1	DOE Joint Genome Institute	GCA_022478825.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/478/825/GCF_022478825.1_Dalcal1	na	na	na	haploid	fungi	35556611	35554592	46.000000	0	45	211	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-05-06	10553	10397	149	34797921
GCF_008694065.1	PRJNA625767	SAMN12777271	VYXO00000000.1	reference genome	326645	326645	Daldinia childiae	strain=JS-1345	na	latest	Scaffold	Major	Full	2019-09-25	Dalch_JS-1345	National Institute of Biological Resources	GCA_008694065.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/694/065/GCF_008694065.1_Dalch_JS-1345	na	na	na	haploid	fungi	38652569	38395488	44.000000	0	133	133	National Institute of Biological Resources	Annotation submitted by National Institute of Biological Resources	2020-04-21	9567	9567	0	na
GCF_022478715.1	PRJNA858122	SAMN12794282	JAJNNS000000000.1	reference genome	326647	326647	Daldinia decipiens	strain=CBS 113046	na	latest	Scaffold	Major	Full	2022-03-03	Daldec1	DOE Joint Genome Institute	GCA_022478715.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/478/715/GCF_022478715.1_Daldec1	na	na	na	haploid	fungi	35255283	35254407	46.000000	0	96	149	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-07-15	10881	10735	138	34797921
GCF_022578975.1	PRJNA895875	SAMN12794355	JAJLYM000000000.1	reference genome	326681	326681	Hypoxylon trugodes	strain=CBS 135444	na	latest	Scaffold	Major	Full	2022-03-03	Hyptru1	DOE Joint Genome Institute	GCA_022578975.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/578/975/GCF_022578975.1_Hyptru1	na	assembly from type material	na	haploid	fungi	39350407	39350287	45.500000	0	74	86	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-11-01	12128	11996	126	34797921
GCF_022495145.1	PRJNA835135	SAMN12794297	JAJJWZ000000000.1	reference genome	326684	326684	Xylaria bambusicola	strain=CBS 139988	na	latest	Scaffold	Major	Full	2022-02-28	Xylbam139988_1	DOE Joint Genome Institute	GCA_022495145.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/495/145/GCF_022495145.1_Xylbam139988_1	na	na	na	haploid	fungi	45705225	45702172	45.500000	0	233	377	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-05-06	12324	12119	198	34797921
GCF_022578515.1	PRJNA835138	SAMN12794444	JAJKKI000000000.1	reference genome	327061	327061	Annulohypoxylon truncatum	strain=CBS 140777	na	latest	Scaffold	Major	Full	2022-02-28	Anntru1	DOE Joint Genome Institute	GCA_022578515.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/578/515/GCF_022578515.1_Anntru1	na	na	na	haploid	fungi	38067699	38066773	46.500000	0	130	163	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-05-06	11304	11144	143	34797921
GCF_000002655.1	PRJNA14003	SAMN00115746	AAHF00000000.1	reference genome	330879	746128	Aspergillus fumigatus Af293	strain=Af293	na	latest	Chromosome	Major	Full	2005-06-10	ASM265v1	J. Craig Venter Institute	GCA_000002655.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/655/GCF_000002655.1_ASM265v1	na	na	na	haploid	fungi	29384958	28809958	50.000000	8	8	19	J. Craig Venter Institute	Annotation submitted by J. Craig Venter Institute	2025-07-14	9914	9629	228	16372009
GCF_000149645.3	PRJNA18475	SAMN02953637	AAKE00000000.3	reference genome	331117	36630	Aspergillus fischeri NRRL 181	strain=NRRL 181	na	latest	Scaffold	Minor	Full	2006-12-14	ASM14964v4	TIGR	GCA_000149645.4	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/149/645/GCF_000149645.3_ASM14964v4	na	assembly designated as neotype	na	haploid	fungi	31377515	31368615	49.500000	0	163	252	TIGR	Annotation submitted by TIGR	2025-02-22	10664	10386	252	18404212
GCF_000143535.2	PRJNA20061	SAMN02953628	na	reference genome	332648	40559	Botrytis cinerea B05.10	strain=B05.10	na	latest	Complete Genome	Major	Full	2015-02-05	ASM14353v4	Syngenta Biotechnology, Inc.	GCA_000143535.4	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/143/535/GCF_000143535.2_ASM14353v4	na	na	na	haploid	fungi	42630066	42630066	42.000000	18	18	18	Syngenta Biotechnology, Inc.	Annotation submitted by Syngenta Biotechnology, Inc.	2018-04-17	11698	11698	0	21876677;23104368;26913498
GCF_000149555.1	PRJNA245136	SAMN02953630	AAIM00000000.2	reference genome	334819	117187	Fusarium verticillioides 7600	strain=7600	na	latest	Chromosome	Major	Full	2011-07-06	ASM14955v1	Syngenta Biotechnology, Inc.	GCA_000149555.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/149/555/GCF_000149555.1_ASM14955v1	na	na	na	haploid	fungi	41791161	41700345	48.500000	11	36	210	Syngenta Biotechnology, Inc.	Annotation submitted by Syngenta Biotechnology, Inc.	2023-04-03	16290	15890	396	17823352;20237561;22178648
GCF_038362705.1	PRJNA1140273	SAMN32709951	JAQQWE000000000.1	reference genome	335848	335848	Apiospora aurea	strain=CBS 24483	na	latest	Contig	Major	Full	2024-04-22	ASM3836270v1	Aalborg university	GCA_038362705.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/038/362/705/GCF_038362705.1_ASM3836270v1	na	assembly from type material	na	haploid	fungi	49776134	49776134	52.000000	0	11	11	Aalborg university	Annotation submitted by Aalborg university	2024-07-31	15187	15187	0	na
GCF_038362585.1	PRJNA1140273	SAMN32718006	JAQQWD000000000.1	reference genome	335849	335849	Apiospora marii	strain=CBS 49790	na	latest	Contig	Major	Full	2024-04-22	ASM3836258v1	Aalborg university	GCA_038362585.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/038/362/585/GCF_038362585.1_ASM3836258v1	na	assembly from type material	na	haploid	fungi	51094086	51094086	53.000000	0	15	15	Aalborg university	Annotation submitted by Aalborg university	2024-07-31	16453	16453	0	na
GCF_000219625.1	PRJNA170847	SAMN02746078	ACPE00000000.1	reference genome	336722	1047171	Zymoseptoria tritici IPO323	strain=IPO323	na	latest	Chromosome	Major	Full	2011-07-06	MYCGR v2.0	DOE Joint Genome Institute	GCA_000219625.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/219/625/GCF_000219625.1_MYCGR_v2.0	na	assembly from type material	na	haploid	fungi	39686251	39678910	52.000000	21	21	24	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2020-02-07	10942	10941	0	21695235
GCF_000003515.1	PRJNA39807	SAMN02953631	AAIW00000000.1	reference genome	336963	33188	Uncinocarpus reesii 1704	strain=1704	na	latest	Scaffold	Major	Full	2009-05-21	ASM351v2	Broad Institute	GCA_000003515.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/003/515/GCF_000003515.1_ASM351v2	na	na	na	haploid	fungi	22327935	22146268	48.500000	0	44	582	Broad Institute	Annotation submitted by Broad Institute	2023-11-13	7855	7759	96	na
GCF_000149615.1	PRJNA17637	SAMN02953635	AAJN00000000.1	reference genome	341663	33178	Aspergillus terreus NIH2624	strain=NIH2624	na	latest	Scaffold	Major	Full	2006-09-08	ASM14961v1	Broad Institute	GCA_000149615.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/149/615/GCF_000149615.1_ASM14961v1	na	na	na	haploid	fungi	29331195	29197939	53.000000	0	26	267	Broad Institute	Annotation submitted by Broad Institute	2025-02-21	10551	10401	147	na
GCF_001662655.1	PRJNA342683	SAMN03382556	LAJO00000000.1	reference genome	342668	342668	Pseudogymnoascus verrucosus	strain=UAMH 10579	na	latest	Scaffold	Major	Full	2016-06-24	ASM166265v1	US Forest Service	GCA_001662655.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/662/655/GCF_001662655.1_ASM166265v1	na	assembly from type material	na	haploid	fungi	30174856	30160056	50.500000	0	151	313	US Forest Service	Annotation submitted by US Forest Service	2023-09-11	10799	10685	114	29295979
GCF_000002715.2	PRJNA18467	SAMN02953636	AAKD00000000.3	reference genome	344612	5057	Aspergillus clavatus NRRL 1	strain=NRRL 1	na	latest	Scaffold	Minor	Full	2006-12-14	ASM271v1	J. Craig Venter Institute	GCA_000002715.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/715/GCF_000002715.2_ASM271v1	na	assembly from type material	na	haploid	fungi	27859441	27850641	49.000000	0	143	231	J. Craig Venter Institute	Annotation submitted by J. Craig Venter Institute	2025-02-21	9375	9117	235	18404212
GCF_000835505.1	PRJNA326602	SAMN03176944	JYCB00000000.1	reference genome	348802	348802	Exophiala xenobiotica	strain=CBS 118157	na	latest	Scaffold	Major	Full	2015-02-23	Exop_xeno_CBS118157_V1	Broad Institute	GCA_000835505.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/835/505/GCF_000835505.1_Exop_xeno_CBS118157_V1	na	assembly from type material	na	haploid	fungi	31405760	31388042	51.500000	0	15	64	Broad Institute	Annotation submitted by Broad Institute	2024-01-05	12077	12019	53	na
GCF_030913505.1	PRJNA1032072	SAMN05442991	JAHMHQ000000000.1	reference genome	359342	359342	Colletotrichum phormii	strain=CBS 102054	na	latest	Contig	Major	Full	2023-08-24	Colph1	DOE Joint Genome Institute	GCA_030913505.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/913/505/GCF_030913505.1_Colph1	na	na	na	haploid	fungi	51666170	51666170	52.500000	0	71	71	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2023-10-30	15598	15209	372	na
GCF_000182925.2	PRJNA132	SAMN02953583	AABX00000000.3	reference genome	367110	5141	Neurospora crassa OR74A	strain=OR74A	na	latest	Chromosome	Major	Full	2013-10-25	NC12	Broad Institute	GCA_000182925.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/182/925/GCF_000182925.2_NC12	na	na	na	haploid	fungi	41037538	40996763	48.500000	7	20	411	Broad Institute	Annotation submitted by Broad Institute	2023-04-03	10590	9757	815	12712197
GCF_000185945.1	PRJNA62089	SAMN03081419	na	reference genome	367775	37769	Cryptococcus gattii WM276	strain=WM276	na	latest	Chromosome	Major	Full	2011-01-12	ASM18594v1	Canada's Michael Smith Genome Sciences Centre	GCA_000185945.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/185/945/GCF_000185945.1_ASM18594v1	na	na	na	haploid	fungi	18374760	18361704	48.000000	14	14	14	Canada's Michael Smith Genome Sciences Centre	Annotation submitted by Canada's Michael Smith Genome Sciences Centre	2023-04-14	6580	6565	0	21304167
GCF_022376455.1	PRJNA835133	SAMN06264366	JACBKO000000000.1	reference genome	378194	378194	Epithele typhae	strain=CBS 203.58	na	latest	Contig	Major	Full	2022-02-23	Epityp1	DOE Joint Genome Institute	GCA_022376455.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/376/455/GCF_022376455.1_Epityp1	na	na	na	haploid	fungi	56143418	56143418	59.000000	0	769	769	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-05-06	13990	13761	227	33538380
GCF_038497915.1	PRJNA1141534	SAMN39621297	JBBJBO000000000.1	reference genome	383834	383834	Lipomyces doorenjongii	strain=NRRL Y-27504	na	latest	Scaffold	Major	Full	2024-04-24	Lipodoor1	DOE Joint Genome Institute	GCA_038497915.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/038/497/915/GCF_038497915.1_Lipodoor1	na	assembly from type material	na	haploid	fungi	18877777	18876312	47.000000	0	276	301	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-07-31	7414	7319	95	38638323
GCF_000340215.1	PRJNA245146	SAMN02744058	AIHZ00000000.1	reference genome	383855	1873960	Pseudocercospora fijiensis CIRAD86	strain=CIRAD86	na	latest	Scaffold	Major	Full	2013-02-26	Mycfi2	DOE Joint Genome Institute	GCA_000340215.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/340/215/GCF_000340215.1_Mycfi2	na	na	na	haploid	fungi	74141167	73730520	45.000000	0	56	778	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2020-02-05	13125	13059	48	23236275
GCF_010094035.1	PRJNA625778	SAMN05660896	JAAEIY000000000.1	reference genome	390896	390896	Trematosphaeria pertusa	strain=CBS 122368	na	latest	Scaffold	Major	Full	2020-01-31	Trepe1	DOE Joint Genome Institute	GCA_010094035.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/094/035/GCF_010094035.1_Trepe1	na	assembly from type material	na	haploid	fungi	47745773	47061615	51.500000	0	101	812	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2020-04-27	17364	17296	62	na
GCF_001481775.2	PRJNA342687	SAMN02849381	JPDN00000000.2	reference genome	398673	398673	Trichoderma gamsii	strain=T6085	na	latest	Scaffold	Major	Full	2018-02-02	TGAM01v2	University of Pisa	GCA_001481775.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/481/775/GCF_001481775.2_TGAM01v2	na	na	na	haploid	fungi	37908251	37907810	49.000000	0	172	172	University of Pisa	Annotation submitted by University of Pisa	2018-04-04	11171	11171	0	26893428
GCF_000149845.2	PRJNA32667	SAMN02953668	AATM00000000.2	reference genome	402676	4897	Schizosaccharomyces japonicus yFS275	strain=yFS275	na	latest	Scaffold	Major	Full	2013-08-16	SJ5	Broad Institute	GCA_000149845.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/149/845/GCF_000149845.2_SJ5	na	na	na	haploid	fungi	11733154	11135996	44.000000	0	32	87	Broad Institute	Annotation submitted by Broad Institute	2017-10-11	5224	4878	337	21511999
GCF_000170995.1	PRJNA264113	SAMN02744059	ABDF00000000.2	reference genome	413071	29875	Trichoderma virens Gv29-8	strain=Gv29-8	na	latest	Scaffold	Major	Full	2011-11-29	TRIVI v2.0	DOE Joint Genome Institute	GCA_000170995.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/170/995/GCF_000170995.1_TRIVI_v2.0	na	na	na	haploid	fungi	39022666	39022654	49.000000	0	93	93	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2023-12-29	12382	12382	0	21501500
GCF_028974205.1	PRJNA973687	SAMN30185295	JAPZBM000000000.1	reference genome	416450	416450	Penicillium antarcticum	strain=IBT 31339	na	latest	Contig	Major	Full	2023-02-23	ASM2897420v1	Aalborg University	GCA_028974205.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/974/205/GCF_028974205.1_ASM2897420v1	na	na	na	haploid	fungi	30836278	30836278	49.000000	0	11	11	Aalborg University	Annotation submitted by Aalborg University	2023-07-27	11212	11212	0	36726175
GCF_000149925.1	PRJNA66375	SAMN00013043	AAWC00000000.1	reference genome	418459	5297	Puccinia graminis f. sp. tritici CRL 75-36-700-3	strain=CRL 75-36-700-3	na	latest	Scaffold	Major	Full	2008-08-26	ASM14992v1	Broad Institute	GCA_000149925.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/149/925/GCF_000149925.1_ASM14992v1	na	na	na	haploid	fungi	88644628	81521292	43.500000	0	392	4557	Broad Institute	Annotation submitted by Broad Institute	2023-11-13	16308	15799	436	na
GCF_003013735.1	PRJNA453594	SAMN08714088	PYFQ00000000.1	reference genome	418784	418784	Candidozyma pseudohaemuli	strain=B12108	na	latest	Scaffold	Major	Full	2018-03-22	Cand_pseudohaemulonii_B12108	Broad Institute of MIT and Harvard	GCA_003013735.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/013/735/GCF_003013735.1_Cand_pseudohaemulonii_B12108	na	na	na	haploid	fungi	12591275	12590698	47.000000	0	36	36	Broad Institute of MIT and Harvard	Annotation submitted by Broad Institute of MIT and Harvard	2018-04-26	5285	5134	150	30559369
GCF_024521655.1	PRJNA895877	SAMN13190035	JAJKKZ000000000.1	reference genome	419775	419775	Durotheca rogersii	strain=YMJ 92031201	na	latest	Contig	Major	Full	2022-08-04	Durrog2	DOE Joint Genome Institute	GCA_024521655.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/521/655/GCF_024521655.1_Durrog2	na	assembly from type material	na	haploid	fungi	48181149	48181149	51.500000	0	155	155	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-11-01	10623	10535	85	34797921
GCF_021436955.1	PRJNA1140289	SAMN24407916	JAJVCZ000000000.3	reference genome	420778	420778	Diplodia seriata	strain=FDS-637	na	latest	Contig	Major	Full	2024-06-24	ASM2143695v3	Agriculture and Agri-Food Canada	GCA_021436955.3	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/436/955/GCF_021436955.1_ASM2143695v3	na	na	na	haploid	fungi	37536239	37536239	56.500000	0	21	21	Agriculture and Agri-Food Canada	Annotation submitted by Agriculture and Agri-Food Canada	2024-07-31	10707	10553	154	na
GCF_000181695.2	PRJNA27973	SAMN02953680	AAYY00000000.1	reference genome	425265	76773	Malassezia globosa CBS 7966	strain=CBS 7966	na	latest	Contig	Minor	Full	2007-11-02	ASM18169v2	The Procter & Gamble Company	GCA_000181695.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/181/695/GCF_000181695.2_ASM18169v2	na	assembly from type material	na	haploid	fungi	8954998	8954998	52.000000	0	62	62	The Procter & Gamble Company	Annotation submitted by The Procter & Gamble Company	2023-12-27	4278	4278	0	18000048
GCF_000149955.1	PRJNA342688	SAMN02953675	AAXH00000000.1	na	426428	5507	Fusarium oxysporum f. sp. lycopersici 4287	strain=4287	na	latest	Chromosome	Major	Full	2015-08-20	ASM14995v2	Broad Institute	GCA_000149955.2	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/149/955/GCF_000149955.1_ASM14995v2	na	na	na	haploid	fungi	61386934	59936783	48.500000	15	114	1362	Broad Institute	Annotation submitted by Broad Institute	2023-09-15	21353	20924	420	20237561
GCF_023758075.1	PRJNA858129	SAMN18144515	JAFVLT000000000.1	reference genome	430562	430562	Alternaria novae-zelandiae	strain=BMP 2774	na	latest	Scaffold	Major	Full	2022-06-17	ASM2375807v1	Cornell University	GCA_023758075.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/758/075/GCF_023758075.1_ASM2375807v1	na	assembly from type material	na	haploid	fungi	37570309	37569731	49.500000	0	204	204	Cornell University	Annotation submitted by Cornell University	2022-07-15	11027	10919	108	na
GCF_000167675.1	PRJNA225530	SAMN02746107	AAIL00000000.2	reference genome	431241	51453	Trichoderma reesei QM6a	strain=QM6a	na	latest	Scaffold	Major	Full	2011-07-18	v2.0	DOE Joint Genome Institute	GCA_000167675.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/167/675/GCF_000167675.1_v2.0	na	assembly from type material	na	haploid	fungi	33395713	33348591	53.000000	0	77	121	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2020-02-05	9116	9109	0	18454138
GCF_000150035.1	PRJNA20539	SAMN02953681	AAZN00000000.1	reference genome	436907	36033	Vanderwaltozyma polyspora DSM 70294	strain=DSM 70294	na	latest	Scaffold	Major	Full	2007-08-17	ASM15003v1	Trinity College Dublin, Ireland	GCA_000150035.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/150/035/GCF_000150035.1_ASM15003v1	na	assembly from type material	na	haploid	fungi	14674591	14661591	33.000000	0	281	411	Trinity College Dublin, Ireland	Annotation submitted by Trinity College Dublin, Ireland	2025-07-15	5764	5325	241	17494770
GCF_000003125.1	PRJNA38857	SAMN02953686	ABAS00000000.1	reference genome	441959	28564	Talaromyces stipitatus ATCC 10500	strain=ATCC 10500	na	latest	Scaffold	Major	Full	2008-12-22	JCVI-TSTA1-3.0	J. Craig Venter Institute	GCA_000003125.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/003/125/GCF_000003125.1_JCVI-TSTA1-3.0	na	assembly from type material	na	haploid	fungi	35685443	35558430	46.000000	0	820	960	J. Craig Venter Institute	Annotation submitted by J. Craig Venter Institute	2023-11-13	12572	12455	104	25676766
GCF_018416015.2	PRJNA1128268	SAMN00004989	na	reference genome	443226	199306	Coccidioides posadasii str. Silveira	strain=Silveira	na	latest	Complete Genome	Minor	Full	2022-02-01	ASM1841601v2	Northern Arizona University	GCA_018416015.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/416/015/GCF_018416015.2_ASM1841601v2	na	na	na	haploid	fungi	28193268	28193268	46.500000	9	9	9	Northern Arizona University	Annotation submitted by Northern Arizona University	2024-09-24	8438	8299	137	na
GCF_000150115.1	PRJNA786948	SAMN02953690	ABBS00000000.2	reference genome	447093	5037	Histoplasma capsulatum G186AR	strain=G186AR	na	latest	Scaffold	Major	Full	2009-03-23	ASM15011v1	WashU	GCA_000150115.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/150/115/GCF_000150115.1_ASM15011v1	na	na	na	haploid	fungi	30438878	30238072	44.500000	0	86	355	WashU	Annotation submitted by WashU	2022-04-19	9363	9253	109	na
GCF_016906535.1	PRJNA727464	SAMN14572378	na	reference genome	456999	456999	Rhizoctonia solani	strain=AG-1 IA	XN	latest	Complete Genome	Major	Full	2021-02-18	ASM1690653v1	China Agricultural University	GCA_016906535.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/906/535/GCF_016906535.1_ASM1690653v1	na	na	na	haploid	fungi	40703773	40703773	47.500000	16	16	16	China Agricultural University	Annotation submitted by China Agricultural University	2021-08-27	12425	12301	119	na
GCF_001664045.1	PRJNA342693	SAMN00726693	AECK00000000.1	reference genome	460523	460523	Ogataea polymorpha	strain=NCYC 495 leu1.1	na	latest	Contig	Major	Full	2016-06-17	Hanpo2	JGI-PGF	GCA_001664045.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/664/045/GCF_001664045.1_Hanpo2	na	na	na	haploid	fungi	8974371	8974371	48.000000	0	7	7	JGI-PGF	Annotation submitted by JGI-PGF	2020-02-05	5233	5153	80	27535936
GCF_010093815.1	PRJNA625776	SAMN02745604	JAAEJS000000000.1	reference genome	470096	470096	Pseudovirgaria hyperparasitica	strain=CBS 121739	na	latest	Scaffold	Major	Full	2020-01-31	Psehy1	DOE Joint Genome Institute	GCA_010093815.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/093/815/GCF_010093815.1_Psehy1	na	assembly from type material	na	haploid	fungi	35440147	35168868	47.500000	0	122	543	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2020-04-21	11298	11218	75	na
GCF_011800055.1	PRJNA786947	SAMN13038012	WVTB00000000.1	reference genome	474922	474922	Colletotrichum gloeosporioides	strain=Lc1	na	latest	Scaffold	Major	Full	2020-03-31	NFU_CgLc1_1.0	Nanjing Forestry University	GCA_011800055.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/800/055/GCF_011800055.1_NFU_CgLc1_1.0	na	na	na	haploid	fungi	61904035	61761323	51.000000	0	128	128	Nanjing Forestry University	Annotation submitted by Nanjing Forestry University	2022-02-26	15667	15368	0	32202483
GCF_000150505.1	PRJNA264110	SAMN02953709	ABHY00000000.3	reference genome	483514	4899	Schizosaccharomyces octosporus yFS286	strain=yFS286	na	latest	Scaffold	Major	Full	2013-07-30	SO6	Broad Institute	GCA_000150505.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/150/505/GCF_000150505.1_SO6	na	na	na	haploid	fungi	11634473	11262981	37.500000	0	5	18	Broad Institute	Annotation submitted by Broad Institute	2023-12-29	5347	4986	361	21511999
GCF_000143565.1	PRJNA29019	SAMN02769624	ABFE00000000.1	reference genome	486041	29883	Laccaria bicolor S238N-H82	strain=S238N-H82	na	latest	Scaffold	Major	Full	2008-01-11	V1.0	Laccaria Genome Consortium	GCA_000143565.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/143/565/GCF_000143565.1_V1.0	na	na	na	haploid	fungi	64877444	58683330	47.000000	0	665	4401	Laccaria Genome Consortium	Annotation submitted by Laccaria Genome Consortium	2023-11-13	18261	18213	0	18322534
GCF_023343755.2	PRJNA858128	SAMN19014466	JAHUZD000000000.1	reference genome	497107	497107	Candida oxycetoniae	strain=CBS 10844	na	latest	Scaffold	Minor	Full	2022-05-12	ASM2334375v2	Barcelona Supercomputing Center	GCA_023343755.2	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/343/755/GCF_023343755.2_ASM2334375v2	na	assembly from type material	na	haploid	fungi	12748657	12746247	38.000000	0	102	102	Barcelona Supercomputing Center	Annotation submitted by Barcelona Supercomputing Center	2023-12-18	4944	4896	26	35438177
GCF_024610255.1	PRJNA895879	SAMN19014846	JAIHNF000000000.1	reference genome	497108	497108	Candida jiufengensis	strain=CBS 10846	na	latest	Scaffold	Major	Full	2022-08-10	ASM2461025v1	Barcelona Supercomputing Center	GCA_024610255.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/610/255/GCF_024610255.1_ASM2461025v1	na	assembly from type material	na	haploid	fungi	13666317	13665735	27.000000	0	20	20	Barcelona Supercomputing Center	Annotation submitted by Barcelona Supercomputing Center	2022-11-03	5705	5671	26	21266473;35438177
GCF_024610245.1	PRJNA895878	SAMN19012335	JAIHNE000000000.1	reference genome	497109	497109	Candida pseudojiufengensis	strain=CBS 10847	na	latest	Scaffold	Major	Full	2022-08-10	ASM2461024v1	Barcelona Supercomputing Center	GCA_024610245.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/610/245/GCF_024610245.1_ASM2461024v1	na	assembly from type material	na	haploid	fungi	13993769	13993313	28.000000	0	54	54	Barcelona Supercomputing Center	Annotation submitted by Barcelona Supercomputing Center	2022-11-03	5846	5808	26	35438177
GCF_003013715.1	PRJNA535510	SAMN05379608	na	reference genome	498019	498019	Candidozyma auris	strain=B11220	na	latest	Complete Genome	Major	Full	2019-09-10	ASM301371v2	Centers for Disease Control and Prevention	GCA_003013715.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/013/715/GCF_003013715.1_ASM301371v2	na	assembly from type material	na	haploid	fungi	12249773	12249773	45.500000	7	7	7	Centers for Disease Control and Prevention	Annotation submitted by Centers for Disease Control and Prevention	2024-12-03	5494	5327	163	30559369
GCF_000150675.1	PRJNA225532	SAMN02953716	ABJE00000000.1	reference genome	498257	27337	Verticillium dahliae VdLs.17	strain=VdLs.17	na	latest	Scaffold	Major	Full	2011-09-15	ASM15067v2	Broad Institute	GCA_000150675.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/150/675/GCF_000150675.1_ASM15067v2	na	na	na	haploid	fungi	33828453	32903115	56.000000	8	52	1562	Broad Institute	Annotation submitted by Broad Institute	2020-01-30	10811	10535	274	na
GCF_013426205.1	PRJNA1128270	SAMN15394350	na	reference genome	500148	500148	Metarhizium brunneum	strain=4556	na	latest	Complete Genome	Major	Full	2020-07-20	ASM1342620v1	Swansea University	GCA_013426205.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/426/205/GCF_013426205.1_ASM1342620v1	na	na	na	haploid	fungi	37771916	37771916	50.500000	7	7	7	Swansea University	Annotation submitted by Swansea University	2024-06-26	11555	11405	150	na
GCF_000150705.2	PRJNA48325	SAMN02953719	ABKH00000000.2	reference genome	502779	1048829	Paracoccidioides lutzii Pb01	strain=Pb01	na	latest	Scaffold	Major	Full	2014-11-03	Paracocci_br_Pb01_V2	Broad Institute	GCA_000150705.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/150/705/GCF_000150705.2_Paracocci_br_Pb01_V2	na	assembly from type material	na	haploid	fungi	32925248	32625232	43.000000	0	110	672	Broad Institute	Annotation submitted by Broad Institute	2017-10-11	8953	8826	124	22046142
GCF_000150735.1	PRJNA264517	SAMN02953720	ABKI00000000.2	reference genome	502780	121759	Paracoccidioides brasiliensis Pb18	strain=Pb18	na	latest	Scaffold	Major	Full	2014-10-24	Paracocci_br_Pb18_V2	Broad Institute	GCA_000150735.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/150/735/GCF_000150735.1_Paracocci_br_Pb18_V2	na	na	na	haploid	fungi	29952540	29468725	44.500000	0	57	556	Broad Institute	Annotation submitted by Broad Institute	2022-04-18	8522	8390	131	22046142
GCF_000184455.2	PRJNA28175	SAMD00067075	na	reference genome	510516	5062	Aspergillus oryzae RIB40	strain=RIB40	na	latest	Chromosome	Major	Full	2011-06-24	ASM18445v3	National Institute of Technology and Evaluation (NITE), Japan	GCA_000184455.3	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/184/455/GCF_000184455.2_ASM18445v3	na	na	na	haploid	fungi	37882812	37088482	48.500000	8	11	27	National Institute of Technology and Evaluation (NITE), Japan	Annotation submitted by National Institute of Technology and Evaluation (NITE), Japan	2025-02-21	12347	12074	270	16372010
GCF_000213175.1	PRJNA264105	SAMN02769628	AFBT00000000.1	reference genome	510951	40127	Neurospora tetrasperma FGSC 2508	strain=FGSC 2508	na	latest	Scaffold	Major	Full	2011-06-21	v2.0	US DOE Joint Genome Institute (JGI-PGF)	GCA_000213175.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/213/175/GCF_000213175.1_v2.0	na	na	na	haploid	fungi	39146333	38490894	49.500000	0	81	551	US DOE Joint Genome Institute (JGI-PGF)	Annotation submitted by US DOE Joint Genome Institute (JGI-PGF)	2023-12-29	10379	10379	0	21750257
GCF_000226545.1	PRJNA29799	na	na	reference genome	515849	2587412	Podospora anserina S mat+	strain=S mat+	na	latest	Scaffold	Major	Full	2008-05-14	ASM22654v1	Genoscope - Centre National de Séquençage	GCA_000226545.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/226/545/GCF_000226545.1_ASM22654v1	na	na	na	haploid	fungi	34718894	34250768	52.000000	7	33	33	Genoscope - Centre National de Séquençage	Annotation submitted by Genoscope - Centre National de Séquençage	2018-04-11	10527	10518	0	na
GCF_000150825.1	PRJNA51263	SAMN02953725	ABPE00000000.1	reference genome	526221	1051613	Verticillium alfalfae VaMs.102	strain=VaMs.102	na	latest	Scaffold	Major	Full	2008-06-16	ASM15082v1	Broad Institute	GCA_000150825.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/150/825/GCF_000150825.1_ASM15082v1	na	na	na	haploid	fungi	32833495	30299901	56.000000	0	26	4147	Broad Institute	Annotation submitted by Broad Institute	2017-07-12	10488	10237	245	na
GCF_000150975.2	PRJNA61175	SAMN02953728	ABQE00000000.1	reference genome	535722	63402	Nannizzia gypsea CBS 118893	strain=CBS 118893	na	latest	Scaffold	Minor	Full	2015-07-16	MS_CBS118893	Broad Institute	GCA_000150975.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/150/975/GCF_000150975.2_MS_CBS118893	na	na	na	haploid	fungi	23249403	23092619	48.500000	0	18	317	Broad Institute	Annotation submitted by Broad Institute	2017-10-10	9029	8921	108	na
GCF_000151145.1	PRJNA49289	SAMN02953735	ABVF00000000.1	reference genome	554155	63405	Microsporum canis CBS 113480	strain=CBS 113480	na	latest	Scaffold	Major	Full	2008-10-22	ASM15114v1	Broad Institute	GCA_000151145.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/151/145/GCF_000151145.1_ASM15114v1	na	na	na	haploid	fungi	23241642	23116036	47.500000	0	16	309	Broad Institute	Annotation submitted by Broad Institute	2019-11-27	8847	8765	81	na
GCF_000146045.2	PRJNA128	na	na	reference genome	559292	4932	Saccharomyces cerevisiae S288C	strain=S288C	na	latest	Complete Genome	Major	Full	2014-12-17	R64	Saccharomyces Genome Database	GCA_000146045.2	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/146/045/GCF_000146045.2_R64	na	na	na	haploid	fungi	12071326	12071326	38.500000	16	16	16	SGD	SGD R64-5-1	2025-06-30	6477	6021	438	1574125;7670463;7731988;7813418;8091229;8196765;8641269;8849441;9169867;9169868;9169869;9169870;9169871;9169872;9169873;9169874;9169875;9872396;34897464
GCF_000142805.1	PRJNA39575	SAMEA3138300	na	reference genome	559295	381046	Lachancea thermotolerans CBS 6340	strain=CBS 6340	na	latest	Chromosome	Major	Full	2009-06-05	ASM14280v1	Génolevures Consortium	GCA_000142805.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/142/805/GCF_000142805.1_ASM14280v1	na	assembly from type material	na	haploid	fungi	10392862	10390139	47.500000	8	8	8	Génolevures Consortium	Annotation submitted by Génolevures Consortium	2025-07-15	5384	5092	292	19525356
GCF_000003525.1	PRJNA319322	SAMN02953741	ACBT00000000.1	reference genome	559297	5039	Blastomyces dermatitidis ER-3	strain=ER-3	na	latest	Scaffold	Major	Full	2009-02-24	BD_ER3_V1	Broad Institute	GCA_000003525.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/003/525/GCF_000003525.1_BD_ER3_V1	na	na	na	haploid	fungi	66568269	66230255	37.000000	0	25	591	Broad Institute	Annotation submitted by Broad Institute	2022-04-19	10080	9754	132	na
GCF_000003855.2	PRJNA41099	SAMN02953742	ACBU00000000.1	reference genome	559298	1681229	Blastomyces gilchristii SLH14081	strain=SLH14081	na	latest	Scaffold	Minor	Full	2009-02-24	BD_SLH14081_V1	Broad Institute	GCA_000003855.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/003/855/GCF_000003855.2_BD_SLH14081_V1	na	na	na	haploid	fungi	75353942	74342981	36.000000	0	100	1791	Broad Institute	Annotation submitted by Broad Institute	2019-11-27	10148	9692	150	na
GCF_000151425.1	PRJNA65025	SAMN02953760	ACPH00000000.1	reference genome	559305	5551	Trichophyton rubrum CBS 118892	strain=CBS 118892	na	latest	Scaffold	Major	Full	2009-11-30	ASM15142v1	Broad Institute	GCA_000151425.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/151/425/GCF_000151425.1_ASM15142v1	na	na	na	haploid	fungi	22502330	22100498	48.500000	0	35	622	Broad Institute	Annotation submitted by Broad Institute	2022-04-18	8713	8616	96	na
GCF_014066315.1	PRJNA670757	SAMN14933604	JACCJB000000000.1	reference genome	560253	560253	Letharia lupina	na	WasteWater1	latest	Contig	Major	Full	2020-08-06	Lelup_v1.1	Eastern Washington University	GCA_014066315.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/066/315/GCF_014066315.1_Lelup_v1.1	na	na	na	haploid	fungi	49166941	49166941	39.000000	0	30	30	Eastern Washington University	Annotation submitted by Eastern Washington University	2020-11-09	11073	11013	60	32504651
GCF_019202705.1	PRJNA858120	SAMN18558097	JAGSYN000000000.1	reference genome	561895	561895	[Candida] subhashii	strain=CBS 10753	na	latest	Scaffold	Major	Full	2021-07-13	ASM1920270v1	Barcelona Supercomputing Center	GCA_019202705.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/202/705/GCF_019202705.1_ASM1920270v1	na	assembly from type material	na	haploid	fungi	15377153	15372724	34.500000	0	332	332	Barcelona Supercomputing Center	Annotation submitted by Barcelona Supercomputing Center	2022-07-15	6204	6146	26	20395267;34129020
GCF_000732125.1	PRJNA319335	SAMN02727168	JOWA00000000.1	reference genome	563466	563466	Scedosporium apiospermum	strain=IHEM 14462	na	latest	Scaffold	Major	Full	2014-07-21	ScApio1.0	LUNAM - Angers University	GCA_000732125.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/732/125/GCF_000732125.1_ScApio1.0	na	na	na	haploid	fungi	43437139	43202145	50.500000	0	176	176	LUNAM - Angers University	Annotation submitted by LUNAM - Angers University	2023-09-11	10920	8376	0	25278533
GCF_035658355.1	PRJNA1073834	SAMN16387706	na	reference genome	564305	564305	Kwoniella shivajii	na	CBS 11374	latest	Complete Genome	Major	Full	2024-01-15	ASM3565835v1	Broad Institute	GCA_035658355.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/035/658/355/GCF_035658355.1_ASM3565835v1	na	assembly from type material	na	haploid	fungi	22171496	22171496	43.500000	12	12	12	Broad Institute	Annotation submitted by Broad Institute	2024-02-07	7975	7879	50	na
GCF_023758015.1	PRJNA858129	SAMN18144514	JAFVLU000000000.1	reference genome	566460	566460	Alternaria viburni	strain=BMP 2772	na	latest	Scaffold	Major	Full	2022-06-17	ASM2375801v1	Cornell University	GCA_023758015.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/758/015/GCF_023758015.1_ASM2375801v1	na	assembly from type material	na	haploid	fungi	36351886	36351767	50.500000	0	188	188	Cornell University	Annotation submitted by Cornell University	2022-07-15	11856	11747	109	na
GCF_000835495.1	PRJNA326656	SAMN03176946	JYBZ00000000.1	reference genome	569365	569365	Cladophialophora immunda	strain=CBS 83496	na	latest	Scaffold	Major	Full	2015-02-23	Clad_immu_CBS83496_V1	Broad Institute	GCA_000835495.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/835/495/GCF_000835495.1_Clad_immu_CBS83496_V1	na	assembly from type material	na	haploid	fungi	43029152	42968387	53.000000	0	277	363	Broad Institute	Annotation submitted by Broad Institute	2024-01-05	12879	12830	45	na
GCF_000226095.1	PRJNA79339	SAMN00739435	na	reference genome	573729	78579	Thermothelomyces thermophilus ATCC 42464	strain=ATCC 42464	na	latest	Complete Genome	Major	Full	2011-09-16	ASM22609v1	DOE Joint Genome Institute	GCA_000226095.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/226/095/GCF_000226095.1_ASM22609v1	na	na	na	haploid	fungi	38744216	38744216	51.500000	7	7	7	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2020-09-19	9292	9097	192	21964414
GCF_000026945.1	PRJNA38659	SAMEA2272258	na	reference genome	573826	42374	Candida dubliniensis CD36	strain=CD36	na	latest	Complete Genome	Major	Full	2009-02-16	ASM2694v1	Wellcome Trust Sanger Institute	GCA_000026945.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/026/945/GCF_000026945.1_ASM2694v1	na	assembly from type material	na	haploid	fungi	14618422	14618422	33.000000	8	8	8	Wellcome Trust Sanger Institute	Annotation submitted by Wellcome Trust Sanger Institute	2017-08-28	6093	5859	112	19745113
GCF_035927965.1	PRJNA1105960	SAMN23564083	JAVRRS000000000.1	reference genome	574656	574656	Recurvomyces mirabilis	strain=CCFEE 5264	na	latest	Scaffold	Major	Full	2024-01-22	ASM3592796v1	Shed LighT in the daRk lineagES of the Fungal tree of life (STRES)	GCA_035927965.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/035/927/965/GCF_035927965.1_ASM3592796v1	na	assembly from type material	na	haploid	fungi	27128294	27126709	53.000000	0	541	541	Shed LighT in the daRk lineagES of the Fungal tree of life (STRES)	Annotation submitted by Shed LighT in the daRk lineagES of the Fungal tree of life (STRES)	2024-05-01	10983	10917	66	na
GCF_010093595.1	PRJNA625774	SAMN05446164	JAAEJJ000000000.1	reference genome	574789	574789	Mytilinidion resinicola	strain=CBS 304.34	na	latest	Scaffold	Major	Full	2020-01-31	Mytre1	DOE Joint Genome Institute	GCA_010093595.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/093/595/GCF_010093595.1_Mytre1	na	assembly from type material	na	haploid	fungi	47275052	46750081	50.500000	0	73	577	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2020-04-21	16878	16792	77	na
GCF_000226115.1	PRJNA79337	SAMN02744067	na	reference genome	578455	2587410	Thermothielavioides terrestris NRRL 8126	strain=NRRL 8126	na	latest	Complete Genome	Major	Full	2011-09-16	ASM22611v1	DOE Joint Genome Institute	GCA_000226115.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/226/115/GCF_000226115.1_ASM22611v1	na	na	na	haploid	fungi	36912256	36912256	54.500000	6	6	6	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2019-11-29	9958	9802	152	21964414
GCF_000271645.1	PRJNA225529	SAMN02744056	AFVY00000000.1	reference genome	578456	5217	Tremella mesenterica DSM 1558	strain=Fries	na	latest	Scaffold	Major	Full	2012-06-22	Treme1	DOE Joint Genome Institute	GCA_000271645.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/271/645/GCF_000271645.1_Treme1	na	na	na	haploid	fungi	28639919	27987508	46.500000	0	45	484	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2020-02-05	8292	8291	0	22745431
GCF_000218685.1	PRJNA225516	SAMN02744068	AEQB00000000.1	reference genome	578457	85982	Serpula lacrymans var. lacrymans S7.9	strain=S7.9	na	latest	Scaffold	Major	Full	2011-06-17	v1.0	US DOE Joint Genome Institute (JGI-PGF)	GCA_000218685.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/218/685/GCF_000218685.1_v1.0	na	na	na	haploid	fungi	42797233	42400076	45.500000	0	46	434	US DOE Joint Genome Institute (JGI-PGF)	Annotation submitted by US DOE Joint Genome Institute (JGI-PGF)	2023-12-29	12908	12905	0	21764756
GCF_000143185.2	PRJNA51487	SAMN02194201	ADMJ00000000.2	reference genome	578458	5334	Schizophyllum commune H4-8	strain=H4-8	na	latest	Scaffold	Major	Full	2022-05-17	Schco3	US DOE Joint Genome Institute (JGI-PGF)	GCA_000143185.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/143/185/GCF_000143185.2_Schco3	na	na	na	haploid	fungi	38670379	38611179	57.500000	0	25	72	US DOE Joint Genome Institute (JGI-PGF)	Annotation submitted by US DOE Joint Genome Institute (JGI-PGF)	2022-08-29	16467	16187	279	20622885
GCF_001329695.1	PRJNA342700	SAMN00138171	JTAO00000000.1	reference genome	578459	29898	Rhodotorula graminis WP1	strain=WP1	na	latest	Scaffold	Major	Full	2015-10-19	Rhoba1_1	DOE Joint Genome Institute	GCA_001329695.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/329/695/GCF_001329695.1_Rhoba1_1	na	na	na	haploid	fungi	21013998	20777263	68.000000	0	26	322	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2020-02-05	7376	7222	151	26441909
GCF_026210795.1	PRJNA1128271	SAMN31081226	na	reference genome	588596	588596	Rhizophagus irregularis	na	DAOM-197198	latest	Chromosome	Major	Full	2022-11-16	ASM2621079v1	Royal Botanic Gardens Kew	GCA_026210795.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/210/795/GCF_026210795.1_ASM2621079v1	na	na	na	haploid	fungi	146773001	146771001	28.000000	32	32	32	Royal Botanic Gardens Kew	Annotation submitted by Royal Botanic Gardens Kew	2024-06-26	30147	30147	0	na
GCF_033458365.1	PRJNA1072703	SAMN06296510	JAULSX000000000.1	reference genome	588809	588809	Neurospora hispaniola	strain=FGSC 10403	na	latest	Contig	Major	Full	2023-11-09	Neuhi1	DOE Joint Genome Institute	GCA_033458365.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/033/458/365/GCF_033458365.1_Neuhi1	na	na	na	haploid	fungi	40807401	40807401	48.000000	0	23	23	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-02-06	10876	10446	394	37820761
GCF_042370955.1	PRJNA1216021	SAMN00750648	JBBPEK000000000.1	reference genome	591952	398408	Sodiomyces alcalophilus JCM 7366	strain=JCM 7366	na	latest	Scaffold	Major	Full	2024-09-19	Acral2	DOE Joint Genome Institute	GCA_042370955.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/042/370/955/GCF_042370955.1_Acral2	na	assembly from type material	na	haploid	fungi	54417234	54287788	46.500000	0	13	293	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-01-31	9740	9437	254	39266695
GCF_038021145.1	PRJNA1140291	SAMN16773552	JBBPHT000000000.1	reference genome	595635	595635	Phyllosticta citriasiana	strain=CBS 120426	na	latest	Contig	Major	Full	2024-04-08	Pcitr2	DOE Joint Genome Institute	GCA_038021145.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/038/021/145/GCF_038021145.1_Pcitr2	na	na	na	haploid	fungi	33767235	33767235	52.000000	0	30	30	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-07-31	10418	10290	123	na
GCF_000300555.1	PRJNA242539	SAMN00188834	AEOL00000000.1	na	597362	5341	Agaricus bisporus var. burnettii JB137-S8	strain=JB137-s8	na	latest	Scaffold	Major	Full	2012-10-16	Agabi_varbur_1	JGI	GCA_000300555.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/300/555/GCF_000300555.1_Agabi_varbur_1	na	na	na	haploid	fungi	32614392	31234014	46.500000	0	2016	2526	JGI	Annotation submitted by JGI	2024-01-02	11443	11255	184	23045686
GCF_000313525.1	PRJNA244785	SAMEA2272653	CAGC00000000.1	reference genome	599839	599839	Fibroporia radiculosa	strain=TFFH 294	na	latest	Scaffold	Major	Full	2012-03-30	ASM31352v1	Forest Products, Mississippi State University	GCA_000313525.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/313/525/GCF_000313525.1_ASM31352v1	na	na	na	haploid	fungi	28378039	28216918	51.000000	0	861	1823	NCBI RefSeq	Annotation submitted by NCBI RefSeq	2015-04-16	9184	9184	0	na
GCF_000223485.1	PRJNA225527	SAMN00714472	AEIK00000000.1	reference genome	619300	340170	Spathaspora passalidarum NRRL Y-27907	strain=NRRL Y-27907	na	latest	Scaffold	Major	Full	2011-08-25	Spathaspora passalidarum v2.0	DOE Joint Genome Institute	GCA_000223485.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/223/485/GCF_000223485.1_Spathaspora_passalidarum_v2.0	na	assembly from type material	na	haploid	fungi	13182099	13079731	37.500000	0	8	26	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2023-12-29	5978	5978	0	21788494
GCF_000027005.1	PRJNA39439	SAMEA2272385	na	reference genome	644223	460519	Komagataella phaffii GS115	strain=GS115	na	latest	Chromosome	Major	Full	2009-05-25	ASM2700v1	Unit for Molecular Glycobiology, Department for Molecular Biomedical Research, VIB, UGent, Belgium	GCA_000027005.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/027/005/GCF_000027005.1_ASM2700v1	na	na	na	haploid	fungi	9216378	9215851	41.000000	4	4	4	Unit for Molecular Glycobiology, Department for Molecular Biomedical Research, VIB, UGent, Belgium	Annotation submitted by Unit for Molecular Glycobiology, Department for Molecular Biomedical Research, VIB, UGent, Belgium	2023-02-17	5040	5040	0	19465926
GCF_000145635.1	PRJNA225513	SAMN02981249	ADBI00000000.1	reference genome	644352	36779	Gaeumannomyces tritici R3-111a-1	strain=R3-111a-1	na	latest	Scaffold	Major	Full	2010-08-25	Gae_graminis_V2	Broad Institute	GCA_000145635.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/145/635/GCF_000145635.1_Gae_graminis_V2	na	na	na	haploid	fungi	43618147	40880106	57.000000	0	513	1808	Broad Institute	Annotation submitted by Broad Institute	2017-07-12	14749	14458	211	na
GCF_000149035.1	PRJNA225514	SAMN02953757	ACOD00000000.1	reference genome	645133	31870	Colletotrichum graminicola M1.001	strain=M1.001	na	latest	Scaffold	Major	Full	2010-10-12	C_graminicola_M1_001_V1	Broad Institute	GCA_000149035.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/149/035/GCF_000149035.1_C_graminicola_M1_001_V1	na	assembly from type material	na	haploid	fungi	51604658	50866947	49.000000	0	653	1151	Broad Institute	Annotation submitted by Broad Institute	2022-02-25	12399	12019	379	na
GCF_000182565.1	PRJNA319336	SAMN00716787	ACOE00000000.1	reference genome	645134	109760	Spizellomyces punctatus DAOM BR117	strain=DAOM BR117	na	latest	Scaffold	Major	Full	2015-07-29	S_punctatus_V1	Broad Institute	GCA_000182565.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/182/565/GCF_000182565.1_S_punctatus_V1	na	na	na	haploid	fungi	24131112	23906001	47.500000	0	38	329	Broad Institute	Annotation submitted by Broad Institute	2022-04-18	9169	8950	214	na
GCF_000300595.1	PRJNA242544	SAMN02981278	AEHB00000000.1	reference genome	650164	231932	Phanerochaete carnosa HHB-10118-sp	strain=HHB-10118-sp	na	latest	Scaffold	Major	Full	2012-10-16	Phanerochaete carnosa HHB-10118-Sp v1.0	DOE Joint Genome Institute	GCA_000300595.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/300/595/GCF_000300595.1_Phanerochaete_carnosa_HHB-10118-Sp_v1.0	na	na	na	haploid	fungi	46293325	43133388	53.000000	0	1137	2598	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2020-02-05	14080	13918	138	22937793
GCF_000004155.1	PRJNA264109	SAMN02953762	ACQJ00000000.2	reference genome	653667	866546	Schizosaccharomyces cryophilus OY26	strain=OY26	na	latest	Scaffold	Major	Full	2013-07-31	SCY4	Broad Institute	GCA_000004155.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/004/155/GCF_000004155.1_SCY4	na	assembly from type material	na	haploid	fungi	11554764	11523874	37.500000	0	30	198	Broad Institute	Annotation submitted by Broad Institute	2023-12-29	5494	5155	338	21511999
GCF_000280675.1	PRJNA225503	SAMN02981247	ADAH00000000.1	reference genome	655819	176275	Beauveria bassiana ARSEF 2860	strain=ARSEF 2860	na	latest	Scaffold	Major	Full	2012-08-14	ASM28067v1	Zhejiang University, China	GCA_000280675.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/280/675/GCF_000280675.1_ASM28067v1	na	na	na	haploid	fungi	33693936	33594836	51.500000	0	235	1226	Zhejiang University, China	Annotation submitted by Zhejiang University, China	2024-01-02	10364	10364	0	22761991
GCF_000187425.2	PRJNA245140	SAMN02981260	ADNJ00000000.2	reference genome	655844	568076	Metarhizium robertsii ARSEF 23	strain=ARSEF 23	na	latest	Scaffold	Major	Full	2014-12-19	MAA 2.0	Metarhizium genome sequencing Consortium	GCA_000187425.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/187/425/GCF_000187425.2_MAA_2.0	na	na	na	haploid	fungi	41656800	38960102	51.500000	0	90	90	Metarhizium genome sequencing Consortium	Annotation submitted by Metarhizium genome sequencing Consortium	2023-12-29	11688	11688	0	21253567;25368161
GCF_000143105.1	PRJNA264104	SAMN02953765	ACXQ00000000.2	reference genome	655863	226899	Grosmannia clavigera kw1407	strain=kw1407	na	latest	Scaffold	Major	Full	2011-01-31	Sanger-454-IlluminaPA_2.0	Michael Smith Laboratories at UBC	GCA_000143105.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/143/105/GCF_000143105.1_Sanger-454-IlluminaPA_2.0	na	na	na	haploid	fungi	29794006	29128709	53.500000	0	289	333	Michael Smith Laboratories at UBC	Annotation submitted by Michael Smith Laboratories at UBC	2023-12-29	8311	8311	0	21262841
GCF_001641265.1	PRJNA342683	SAMN03382554	LAJJ00000000.1	reference genome	655981	655981	Pseudogymnoascus destructans	strain=20631-21	na	latest	Scaffold	Major	Full	2016-05-10	ASM164126v1	US Forest Service	GCA_001641265.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/641/265/GCF_001641265.1_ASM164126v1	na	assembly from type material	na	haploid	fungi	35818201	35810421	49.000000	0	83	86	US Forest Service	Annotation submitted by US Forest Service	2023-12-29	9620	9405	215	na
GCF_013085055.1	PRJNA950323	SAMN14572364	na	reference genome	660027	5507	Fusarium oxysporum Fo47	strain=Fo47	na	latest	Complete Genome	Major	Full	2020-05-13	ASM1308505v1	Xi'an Jiaotong University	GCA_013085055.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/085/055/GCF_013085055.1_ASM1308505v1	na	na	na	haploid	fungi	50358849	50358849	47.500000	12	12	12	Xi'an Jiaotong University	Annotation submitted by Xi'an Jiaotong University	2023-09-15	16502	16202	295	32552518
GCF_000151355.1	PRJNA51499	SAMN02746079	ACJF00000000.1	reference genome	660122	2747968	Fusarium vanettenii 77-13-4	na	77-13-4	latest	Scaffold	Major	Full	2009-08-27	v2.0	DOE Joint Genome Institute	GCA_000151355.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/151/355/GCF_000151355.1_v2.0	na	na	na	haploid	fungi	51286497	51230363	51.000000	17	209	233	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2020-08-07	15708	15708	0	19714214
GCF_011745365.1	PRJNA722003	SAMN02744051	WHUS00000000.1	reference genome	660469	5116	Cryphonectria parasitica EP155	strain=EP155	na	latest	Scaffold	Major	Full	2020-03-25	Crypa2	DOE Joint Genome Institute	GCA_011745365.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/745/365/GCF_011745365.1_Crypa2	na	na	na	haploid	fungi	43870411	43800411	51.000000	0	26	33	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2021-04-20	11709	11588	119	32207662
GCF_000151505.1	PRJNA51485	SAMN02953766	ACYE00000000.1	reference genome	663202	63417	Trichophyton verrucosum HKI 0517	strain=HKI 0517	na	latest	Scaffold	Major	Full	2010-03-17	ASM15150v1	NCBI	GCA_000151505.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/151/505/GCF_000151505.1_ASM15150v1	na	na	na	haploid	fungi	22540967	22539417	48.000000	0	523	523	NCBI RefSeq	Annotation submitted by NCBI RefSeq	2012-09-13	8075	8017	41	na
GCF_000151125.1	PRJNA51431	SAMN02953733	ABSU00000000.1	reference genome	663331	63400	Trichophyton benhamiae CBS 112371	strain=CBS 112371	na	latest	Contig	Major	Full	2010-03-17	ASM15112v2	Arthroderma Genome Sequencing Consortium	GCA_000151125.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/151/125/GCF_000151125.1_ASM15112v2	na	na	na	haploid	fungi	22224160	22224160	48.500000	0	68	68	Arthroderma Genome Sequencing Consortium	Annotation submitted by Arthroderma Genome Sequencing Consortium	2023-12-29	8031	7973	39	na
GCF_000146945.2	PRJNA20263	SAMN02953621	AAGT00000000.1	reference genome	665079	5180	Sclerotinia sclerotiorum 1980 UF-70	strain=1980	na	latest	Scaffold	Minor	Full	2015-07-16	ASM14694v2	Broad Institute	GCA_000146945.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/146/945/GCF_000146945.2_ASM14694v2	na	na	na	haploid	fungi	38330312	38001451	42.000000	0	36	679	Broad Institute	Annotation submitted by Broad Institute	2023-04-03	14714	14490	220	na
GCF_000338995.1	PRJNA245122	SAMN02981285	AEIN00000000.1	reference genome	665912	45130	Bipolaris sorokiniana ND90Pr	strain=ND90Pr	na	latest	Scaffold	Major	Full	2013-02-19	Cocsa1	JGI	GCA_000338995.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/338/995/GCF_000338995.1_Cocsa1	na	na	na	haploid	fungi	34409167	33212626	50.000000	0	154	503	JGI	Annotation submitted by JGI	2020-02-06	12304	12210	92	23236275
GCF_000344685.1	PRJNA245137	SAMN02743873	AFVP00000000.1	reference genome	670483	104355	Gloeophyllum trabeum ATCC 11539	strain=ATCC 11539	na	latest	Scaffold	Major	Full	2013-03-21	Glotr1_1	JGI	GCA_000344685.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/344/685/GCF_000344685.1_Glotr1_1	na	na	na	haploid	fungi	37178225	34429137	53.000000	0	442	1454	JGI	Annotation submitted by JGI	2024-01-02	11883	11753	123	22745431
GCF_002117355.1	PRJNA445945	SAMN02193972	NEDQ00000000.1	reference genome	670580	104341	Postia placenta MAD-698-R-SB12	strain=MAD-698-R-SB12	na	latest	Scaffold	Major	Full	2017-05-03	PosplRSB12_1	DOE Joint Genome Institute	GCA_002117355.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/117/355/GCF_002117355.1_PosplRSB12_1	na	na	na	haploid	fungi	42452888	39840202	54.000000	0	549	1614	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2018-03-31	12716	12537	163	na
GCF_000263375.1	PRJNA225533	SAMN02769629	AFQX00000000.1	reference genome	671144	1708541	Wallemia mellicola CBS 633.66	strain=CBS 633.66	na	latest	Scaffold	Major	Full	2012-05-29	Wallemia sebi v1.0	JGI	GCA_000263375.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/263/375/GCF_000263375.1_Wallemia_sebi_v1.0	na	assembly from type material	na	haploid	fungi	9815586	9798416	40.000000	0	56	106	JGI	Annotation submitted by JGI	2017-07-12	5395	5277	116	22326418
GCF_000359705.1	PRJNA245152	SAMN00120049	AIHT00000000.1	reference genome	671987	93612	Exserohilum turcica Et28A	strain=Et28A	na	latest	Scaffold	Major	Full	2013-04-25	Setospaeria trucica Et28A v1.0	JGI	GCA_000359705.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/359/705/GCF_000359705.1_Setospaeria_trucica_Et28A_v1.0	na	na	na	haploid	fungi	43013545	38252428	51.500000	0	407	2126	JGI	Annotation submitted by JGI	2020-02-07	11835	11687	146	23236275;23357949
GCF_010093535.1	PRJNA625772	SAMN05446602	JAAEJD000000000.1	reference genome	673940	673940	Lindgomyces ingoldianus	strain=ATCC 200398	na	latest	Scaffold	Major	Full	2020-01-31	Linin1	DOE Joint Genome Institute	GCA_010093535.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/093/535/GCF_010093535.1_Linin1	na	assembly from type material	na	haploid	fungi	69030646	68103745	42.000000	0	200	1522	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2020-04-21	16000	15946	45	na
GCF_030913465.1	PRJNA1032070	SAMN05660908	JAHLJV000000000.1	reference genome	681940	681940	Colletotrichum navitas	strain=CBS 125086	na	latest	Contig	Major	Full	2023-08-24	Colna1	DOE Joint Genome Institute	GCA_030913465.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/913/465/GCF_030913465.1_Colna1	na	assembly from type material	na	haploid	fungi	52434554	52434554	48.500000	0	702	702	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2023-10-30	14963	14678	281	na
GCF_001661255.1	PRJNA352844	SAMN00138384	LWUN00000000.1	reference genome	683960	4927	Wickerhamomyces anomalus NRRL Y-366-8	strain=NRRL Y-366-8	na	latest	Scaffold	Major	Full	2016-09-09	Wican1	JGI-PSF	GCA_001661255.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/661/255/GCF_001661255.1_Wican1	na	na	na	haploid	fungi	14145566	13720216	34.500000	0	46	222	JGI-PSF	Annotation submitted by JGI-PSF	2025-07-15	6571	6417	154	27535936
GCF_000203795.2	PRJNA225502	SAMN02746048	ADAR00000000.1	reference genome	684364	109871	Batrachochytrium dendrobatidis JAM81	strain=JAM81	na	latest	Scaffold	Minor	Full	2011-04-12	v1.1	US DOE Joint Genome Institute (JGI-PGF)	GCA_000203795.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/203/795/GCF_000203795.2_v1.1	na	na	na	haploid	fungi	23810896	23632276	39.500000	0	62	425	US DOE Joint Genome Institute (JGI-PGF)	Annotation submitted by US DOE Joint Genome Institute (JGI-PGF)	2024-01-18	8386	8386	0	na
GCF_029851405.1	PRJNA999184	SAMN32099705	JARTCD000000000.1	reference genome	688661	688661	Lichtheimia ornata	na	CBS 291.66	latest	Scaffold	Major	Full	2023-04-20	ASM2985140v1	Broad Institute	GCA_029851405.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/029/851/405/GCF_029851405.1_ASM2985140v1	na	assembly from type material	na	haploid	fungi	37534108	37432124	43.500000	0	603	603	Broad Institute	Annotation submitted by Broad Institute	2023-07-27	13169	13016	147	na
GCF_013390195.1	PRJNA670752	SAMN09531620	QPNA00000000.1	reference genome	690259	690259	Colletotrichum siamense	strain=Cg363	na	latest	Contig	Major	Full	2020-07-06	ASM1339019v1	RIKEN	GCA_013390195.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/390/195/GCF_013390195.1_ASM1339019v1	na	na	na	haploid	fungi	62936415	62936415	51.000000	0	22	22	RIKEN	Annotation submitted by RIKEN	2022-02-28	15190	15190	0	na
GCF_001890905.1	PRJNA374040	SAMN00788628	MRCK00000000.1	reference genome	690307	5053	Aspergillus aculeatus ATCC 16872	strain=ATCC 16872	na	latest	Scaffold	Major	Full	2016-12-08	Aspac1	JGI	GCA_001890905.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/890/905/GCF_001890905.1_Aspac1	na	assembly from type material	na	haploid	fungi	35424414	35185997	51.000000	0	660	852	JGI	Annotation submitted by JGI	2025-02-21	11152	10830	321	na
GCF_000320565.1	PRJNA264111	SAMN00120232	AEFD00000000.1	reference genome	692275	85929	Sphaerulina musiva SO2202	strain=SO2202	na	latest	Scaffold	Major	Full	2013-02-27	Septoria musiva SO2202 v1.0	JGI	GCA_000320565.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/320/565/GCF_000320565.1_Septoria_musiva_SO2202_v1.0	na	na	na	haploid	fungi	29352103	28917357	51.000000	0	72	458	JGI	Annotation submitted by JGI	2020-02-05	10228	10144	76	23236275
GCF_000271605.1	PRJNA225512	SAMN02981288	AEJJ00000000.1	reference genome	694068	208960	Fomitiporia mediterranea MF3/22	strain=MF3/22	na	latest	Scaffold	Major	Full	2012-06-29	Fomme1	JGI	GCA_000271605.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/271/605/GCF_000271605.1_Fomme1	na	na	na	haploid	fungi	63354419	56770801	41.000000	0	1412	3952	JGI	Annotation submitted by JGI	2020-02-04	11411	11330	81	22745431
GCF_022702325.1	PRJNA1128325	SAMN25232657	JAKKER000000000.1	reference genome	698441	698440	Drepanopeziza brunnea f. sp. 'multigermtubi'	strain=214-2	na	latest	Contig	Major	Full	2022-03-28	ASM2270232v1	Nanjing Forestry University	GCA_022702325.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/702/325/GCF_022702325.1_ASM2270232v1	na	na	na	haploid	fungi	51946279	51946279	43.000000	0	21	21	Nanjing Forestry University	Annotation submitted by Nanjing Forestry University	2024-06-26	9615	9615	0	na
GCF_001661265.1	PRJNA352842	SAMN00760712	AEUO00000000.1	reference genome	698492	5606	Saitoella complicata NRRL Y-17804	strain=NRRL Y-17804	na	latest	Scaffold	Major	Full	2016-09-09	Saico1	JGI-PSF	GCA_001661265.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/661/265/GCF_001661265.1_Saico1	na	assembly from type material	na	haploid	fungi	14136186	14112686	52.500000	0	35	97	JGI-PSF	Annotation submitted by JGI-PSF	2020-02-05	7200	7023	177	27535936
GCF_022836535.1	PRJNA858243	SAMD00334500	BQXU00000000.1	reference genome	700344	700344	Colletotrichum spaethianum	strain=MAFF 239500	na	latest	Contig	Major	Full	2022-03-29	Cspa_1.0	The University of Tokyo	GCA_022836535.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/836/535/GCF_022836535.1_Cspa_1.0	na	na	na	haploid	fungi	50915707	50915707	51.000000	0	84	84	The University of Tokyo	Annotation submitted by The University of Tokyo	2023-09-15	13261	12842	419	na
GCF_035048745.1	PRJNA1105954	SAMN04287070	JASEJX000000000.1	reference genome	708070	708070	Mucor velutinosus	strain=NIH1002	na	latest	Contig	Major	Full	2024-01-04	Mvel_NIH1002.PB.canu.pilon.trimmedMito	NHGRI	GCA_035048745.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/035/048/745/GCF_035048745.1_Mvel_NIH1002.PB.canu.pilon.trimmedMito	na	na	na	haploid	fungi	40195241	40195241	40.500000	0	42	42	NHGRI	Annotation submitted by NHGRI	2024-05-01	13535	13295	240	na
GCF_027942845.1	PRJNA973277	SAMN30184415	JAPUFF000000000.1	reference genome	710243	710243	Colletotrichum fioriniae	strain=IMI 355084	na	latest	Scaffold	Major	Full	2023-01-23	ASM2794284v1	Royal Botanic Gardens, Kew	GCA_027942845.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/027/942/845/GCF_027942845.1_ASM2794284v1	na	na	na	haploid	fungi	49445812	49445802	52.000000	0	46	46	Royal Botanic Gardens, Kew	Annotation submitted by Royal Botanic Gardens, Kew	2024-06-13	12178	11830	348	na
GCF_000338955.1	PRJNA245120	SAMN02981283	AEIF00000000.1	reference genome	717646	1709381	Baudoinia panamericana UAMH 10762	strain=UAMH 10762	na	latest	Scaffold	Major	Full	2013-02-11	Bauco1	JGI	GCA_000338955.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/338/955/GCF_000338955.1_Bauco1	na	assembly from type material	na	haploid	fungi	21875620	21865565	55.000000	0	19	36	JGI	Annotation submitted by JGI	2020-02-03	10541	10500	38	23236275
GCF_000271585.1	PRJNA242547	SAMN02981287	AEJI00000000.1	reference genome	717944	5325	Trametes versicolor FP-101664 SS1	strain=FP-101664 SS1	na	latest	Scaffold	Major	Full	2012-06-22	Trametes versicolor v1.0	JGI	GCA_000271585.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/271/585/GCF_000271585.1_Trametes_versicolor_v1.0	na	na	na	haploid	fungi	44794008	42885174	57.500000	0	283	977	JGI	Annotation submitted by JGI	2022-04-18	14562	14292	268	22745431
GCF_000264905.1	PRJNA225528	SAMN02981277	AEGX00000000.1	reference genome	721885	40492	Stereum hirsutum FP-91666 SS1	strain=FP-91666 SS1	na	latest	Scaffold	Major	Full	2012-06-04	Stehi1	JGI	GCA_000264905.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/264/905/GCF_000264905.1_Stehi1	na	na	na	haploid	fungi	46511623	45647489	51.500000	0	159	669	JGI	Annotation submitted by JGI	2024-01-02	14449	14062	339	22745431
GCF_000275845.1	PRJNA242541	SAMN02981282	AEID00000000.1	reference genome	732165	114155	Dichomitus squalens LYAD-421 SS1	strain=LYAD-421 SS1	na	latest	Scaffold	Major	Full	2012-07-12	Dichomitus squalens v1.0	JGI	GCA_000275845.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/275/845/GCF_000275845.1_Dichomitus_squalens_v1.0	na	na	na	haploid	fungi	42748430	39457462	55.500000	0	542	1865	JGI	Annotation submitted by JGI	2020-02-04	12497	12275	214	22745431
GCF_000264995.1	PRJNA242546	SAMN00632096	AEGM00000000.1	reference genome	741275	202698	Punctularia strigosozonata HHB-11173 SS5	strain=HHB-11173 SS5	na	latest	Scaffold	Major	Full	2012-06-11	Punctularia strigosozonata v1.0	JGI	GCA_000264995.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/264/995/GCF_000264995.1_Punctularia_strigosozonata_v1.0	na	na	na	haploid	fungi	34171901	33070052	55.000000	0	195	854	JGI	Annotation submitted by JGI	2024-01-02	11644	11537	105	22745431
GCF_000271625.1	PRJNA245129	SAMN02981286	AEIT00000000.1	reference genome	741705	80637	Coniophora puteana RWD-64-598 SS2	strain=RWD-64-598 SS2	na	latest	Scaffold	Major	Full	2012-06-25	Conpu1	DOE Joint Genome Institute	GCA_000271625.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/271/625/GCF_000271625.1_Conpu1	na	na	na	haploid	fungi	42968544	41864241	52.500000	0	210	692	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-01-02	13894	13756	137	22745431
GCF_000320585.1	PRJNA245138	SAMN02743865	AEOJ00000000.1	reference genome	747525	984962	Heterobasidion irregulare TC 32-1	strain=TC 32-1	na	latest	Scaffold	Major	Full	2014-01-17	Heterobasidion irregulare v2.0	JGI	GCA_000320585.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/320/585/GCF_000320585.1_Heterobasidion_irregulare_v2.0	na	na	na	haploid	fungi	33649967	33649644	52.000000	0	15	18	JGI	Annotation submitted by JGI	2024-01-02	13270	13269	0	22463738
GCF_000204055.1	PRJNA242542	SAMN02744053	AECX00000000.1	reference genome	747676	203908	Melampsora larici-populina 98AG31	strain=98AG31	na	latest	Scaffold	Major	Full	2011-04-13	v1.0	US DOE Joint Genome Institute (JGI-PGF)	GCA_000204055.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/204/055/GCF_000204055.1_v1.0	na	na	na	haploid	fungi	101129028	97682699	41.000000	0	462	3254	US DOE Joint Genome Institute (JGI-PGF)	Annotation submitted by US DOE Joint Genome Institute (JGI-PGF)	2023-12-29	16263	16255	0	21536894
GCF_019321695.1	PRJNA774195	SAMN20034750	JAHWGW000000000.1	reference genome	748121	748121	Diaporthe batatas	strain=CRI 302-4	na	latest	Contig	Major	Full	2021-07-22	ASM1932169v1	Crop Research Institute, Guangdong Academy of Agricultural Sciences	GCA_019321695.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/321/695/GCF_019321695.1_ASM1932169v1	na	na	na	haploid	fungi	54186171	54186171	50.500000	0	34	34	Crop Research Institute, Guangdong Academy of Agricultural Sciences	Annotation submitted by Crop Research Institute, Guangdong Academy of Agricultural Sciences	2021-11-23	13864	13864	0	na
GCF_020726555.1	PRJNA801204	SAMN11533434	JAHBNH000000000.1	reference genome	749465	749465	Boeremia exigua	strain=MPI-SDFR-AT-0100	na	latest	Contig	Major	Full	2021-10-29	Boeex1	DOE Joint Genome Institute	GCA_020726555.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/726/555/GCF_020726555.1_Boeex1	na	na	na	haploid	fungi	35322113	35322113	53.000000	0	26	26	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-01-28	12996	12871	124	na
GCF_000225545.1	PRJNA245119	SAMN02981262	ADOT00000000.1	reference genome	756982	2813651	Orbilia oligospora ATCC 24927	strain=ATCC 24927	na	latest	Scaffold	Major	Full	2011-09-08	AOL24927 1.0	Laboratory for Conservation and Utilization of Bio-resources, Yunnan University, Kunming 650091, P. R. China	GCA_000225545.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/225/545/GCF_000225545.1_AOL24927_1.0	na	na	na	haploid	fungi	40072829	39966216	44.500000	0	215	323	Laboratory for Conservation and Utilization of Bio-resources, Yunnan University, Kunming 650091, P. R. China	Annotation submitted by Laboratory for Conservation and Utilization of Bio-resources, Yunnan University, Kunming 650091, P. R. China	2021-03-04	11479	11479	0	na
GCF_000221225.1	PRJNA225505	SAMN02981263	ADUW00000000.1	reference genome	759272	209285	Thermochaetoides thermophila DSM 1495	strain=DSM 1495	na	latest	Scaffold	Major	Full	2011-07-22	CTHT_3.0	EMBL	GCA_000221225.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/221/225/GCF_000221225.1_CTHT_3.0	na	assembly from type material	na	haploid	fungi	28322806	28312548	52.500000	0	21	112	EMBL	Annotation submitted by EMBL	2024-12-02	7473	7164	241	21784248
GCF_001672515.1	PRJNA342684	SAMN04420120	LTAN00000000.1	reference genome	759273	80884	Colletotrichum higginsianum IMI 349063	strain=IMI 349063	na	latest	Chromosome	Major	Full	2016-06-21	ASM167251v1	GATC Biotech AG	GCA_001672515.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/672/515/GCF_001672515.1_ASM167251v1	na	na	na	haploid	fungi	50716103	50716103	54.500000	12	25	25	GATC Biotech AG	Annotation submitted by GATC Biotech AG	2022-02-26	14651	14651	0	na
GCF_001661235.1	PRJNA352841	SAMN00760710	AEHA00000000.1	reference genome	763406	4926	Pichia membranifaciens NRRL Y-2026	strain=NRRL Y-2026	na	latest	Scaffold	Major	Full	2016-09-09	Picme2	JGI-PSF	GCA_001661235.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/661/235/GCF_001661235.1_Picme2	na	assembly from type material	na	haploid	fungi	11582150	11433774	45.000000	0	10	144	NCBI RefSeq	Annotation submitted by NCBI RefSeq	2016-11-14	5701	5542	159	27535936
GCF_001638985.1	PRJNA342701	SAMN00189023	AMYC00000000.1	reference genome	763407	4837	Phycomyces blakesleeanus NRRL 1555(-)	strain=NRRL 1555(-)	na	latest	Scaffold	Major	Full	2016-05-06	Phybl2	JGI-PSF	GCA_001638985.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/638/985/GCF_001638985.1_Phybl2	na	na	na	haploid	fungi	53939167	53368596	36.000000	0	80	350	NCBI RefSeq	Annotation submitted by NCBI RefSeq	2016-09-22	16850	16542	308	na
GCF_000708205.1	PRJNA302309	SAMN02863149	AYOQ00000000.1	reference genome	764103	34349	Mixia osmundae IAM 14324	strain=IAM 14324	na	latest	Scaffold	Major	Full	2014-06-23	Mixia osmundae v1.0	DOE Joint Genome Institute	GCA_000708205.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/708/205/GCF_000708205.1_Mixia_osmundae_v1.0	na	na	na	haploid	fungi	13634488	13556769	55.500000	0	156	208	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-01-05	6838	6838	0	24372469
GCF_001889945.1	PRJNA1151043	SAMN00203938	LJXV00000000.1	reference genome	767769	319629	Aspergillus brasiliensis CBS 101740	strain=CBS 101740	na	latest	Scaffold	Major	Full	2016-12-08	Aspbr1	DOE Joint Genome Institute	GCA_001889945.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/889/945/GCF_001889945.1_Aspbr1	na	assembly from type material	na	haploid	fungi	35804080	35651645	50.500000	0	103	288	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-09-04	13259	12985	269	na
GCF_001692895.1	PRJNA1151040	SAMN04110467	LKKR00000000.1	reference genome	794803	5570	Cenococcum geophilum 1.58	strain=1.58	na	latest	Scaffold	Major	Full	2016-07-26	Cenococcum geophilum 1.58 v2.0	DOE Joint Genome Institute	GCA_001692895.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/692/895/GCF_001692895.1_Cenococcum_geophilum_1.58_v2.0	na	na	na	haploid	fungi	177557160	177413650	37.500000	0	268	625	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-09-04	14733	14695	31	27601008
GCF_001640025.1	PRJNA342695	SAMN04417247	na	reference genome	796027	796027	Sugiyamaella lignohabitans	strain=CBS 10342	na	latest	Complete Genome	Major	Full	2016-05-06	ASM164002v2	University of Natural Resources and Life Sciences	GCA_001640025.2	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/640/025/GCF_001640025.1_ASM164002v2	na	assembly from type material	na	haploid	fungi	15938258	15938258	45.000000	4	4	4	University of Natural Resources and Life Sciences	Annotation submitted by University of Natural Resources and Life Sciences	2024-01-07	5341	5128	213	na
GCF_001646965.1	PRJNA342681	SAMN04498467	LVCJ00000000.1	reference genome	856822	856822	Fonsecaea nubica	strain=CBS 269.64	na	latest	Scaffold	Major	Full	2016-05-18	ASM164696v1	Federal University of Parana	GCA_001646965.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/646/965/GCF_001646965.1_ASM164696v1	na	assembly from type material	na	haploid	fungi	33787447	33787347	52.500000	0	258	258	Federal University of Parana	Annotation submitted by Federal University of Parana	2017-10-02	11717	11681	36	na
GCF_003019875.1	PRJNA453595	SAMN00788613	MADK00000000.1	reference genome	857342	5101	Amorphotheca resinae ATCC 22711	strain=ATCC 22711	na	latest	Scaffold	Major	Full	2018-03-27	Amore1	DOE Joint Genome Institute	GCA_003019875.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/019/875/GCF_003019875.1_Amore1	na	na	na	haploid	fungi	28632918	28460037	47.500000	0	32	309	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2018-04-26	9642	9642	0	29315638
GCF_000230625.1	PRJNA225511	SAMN00760826	AFPA00000000.1	reference genome	858893	5970	Exophiala dermatitidis NIH/UT8656	strain=NIH/UT8656	na	latest	Scaffold	Major	Full	2011-10-19	Exop_derm_V1	Broad Institute	GCA_000230625.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/230/625/GCF_000230625.1_Exop_derm_V1	na	na	na	haploid	fungi	26350763	26346203	51.500000	0	10	238	Broad Institute	Annotation submitted by Broad Institute	2024-01-02	9355	9284	70	28348446
GCF_001664035.1	PRJNA342692	SAMN00773783	LXTC00000000.1	reference genome	869754	27322	Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993	strain=NRRL YB-4993	na	latest	Scaffold	Major	Full	2016-06-17	Metbi1	DOE Joint Genome Institute	GCA_001664035.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/664/035/GCF_001664035.1_Metbi1	na	assembly from type material	na	haploid	fungi	16055203	15677757	48.000000	0	48	48	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2017-08-29	6090	5837	249	27535936
GCF_019207475.1	PRJNA756329	SAMN18128843	JAHLUX000000000.1	reference genome	870730	870730	Ogataea angusta	na	61-244	latest	Contig	Major	Full	2021-07-13	ASM1920747v1	Colorado College	GCA_019207475.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/207/475/GCF_019207475.1_ASM1920747v1	na	na	na	haploid	fungi	8903801	8903801	49.500000	0	84	84	Colorado College	Annotation submitted by Colorado College	2021-11-22	5442	5441	0	na
GCF_000187245.1	PRJNA264114	SAMN02981294	AEOI00000000.2	reference genome	871575	1005962	Ogataea parapolymorpha DL-1	strain=DL-1	na	latest	Chromosome	Major	Full	2013-12-20	Hansenula_2	Centre	GCA_000187245.3	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/187/245/GCF_000187245.1_Hansenula_2	na	assembly from heterotypic synonym type material	na	haploid	fungi	8874589	8870389	48.000000	7	7	10	Centre	Annotation submitted by Centre	2023-12-29	5408	5325	83	24279325
GCF_000146465.1	PRJNA51607	SAMN03081424	na	reference genome	876142	58839	Encephalitozoon intestinalis ATCC 50506	strain=ATCC 50506	na	latest	Chromosome	Major	Full	2010-08-16	ASM14646v1	Keeling lab, University of British Columbia	GCA_000146465.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/146/465/GCF_000146465.1_ASM14646v1	na	na	na	haploid	fungi	2216898	2216798	41.500000	11	11	11	Keeling lab, University of British Columbia	Annotation submitted by Keeling lab, University of British Columbia	2022-04-18	2010	1938	72	20865802;22802648
GCF_008065305.1	PRJNA1120906	SAMN09399338	QKWL00000000.1	reference genome	879819	879819	Cutaneotrichosporon oleaginosum	strain=ATCC 20508	na	latest	Contig	Major	Full	2019-08-22	ASM806530v1	Ruhr-University Bochum	GCA_008065305.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/065/305/GCF_008065305.1_ASM806530v1	na	na	na	haploid	fungi	19820908	19820908	60.500000	0	8	8	Ruhr-University Bochum	Annotation submitted by Ruhr-University Bochum	2024-06-10	7911	7911	0	31490920
GCF_000250985.1	PRJNA242543	SAMN02981274	AEFF00000000.2	reference genome	881290	586133	Nematocida parisii ERTm1	strain=ERTm1	na	latest	Scaffold	Major	Full	2012-05-14	Nema_parisii_ERTm1_V3	Broad Institute	GCA_000250985.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/250/985/GCF_000250985.1_Nema_parisii_ERTm1_V3	na	na	na	haploid	fungi	4071346	4029057	34.500000	0	65	126	Broad Institute	Annotation submitted by Broad Institute	2024-01-02	2724	2661	63	na
GCF_000277815.2	PRJNA173349	SAMN03081428	na	reference genome	907965	27973	Encephalitozoon hellem ATCC 50504	strain=ATCC 50504	na	latest	Chromosome	Major	Full	2012-07-16	ASM27781v3	University of British Columbia	GCA_000277815.3	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/277/815/GCF_000277815.2_ASM27781v3	na	na	na	haploid	fungi	2251784	2251784	43.500000	11	12	12	University of British Columbia	Annotation submitted by University of British Columbia	2023-09-27	2006	1928	78	22802648
GCF_041956535.1	PRJNA1175691	SAMN39447164	JAZGQU000000000.1	reference genome	911321	911321	Calcarisporiella thermophila	strain=CBS 279.70	na	latest	Scaffold	Major	Full	2024-09-16	Calth1	DOE Joint Genome Institute	GCA_041956535.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/041/956/535/GCF_041956535.1_Calth1	na	assembly from type material	na	haploid	fungi	28155144	27010714	44.500000	0	116	670	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-10-23	12118	11722	396	39266695
GCF_000523435.1	PRJNA245123	SAMN02981449	AMCN00000000.1	reference genome	930089	5017	Bipolaris zeicola 26-R-13	strain=26-R-13	na	latest	Scaffold	Major	Full	2014-01-30	Cochliobolus carbonum v1.0	JGI	GCA_000523435.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/523/435/GCF_000523435.1_Cochliobolus_carbonum_v1.0	na	na	na	haploid	fungi	31267936	31249390	51.000000	0	844	882	JGI	Annotation submitted by JGI	2024-01-05	12848	12848	0	23357949
GCF_000523455.1	PRJNA245121	SAMN02981450	AMCO00000000.1	reference genome	930090	101162	Bipolaris oryzae ATCC 44560	strain=ATCC 44560	na	latest	Scaffold	Major	Full	2014-01-30	Cochliobolus miyabeanus v1.0	JGI	GCA_000523455.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/523/455/GCF_000523455.1_Cochliobolus_miyabeanus_v1.0	na	na	na	haploid	fungi	31362097	31327767	50.500000	0	619	671	JGI	Annotation submitted by JGI	2024-01-05	12000	12000	0	23357949
GCF_000527765.1	PRJNA302306	SAMN02981453	AMCY00000000.1	reference genome	930091	40125	Bipolaris victoriae FI3	strain=FI3	na	latest	Scaffold	Major	Full	2014-02-03	Cochliobolus victoriae v1.0	JGI	GCA_000527765.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/527/765/GCF_000527765.1_Cochliobolus_victoriae_v1.0	na	na	na	haploid	fungi	32829575	32820081	50.000000	0	676	714	NCBI RefSeq	Annotation submitted by NCBI RefSeq	2015-11-18	12882	12882	0	23357949
GCF_000235365.1	PRJNA78153	SAMN03081426	na	reference genome	931890	45285	Eremothecium cymbalariae DBVPG#7215	strain=DBVPG#7215	na	latest	Chromosome	Major	Full	2011-11-14	ASM23536v1	Carlsberg Laboratory	GCA_000235365.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/235/365/GCF_000235365.1_ASM23536v1	na	na	na	haploid	fungi	9669424	9669411	40.500000	8	8	8	Carlsberg Laboratory	Annotation submitted by Carlsberg Laboratory	2025-07-15	4851	4432	151	22384365
GCF_000300575.1	PRJNA225500	SAMN02744070	AEOK00000000.1	reference genome	936046	5341	Agaricus bisporus var. bisporus H97	strain=H97	na	latest	Scaffold	Major	Full	2012-11-30	Agabi_varbisH97_2	JGI	GCA_000300575.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/300/575/GCF_000300575.1_Agabi_varbisH97_2	na	na	na	haploid	fungi	30233745	30028778	46.500000	0	29	254	NCBI RefSeq	Annotation submitted by NCBI RefSeq	2014-01-02	10606	10444	157	23045686
GCF_024613125.1	PRJNA895881	SAMN12796357	JANFAG000000000.1	reference genome	936130	936130	Pisolithus orientalis	strain=OTSU	na	latest	Contig	Major	Full	2022-08-10	Pisori2	DOE Joint Genome Institute	GCA_024613125.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/613/125/GCF_024613125.1_Pisori2	na	na	na	haploid	fungi	57997239	57997239	48.000000	0	537	537	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-11-03	12436	12202	208	na
GCF_000192795.1	PRJNA242548	SAMN02981300	AEUG00000000.1	reference genome	948595	103449	Vavraia culicis subsp. floridensis	strain=floridensis	na	latest	Scaffold	Major	Full	2011-03-22	Vavr_culi_floridensis_V1	Broad Institute	GCA_000192795.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/192/795/GCF_000192795.1_Vavr_culi_floridensis_V1	na	na	na	haploid	fungi	6118689	6033837	39.500000	0	379	501	NCBI RefSeq	Annotation submitted by NCBI RefSeq	2014-07-23	2825	2773	52	na
GCF_000225605.1	PRJNA225510	SAMN02981304	AEVU00000000.1	reference genome	983644	73501	Cordyceps militaris CM01	strain=CM01	na	latest	Scaffold	Major	Full	2011-09-12	CmilitarisCM01_v01	Shanghai Institutes for Biological Sciences (SIBS), Chinese Academy of Sciences	GCA_000225605.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/225/605/GCF_000225605.1_CmilitarisCM01_v01	na	na	na	haploid	fungi	32268578	32212078	51.500000	0	32	597	Shanghai Institutes for Biological Sciences (SIBS), Chinese Academy of Sciences	Annotation submitted by Shanghai Institutes for Biological Sciences (SIBS), Chinese Academy of Sciences	2024-01-02	9651	9651	0	22112802
GCF_003025095.1	PRJNA453596	SAMN00761861	MBGI00000000.1	reference genome	983964	5544	Trichoderma harzianum CBS 226.95	strain=CBS 226.95	na	latest	Scaffold	Major	Full	2018-03-30	Triha v1.0	DOE Joint Genome Institute	GCA_003025095.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/025/095/GCF_003025095.1_Triha_v1.0	na	assembly designated as neotype	na	haploid	fungi	40980648	40956379	47.500000	0	532	841	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2018-04-26	14294	14064	205	na
GCF_001661405.1	PRJNA374042	SAMN02616005	LTAD00000000.1	reference genome	983966	4903	Cyberlindnera jadinii NRRL Y-1542	strain=NRRL Y-1542	na	latest	Scaffold	Major	Full	2016-09-15	Cybja1	DOE Joint Genome Institute	GCA_001661405.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/661/405/GCF_001661405.1_Cybja1	na	assembly from type material	na	haploid	fungi	13018415	12757021	44.500000	0	76	392	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-07-15	6184	6032	152	27535936
GCF_001661395.1	PRJNA374043	SAMN00794652	LYBQ00000000.1	reference genome	984485	717740	Hyphopichia burtonii NRRL Y-1933	strain=NRRL Y-1933	na	latest	Scaffold	Major	Full	2016-09-15	Hypbu1	DOE Joint Genome Institute	GCA_001661395.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/661/395/GCF_001661395.1_Hypbu1	na	assembly from type material	na	haploid	fungi	12403110	12346325	35.000000	0	27	243	NCBI RefSeq	Annotation submitted by NCBI RefSeq	2017-02-15	6166	5995	171	27535936
GCF_001661335.1	PRJNA352836	SAMN00794393	LWKO00000000.1	reference genome	984486	45609	Babjeviella inositovora NRRL Y-12698	strain=NRRL Y-12698	na	latest	Scaffold	Major	Full	2016-09-09	Babin1	DOE Joint Genome Institute	GCA_001661335.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/661/335/GCF_001661335.1_Babin1	na	assembly from type material	na	haploid	fungi	15221050	15052886	48.000000	0	49	211	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2020-02-03	6795	6397	393	27535936
GCF_001661415.1	PRJNA374041	SAMN00794653	LYME00000000.1	reference genome	984487	46583	Suhomyces tanzawaensis NRRL Y-17324	strain=NRRL Y-17324	na	latest	Scaffold	Major	Full	2016-09-15	Canta1	DOE Joint Genome Institute	GCA_001661415.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/661/415/GCF_001661415.1_Canta1	na	assembly from type material	na	haploid	fungi	13136204	13103345	45.500000	0	16	249	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2019-11-29	6143	5884	257	27535936
GCF_038025025.1	PRJNA1140297	SAMN18252025	JBBPEH000000000.1	reference genome	989973	989973	Phyllosticta citribraziliensis	strain=CPC 17464	na	latest	Contig	Major	Full	2024-04-09	Pcit17464	DOE Joint Genome Institute	GCA_038025025.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/038/025/025/GCF_038025025.1_Pcit17464	na	na	na	haploid	fungi	31354043	31354043	54.500000	0	22	22	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-07-31	10847	10694	144	na
GCF_000231115.1	PRJNA242549	SAMN02981316	AEYK00000000.1	reference genome	993615	42399	Vittaforma corneae ATCC 50505	strain=ATCC 50505	na	latest	Scaffold	Major	Full	2011-10-21	Vitt_corn_V1	Broad Institute	GCA_000231115.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/231/115/GCF_000231115.1_Vitt_corn_V1	na	na	na	haploid	fungi	3213516	3148737	36.500000	0	220	314	Broad Institute	Annotation submitted by Broad Institute	2024-01-02	2293	2239	54	na
GCF_028828465.1	PRJNA973687	SAMN30185363	JAQJAT000000000.1	reference genome	1002107	1002107	Penicillium psychrosexuale	strain=IBT 29551	na	latest	Contig	Major	Full	2023-02-23	ASM2882846v1	Aalborg University	GCA_028828465.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/828/465/GCF_028828465.1_ASM2882846v1	na	na	na	haploid	fungi	27827857	27827857	48.000000	0	8	8	Aalborg University	Annotation submitted by Aalborg University	2023-06-12	10487	10487	0	36726175
GCF_001417885.1	PRJNA264644	SAMD00067077	na	reference genome	1003335	4911	Kluyveromyces marxianus DMKU3-1042	strain=DMKU3-1042	na	latest	Complete Genome	Major	Full	2014-01-14	Kmar_1.0	Yamaguchi University	GCA_001417885.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/417/885/GCF_001417885.1_Kmar_1.0	na	na	na	haploid	fungi	10920159	10920159	40.000000	8	8	8	Yamaguchi University	Annotation submitted by Yamaguchi University	2025-07-15	5151	4941	210	25834639
GCF_000303195.2	PRJNA242845	SAMN02981337	AFNW00000000.1	reference genome	1028729	101028	Fusarium pseudograminearum CS3096	strain=CS3096	na	latest	Chromosome	Major	Full	2015-04-15	FP7	CSIRO	GCA_000303195.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/303/195/GCF_000303195.2_FP7	na	na	na	haploid	fungi	36863345	36825645	48.000000	4	279	656	CSIRO	Annotation submitted by CSIRO	2024-01-17	12445	12445	0	23028337
GCF_001890125.1	PRJNA721993	SAMN02744095	MRBN00000000.1	reference genome	1036611	46472	Aspergillus versicolor CBS 583.65	strain=CBS 583.65	na	latest	Scaffold	Major	Full	2016-12-06	Aspve1	DOE Joint Genome Institute	GCA_001890125.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/890/125/GCF_001890125.1_Aspve1	na	assembly designated as neotype	na	haploid	fungi	33126810	33121003	50.000000	0	51	129	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-21	13361	13219	141	na
GCF_001890705.1	PRJNA721994	SAMN02744090	MRCH00000000.1	reference genome	1036612	75750	Aspergillus sydowii CBS 593.65	strain=CBS 593.65	na	latest	Scaffold	Major	Full	2016-12-08	Aspsy1	DOE Joint Genome Institute	GCA_001890705.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/890/705/GCF_001890705.1_Aspsy1	na	assembly designated as neotype	na	haploid	fungi	34381026	34349148	50.000000	0	97	1181	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-21	13716	13578	137	na
GCF_000711695.1	PRJNA292597	SAMN00794506	JMSN00000000.1	reference genome	1037660	5281	Tilletiaria anomala UBC 951	strain=UBC 951	na	latest	Contig	Major	Full	2014-05-23	Tilletiaria anomala UBC 951 v1.0	DOE Joint Genome Institute	GCA_000711695.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/711/695/GCF_000711695.1_Tilletiaria_anomala_UBC_951_v1.0	na	assembly from type material	na	haploid	fungi	18704010	18704010	56.000000	0	289	289	NCBI RefSeq	Annotation submitted by NCBI RefSeq	2015-08-12	6869	6805	63	24926052
GCF_000313485.1	PRJNA248426	SAMEA2272793	CAIF00000000.1	reference genome	1041607	1041607	Wickerhamomyces ciferrii	strain=NRRL Y-1031 F-60-10	na	latest	Contig	Major	Full	2012-09-21	ASM31348v1	Center for Biotechnology	GCA_000313485.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/313/485/GCF_000313485.1_ASM31348v1	na	assembly from type material	na	haploid	fungi	15901152	15901152	30.500000	0	364	364	Center for Biotechnology	Annotation submitted by Center for Biotechnology	2025-07-15	6702	6702	0	na
GCF_019915245.1	PRJNA774198	SAMN18537367	JAHBCI000000000.1	reference genome	1042133	1042133	Fusarium musae	strain=F31	na	latest	Chromosome	Major	Full	2021-09-09	ASM1991524v1	universita degli studi di milano	GCA_019915245.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/915/245/GCF_019915245.1_ASM1991524v1	na	na	na	haploid	fungi	44015302	44015302	47.000000	12	13	13	universita degli studi di milano	Annotation submitted by universita degli studi di milano	2021-11-23	13962	13672	290	34388352
GCF_000721785.1	PRJNA554128	SAMN02744100	AYEO00000000.1	reference genome	1043002	5580	Aureobasidium pullulans EXF-150	strain=EXF-150	na	latest	Scaffold	Major	Full	2014-07-08	Aureobasidium pullulans var. pullulans EXF-150, assembly version 1.0	DOE Joint Genome Institute	GCA_000721785.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/721/785/GCF_000721785.1_Aureobasidium_pullulans_var._pullulans_EXF-150_assembly_version_1.0	na	na	na	haploid	fungi	29621078	29585801	50.000000	0	186	209	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2019-07-12	11844	11844	0	24984952
GCF_000721775.1	PRJNA721987	SAMN02744098	AYEN00000000.1	reference genome	1043003	46634	Aureobasidium melanogenum CBS 110374	strain=CBS 110374	na	latest	Scaffold	Major	Full	2014-07-08	Aureobasidium pullulans var. melanogenum CBS 110374 v1.0	DOE Joint Genome Institute	GCA_000721775.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/721/775/GCF_000721775.1_Aureobasidium_pullulans_var._melanogenum_CBS_110374_v1.0	na	na	na	haploid	fungi	26203324	26199752	50.000000	0	150	174	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2021-04-21	10582	10582	0	24984952
GCF_000721765.1	PRJNA292600	SAMN02744099	AYEM00000000.1	reference genome	1043004	559561	Aureobasidium namibiae CBS 147.97	strain=CBS 147.97	na	latest	Scaffold	Major	Full	2014-07-08	Aureobasidium pullulans var. namibiae CBS 147.97 v1.0	DOE Joint Genome Institute	GCA_000721765.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/721/765/GCF_000721765.1_Aureobasidium_pullulans_var._namibiae_CBS_147.97_v1.0	na	assembly from type material	na	haploid	fungi	25428601	25427801	51.000000	0	47	55	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-01-05	10259	10259	0	24984952
GCF_000721755.1	PRJNA292599	SAMN02744088	AYYB00000000.1	reference genome	1043005	1042127	Aureobasidium subglaciale EXF-2481	strain=EXF-2481	na	latest	Scaffold	Major	Full	2014-07-08	Aureobasidium pullulans var. subglaciale EXF-2481 v1.0	JGI	GCA_000721755.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/721/755/GCF_000721755.1_Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0	na	assembly from type material	na	haploid	fungi	25796716	25791175	51.000000	0	75	85	JGI	Annotation submitted by JGI	2024-01-05	10792	10792	0	24984952
GCF_003724135.2	PRJNA531016	SAMN10135221	RBVV00000000.1	reference genome	1051616	1051616	Verticillium nonalfalfae	strain=VnAa140/NRRL 66861	na	latest	Scaffold	Minor	Full	2018-11-13	ASM372413v2	West Virignia University	GCA_003724135.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/724/135/GCF_003724135.2_ASM372413v2	na	na	na	haploid	fungi	31747483	31746256	55.000000	0	628	628	West Virignia University	Annotation submitted by West Virignia University	2023-12-29	9626	9430	196	30701257
GCF_011745625.1	PRJNA1175685	SAMN14329494	JAAQHG000000000.2	reference genome	1052096	1052096	Cladosporium halotolerans	strain=TM138-S3	na	latest	Scaffold	Major	Full	2024-08-22	ASM1174562v2	Hellenic Centre of Marine Research (HCMR)	GCA_011745625.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/745/625/GCF_011745625.1_ASM1174562v2	na	na	na	haploid	fungi	27912799	27911865	56.000000	0	691	691	Hellenic Centre of Marine Research (HCMR)	Annotation submitted by Hellenic Centre of Marine Research (HCMR)	2024-10-23	9704	9704	0	32354980
GCF_016861625.1	PRJNA727292	SAMD00269936	na	reference genome	1069201	1069201	Aspergillus luchuensis	strain=IFO 4308	na	latest	Complete Genome	Major	Full	2021-01-30	AkawachiiIFO4308_assembly01	Fermentation Microbiology, Education and Research Center for Fermentation Studies, Faculty of Agriculture, Kagoshima University	GCA_016861625.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/861/625/GCF_016861625.1_AkawachiiIFO4308_assembly01	na	na	na	haploid	fungi	37256495	37256495	49.000000	8	8	8	Fermentation Microbiology, Education and Research Center for Fermentation Studies, Faculty of Agriculture, Kagoshima University	Annotation submitted by Fermentation Microbiology, Education and Research Center for Fermentation Studies, Faculty of Agriculture, Kagoshima University	2025-02-22	12941	12662	279	na
GCF_000349005.2	PRJNA245145	SAMN00102820	AFWA00000000.2	reference genome	1069680	263815	Pneumocystis murina B123	strain=B123	na	latest	Contig	Major	Full	2015-12-22	Pneumo_murina_B123_V4	Broad Institute	GCA_000349005.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/349/005/GCF_000349005.2_Pneumo_murina_B123_V4	na	na	na	haploid	fungi	7501343	7501343	27.000000	0	20	20	Broad Institute	Annotation submitted by Broad Institute	2017-08-29	3675	3623	52	na
GCF_023601865.1	PRJNA926525	SAMN18830867	JAGXNN000000000.2	reference genome	1070780	1070780	Aspergillus affinis	strain=CMG 70	na	latest	Scaffold	Major	Full	2022-10-03	ASM2360186v2	Universidade de Aveiro	GCA_023601865.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/601/865/GCF_023601865.1_ASM2360186v2	na	na	na	haploid	fungi	37565501	37565166	50.000000	0	421	421	Universidade de Aveiro	Annotation submitted by Universidade de Aveiro	2025-02-22	11660	11660	0	34947073
GCF_000227115.2	PRJNA79341	SAMEA2272418	na	reference genome	1071378	27289	Naumovozyma dairenensis CBS 421	strain=type strain:CBS 421	na	latest	Chromosome	Major	Full	2012-08-20	ASM22711v2	Wolfe Laboratory, Smurfit Institute of Genetics, Trinity College Dublin, Ireland	GCA_000227115.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/227/115/GCF_000227115.2_ASM22711v2	na	assembly from type material	na	haploid	fungi	13527580	13485324	34.000000	11	11	11	Wolfe Laboratory, Smurfit Institute of Genetics, Trinity College Dublin, Ireland	Annotation submitted by Wolfe Laboratory, Smurfit Institute of Genetics, Trinity College Dublin, Ireland	2025-07-15	5814	5546	268	22123960
GCF_000315915.1	PRJNA188088	SAMEA2271984	na	reference genome	1071380	1071379	Henningerozyma blattae CBS 6284	strain=type strain:CBS 6284	na	latest	Chromosome	Major	Full	2012-05-11	ASM31591v1	Wolfe Laboratory, Smurfit Institute of Genetics, Trinity College Dublin, Ireland	GCA_000315915.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/315/915/GCF_000315915.1_ASM31591v1	na	assembly from type material	na	haploid	fungi	14048593	14045573	31.500000	10	10	10	Wolfe Laboratory, Smurfit Institute of Genetics, Trinity College Dublin, Ireland	Annotation submitted by Wolfe Laboratory, Smurfit Institute of Genetics, Trinity College Dublin, Ireland	2025-07-15	5725	5388	337	22123960
GCF_000236905.1	PRJNA79335	SAMEA2272094	na	reference genome	1071381	113608	Tetrapisispora phaffii CBS 4417	strain=type strain:CBS 4417	na	latest	Chromosome	Major	Full	2011-11-17	ASM23690v1	Wolfe Laboratory, Smurfit Institute of Genetics, Trinity College Dublin, Ireland	GCA_000236905.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/236/905/GCF_000236905.1_ASM23690v1	na	assembly from type material	na	haploid	fungi	12115070	12099635	33.500000	16	17	17	Wolfe Laboratory, Smurfit Institute of Genetics, Trinity College Dublin, Ireland	Annotation submitted by Wolfe Laboratory, Smurfit Institute of Genetics, Trinity College Dublin, Ireland	2025-07-15	5462	5252	210	22123960
GCF_000304475.1	PRJNA178246	SAMEA2272790	na	reference genome	1071382	432096	Kazachstania africana CBS 2517	strain=type strain:CBS 2517	na	latest	Chromosome	Major	Full	2012-01-17	Ka_CBS2517	Wolfe Laboratory, Smurfit Institute of Genetics, Trinity College Dublin, Ireland	GCA_000304475.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/304/475/GCF_000304475.1_Ka_CBS2517	na	assembly from type material	na	haploid	fungi	11130140	11126917	36.500000	12	12	12	Wolfe Laboratory, Smurfit Institute of Genetics, Trinity College Dublin, Ireland	Annotation submitted by Wolfe Laboratory, Smurfit Institute of Genetics, Trinity College Dublin, Ireland	2025-07-15	5646	5375	271	22123960
GCF_000348985.1	PRJNA244480	SAMEA2272481	na	reference genome	1071383	588726	Huiozyma naganishii CBS 8797	strain=type strain:CBS 8797	na	latest	Chromosome	Major	Full	2012-09-05	ASM34898v1	Wolfe Laboratory, Smurfit Institute of Genetics, Trinity College Dublin, Ireland	GCA_000348985.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/348/985/GCF_000348985.1_ASM34898v1	na	assembly from type material	na	haploid	fungi	10845821	10842414	46.000000	13	13	13	Wolfe Laboratory, Smurfit Institute of Genetics, Trinity College Dublin, Ireland	Annotation submitted by Wolfe Laboratory, Smurfit Institute of Genetics, Trinity College Dublin, Ireland	2025-07-15	5486	5319	167	22123960
GCF_001890725.1	PRJNA721995	SAMN02744089	LJSE00000000.1	reference genome	1073089	5066	Aspergillus wentii DTO 134E9	strain=DTO 134E9	na	latest	Scaffold	Major	Full	2016-12-08	Aspwe1	DOE Joint Genome Institute	GCA_001890725.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/890/725/GCF_001890725.1_Aspwe1	na	na	na	haploid	fungi	31350635	31295010	48.000000	0	27	118	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-21	12657	12433	221	na
GCF_001890105.1	PRJNA395482	SAMN02194405	MRBM00000000.1	reference genome	1073090	41063	Penicilliopsis zonata CBS 506.65	strain=CBS 506.65	na	latest	Scaffold	Major	Full	2016-12-08	Aspzo1	DOE Joint Genome Institute	GCA_001890105.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/890/105/GCF_001890105.1_Aspzo1	na	assembly from type material	na	haploid	fungi	26088231	26015890	50.000000	0	246	428	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2017-10-03	10027	9869	155	na
GCF_036850825.1	PRJNA1105969	SAMN37367388	JAXBDH000000000.1	reference genome	1078765	1078765	Scheffersomyces amazonensis	strain=UFMG-HMD-26.3	na	latest	Contig	Major	Full	2024-02-23	Schama1	DOE Joint Genome Institute	GCA_036850825.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/036/850/825/GCF_036850825.1_Schama1	na	assembly from type material	na	haploid	fungi	14209774	14209774	32.000000	0	9	9	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-05-01	6209	6070	138	38321504
GCF_021365365.1	PRJNA801215	SAMN05720459	JAJTIX000000000.1	reference genome	1079257	1079257	Ilyonectria robusta	strain=PMI_751	na	latest	Contig	Major	Full	2022-01-05	Ilyrob1	DOE Joint Genome Institute	GCA_021365365.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/365/365/GCF_021365365.1_Ilyrob1	na	na	na	haploid	fungi	59648482	59648482	51.500000	0	268	268	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-03-14	20715	20496	196	na
GCF_028827665.1	PRJNA973687	SAMN30185340	JAQJAD000000000.1	reference genome	1080232	1080232	Penicillium hispanicum	strain=IBT 35686	na	latest	Contig	Major	Full	2023-02-23	ASM2882766v1	Aalborg University	GCA_028827665.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/827/665/GCF_028827665.1_ASM2882766v1	na	na	na	haploid	fungi	27868179	27868179	50.500000	0	9	9	Aalborg University	Annotation submitted by Aalborg University	2023-06-06	10111	10111	0	36726175
GCF_010093935.1	PRJNA625780	SAMN00809353	JAAEIS000000000.1	reference genome	1080233	395010	Zasmidium cellare ATCC 36951	strain=ATCC 36951	na	latest	Scaffold	Major	Full	2020-01-31	Zasce1	DOE Joint Genome Institute	GCA_010093935.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/093/935/GCF_010093935.1_Zasce1	na	assembly designated as neotype	na	haploid	fungi	38247703	38198564	53.500000	0	267	365	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2020-04-27	16072	16015	50	na
GCF_001298625.1	PRJNA342694	SAMN02716114	JMCK00000000.1	reference genome	1080349	1080349	Saccharomyces eubayanus	strain=FM1318	na	latest	Chromosome	Major	Full	2015-11-04	SEUB3.0	University of Wisconsin-Madison	GCA_001298625.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/298/625/GCF_001298625.1_SEUB3.0	na	na	na	haploid	fungi	11670174	11548202	40.000000	17	23	23	University of Wisconsin-Madison	Annotation submitted by University of Wisconsin-Madison	2025-07-15	5687	5379	308	26269586
GCF_000804445.1	PRJNA721988	SAMN03268435	AZHE00000000.1	reference genome	1081103	92629	Metarhizium album ARSEF 1941	strain=ARSEF 1941	na	latest	Scaffold	Major	Full	2014-12-18	MAM 1.0 for version 1 of the Metarhizium album genome	Shanghai Institutes for Biological Sciences, CAS	GCA_000804445.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/804/445/GCF_000804445.1_MAM_1.0_for_version_1_of_the_Metarhizium_album_genome	na	na	na	haploid	fungi	30449065	30132239	53.000000	0	257	257	Shanghai Institutes for Biological Sciences, CAS	Annotation submitted by Shanghai Institutes for Biological Sciences, CAS	2021-04-20	8472	8472	0	25368161
GCF_001636725.1	PRJNA342686	SAMN04908328	AZHB00000000.1	reference genome	1081104	114497	Cordyceps fumosorosea ARSEF 2679	strain=ARSEF 2679	na	latest	Scaffold	Major	Full	2016-05-04	ISF 1.0	Shanghai Institutes for Biological Sciences, CAS	GCA_001636725.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/636/725/GCF_001636725.1_ISF_1.0	na	na	na	haploid	fungi	33485962	33399778	53.500000	0	430	430	Shanghai Institutes for Biological Sciences, CAS	Annotation submitted by Shanghai Institutes for Biological Sciences, CAS	2017-08-28	10061	10061	0	27071652
GCF_000260195.1	PRJNA309638	SAMN02981379	AGND00000000.1	reference genome	1089451	2502994	Fusarium odoratissimum NRRL 54006	strain=54006	na	latest	Scaffold	Major	Full	2014-02-19	FO_II5_V1	Broad Institute	GCA_000260195.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/260/195/GCF_000260195.1_FO_II5_V1	na	na	na	haploid	fungi	46553780	46425687	47.500000	0	418	716	Broad Institute	Annotation submitted by Broad Institute	2020-08-07	16975	16634	334	na
GCF_030411735.1	PRJNA1031627	SAMN34105750	JAUFRD000000000.1	reference genome	1093897	1093897	Phialemonium atrogriseum	strain=8032-3	na	latest	Scaffold	Major	Full	2023-06-30	Phiatr1	DOE Joint Genome Institute	GCA_030411735.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/411/735/GCF_030411735.1_Phiatr1	na	na	na	haploid	fungi	33593884	33591196	55.000000	0	82	237	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2023-10-30	11483	11400	83	na
GCF_004353045.1	PRJNA576244	SAMN11041535	SKBQ00000000.1	reference genome	1093900	1093900	Thyridium curvatum	strain=D216	na	latest	Contig	Major	Full	2019-03-15	ASM435304v1	UES / AFRL	GCA_004353045.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/353/045/GCF_004353045.1_ASM435304v1	na	na	na	haploid	fungi	40366568	40366568	55.000000	0	359	359	UES / AFRL	Annotation submitted by UES / AFRL	2023-12-28	12451	12451	0	na
GCF_012550715.1	PRJNA645152	SAMN13870095	JAANYQ000000000.1	reference genome	1094350	1094350	Geosmithia morbida	na	1262	latest	Scaffold	Major	Full	2020-04-20	ASM1255071v1	University of Tennessee Knoxville	GCA_012550715.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/550/715/GCF_012550715.1_ASM1255071v1	na	na	na	haploid	fungi	26543684	26041259	54.500000	0	72	72	University of Tennessee Knoxville	Annotation submitted by University of Tennessee Knoxville	2020-08-04	7826	7812	0	na
GCF_011947395.1	PRJNA691333	SAMN14421089	JAATWM000000000.2	reference genome	1095194	1095194	Colletotrichum karsti	strain=CkLH20	na	latest	Scaffold	Major	Full	2020-12-08	ASM1194739v2	Central South University of Forestry and Technology	GCA_011947395.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/947/395/GCF_011947395.1_ASM1194739v2	na	na	na	haploid	fungi	51850041	51849281	52.500000	0	127	127	Central South University of Forestry and Technology	Annotation submitted by Central South University of Forestry and Technology	2022-02-25	13328	13328	0	na
GCF_002865645.1	PRJNA453592	SAMN02194342	LXPI00000000.1	reference genome	1095630	2482752	Hyaloscypha bicolor E	strain=E	na	latest	Scaffold	Major	Full	2018-01-08	Melbi2	DOE Joint Genome Institute	GCA_002865645.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/865/645/GCF_002865645.1_Melbi2	na	na	na	haploid	fungi	82384847	82267893	38.500000	0	206	301	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2020-02-07	18640	18598	28	na
GCF_028828025.1	PRJNA973687	SAMN30185368	JAQKAF000000000.1	reference genome	1108849	1108849	Penicillium rubens	strain=IBT 27055	na	latest	Contig	Major	Full	2023-02-23	ASM2882802v1	Aalborg University	GCA_028828025.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/828/025/GCF_028828025.1_ASM2882802v1	na	na	na	haploid	fungi	30336503	30336503	49.000000	0	4	4	Aalborg University	Annotation submitted by Aalborg University	2023-12-04	11626	11626	0	36726175
GCF_000409485.1	PRJNA246203	SAMN02981444	ALVE00000000.1	reference genome	1116229	101852	Glarea lozoyensis ATCC 20868	strain=ATCC 20868	na	latest	Scaffold	Major	Full	2013-06-14	GLAREA	Institute Of Microbiology, Chinese Academy of Sciences 	GCA_000409485.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/409/485/GCF_000409485.1_GLAREA	na	assembly from type material	na	haploid	fungi	39509734	39168639	46.000000	0	22	239	Institute Of Microbiology, Chinese Academy of Sciences 	Annotation submitted by Institute Of Microbiology, Chinese Academy of Sciences 	2024-01-05	13081	13081	0	23688303
GCF_038497785.1	PRJNA1141520	SAMN39621395	JBBIXB000000000.1	reference genome	1125753	1125753	Limtongia smithiae	strain=NRRL Y-17922	na	latest	Scaffold	Major	Full	2024-04-24	Lipsmi1	DOE Joint Genome Institute	GCA_038497785.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/038/497/785/GCF_038497785.1_Lipsmi1	na	assembly from type material	na	haploid	fungi	14146010	14145692	54.000000	0	42	48	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-07-31	6123	6067	56	38638323
GCF_000320785.1	PRJNA264108	SAMN01081617	ALAU00000000.1	reference genome	1130832	5286	Rhodotorula toruloides NP11	strain=NP11	na	latest	Scaffold	Major	Full	2013-04-01	RHOziaDV1.0	Dalian Institute of Chemical Physics	GCA_000320785.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/320/785/GCF_000320785.1_RHOziaDV1.0	na	na	na	haploid	fungi	20223942	20180280	62.000000	0	94	304	Dalian Institute of Chemical Physics	Annotation submitted by Dalian Institute of Chemical Physics	2024-01-02	8171	8140	0	23047670
GCF_028827165.1	PRJNA973687	SAMN30185324	JAPZBU000000000.1	reference genome	1131564	1131564	Penicillium cosmopolitanum	strain=IBT 29677	na	latest	Contig	Major	Full	2023-02-23	ASM2882716v1	Aalborg University	GCA_028827165.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/827/165/GCF_028827165.1_ASM2882716v1	na	na	na	haploid	fungi	40034523	40034523	48.500000	0	13	13	Aalborg University	Annotation submitted by Aalborg University	2023-06-06	14288	14273	0	36726175
GCF_028826775.1	PRJNA973687	SAMN30185296	JAPQKI000000000.1	reference genome	1131581	1131581	Penicillium argentinense	strain=IBT 30761	na	latest	Contig	Major	Full	2023-02-23	ASM2882677v1	Aalborg University	GCA_028826775.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/826/775/GCF_028826775.1_ASM2882677v1	na	na	na	haploid	fungi	33838379	33838379	51.000000	0	11	11	Aalborg University	Annotation submitted by Aalborg University	2023-06-06	12143	12143	0	36726175
GCF_021365285.1	PRJNA801214	SAMN05720779	JAJTJA000000000.1	reference genome	1131652	1131652	Talaromyces proteolyticus	strain=PMI_201	na	latest	Contig	Major	Full	2022-01-05	Talpro1	DOE Joint Genome Institute	GCA_021365285.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/365/285/GCF_021365285.1_Talpro1	na	na	na	haploid	fungi	37611490	37611490	45.500000	0	30	30	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-03-13	13665	13585	80	na
GCF_028827265.1	PRJNA973687	SAMN30185297	JAPZBN000000000.1	reference genome	1132637	1132637	Penicillium atrosanguineum	strain=IBT 20685	na	latest	Contig	Major	Full	2023-02-23	ASM2882726v1	Aalborg University	GCA_028827265.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/827/265/GCF_028827265.1_ASM2882726v1	na	na	na	haploid	fungi	28612168	28612168	50.500000	0	8	8	Aalborg University	Annotation submitted by Aalborg University	2023-06-06	10999	10997	0	36726175
GCF_000315875.1	PRJNA172186	SAMEA2272376	na	reference genome	1136231	273371	Candida orthopsilosis Co 90-125	strain=Co 90-125	na	latest	Chromosome	Major	Full	2012-03-14	ASM31587v1	Trinity College Dublin	GCA_000315875.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/315/875/GCF_000315875.1_ASM31587v1	na	na	na	haploid	fungi	12659401	12482133	37.500000	8	8	8	Trinity College Dublin	Annotation submitted by Trinity College Dublin	2017-09-26	5782	5678	82	22563396
GCF_002105095.1	PRJNA721998	SAMN05421895	MCFJ00000000.1	reference genome	1141098	1141098	Pseudomassariella vexata	strain=CBS 129021	na	latest	Contig	Major	Full	2017-04-20	Pseve2	DOE Joint Genome Institute	GCA_002105095.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/105/095/GCF_002105095.1_Pseve2	na	assembly from type material	na	haploid	fungi	44711451	44711451	50.500000	0	37	37	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2021-04-20	12950	12564	382	na
GCF_042370625.1	PRJNA1175697	SAMN02746077	JBBPEI000000000.1	reference genome	1149848	1149786	Thermothelomyces heterothallicus CBS 202.75	strain=CBS 202.75	na	latest	Scaffold	Major	Full	2024-09-19	Mychet1	DOE Joint Genome Institute	GCA_042370625.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/042/370/625/GCF_042370625.1_Mychet1	na	na	na	haploid	fungi	35440081	35359612	53.000000	0	86	468	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-10-23	9400	9216	184	39266695
GCF_010094145.1	PRJNA625768	SAMN02745736	VOSY00000000.1	reference genome	1150837	100019	Didymella exigua CBS 183.55	strain=CBS 183.55	na	latest	Scaffold	Major	Full	2020-01-31	Didex1	DOE Joint Genome Institute	GCA_010094145.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/094/145/GCF_010094145.1_Didex1	na	assembly designated as neotype	na	haploid	fungi	34389227	33658318	53.000000	0	176	1010	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2020-04-21	12508	12355	124	na
GCF_045866475.1	PRJNA1216027	SAMD00817542	BAAFSV000000000.1	reference genome	1157608	1157608	Madurella fahalii	strain=IFM 68171	na	latest	Contig	Major	Full	2024-09-15	ASM4586647v1	Medical Mycology Research Center, Chiba University	GCA_045866475.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/045/866/475/GCF_045866475.1_ASM4586647v1	na	na	na	haploid	fungi	40045822	40045822	54.500000	0	6	6	Medical Mycology Research Center, Chiba University	Annotation submitted by Medical Mycology Research Center, Chiba University	2025-01-31	11573	11331	242	na
GCF_000687475.1	PRJNA756324	SAMN02693461	na	reference genome	1159556	1159556	Ustilaginoidea virens	strain=UV-8b	na	latest	Complete Genome	Major	Full	2021-05-20	ASM68747v2	China Agricultural University	GCA_000687475.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/687/475/GCF_000687475.1_ASM68747v2	na	na	na	haploid	fungi	37060086	37060086	50.000000	7	7	7	China Agricultural University	Annotation submitted by China Agricultural University	2021-11-23	8297	8297	0	na
GCF_001890805.1	PRJNA395483	SAMN02194406	LSTL00000000.1	reference genome	1160497	41413	Aspergillus glaucus CBS 516.65	strain=CBS 516.65	na	latest	Scaffold	Major	Full	2016-12-08	Aspgl1	DOE Joint Genome Institute	GCA_001890805.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/890/805/GCF_001890805.1_Aspgl1	na	assembly designated as neotype	na	haploid	fungi	27993362	27781411	49.500000	0	82	433	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-21	11428	11253	172	na
GCF_028828045.1	PRJNA973687	SAMN30185360	JAQJAR000000000.1	reference genome	1167516	1167516	Penicillium odoratum	strain=IBT 22623	na	latest	Contig	Major	Full	2023-02-23	ASM2882804v1	Aalborg University	GCA_028828045.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/828/045/GCF_028828045.1_ASM2882804v1	na	na	na	haploid	fungi	32405987	32405987	48.000000	0	7	7	Aalborg University	Annotation submitted by Aalborg University	2023-06-12	12001	12000	0	36726175
GCF_000281105.1	PRJNA245130	SAMN00989094	AJKL00000000.1	reference genome	1168221	61459	Coniosporium apollinis CBS 100218	strain=CBS 100218	na	latest	Scaffold	Major	Full	2012-07-31	Coni_apol_CBS100218 _V1	Broad Institute	GCA_000281105.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/281/105/GCF_000281105.1_Coni_apol_CBS100218_V1	na	na	na	haploid	fungi	28645321	28506104	52.000000	0	169	241	Broad Institute	Annotation submitted by Broad Institute	2024-01-02	9367	9308	55	na
GCF_010015615.1	PRJNA722002	SAMN02691713	JAADKF000000000.1	reference genome	1168544	45142	Cucurbitaria berberidis CBS 394.84	strain=CBS 394.84	na	latest	Scaffold	Major	Full	2020-01-29	Cucbe1	DOE Joint Genome Institute	GCA_010015615.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/015/615/GCF_010015615.1_Cucbe1	na	na	na	haploid	fungi	32905402	32792628	49.500000	0	42	184	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2021-04-20	12468	12384	73	na
GCF_033439665.1	PRJNA1072700	SAMN06297072	JAUDZG000000000.1	reference genome	1170767	1170767	Chaetomium strumarium	strain=CBS 333.67	na	latest	Contig	Major	Full	2023-11-08	Achstr1	DOE Joint Genome Institute	GCA_033439665.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/033/439/665/GCF_033439665.1_Achstr1	na	assembly from type material	na	haploid	fungi	32422668	32422668	55.500000	0	8	8	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-02-06	10401	10185	204	37820761
GCF_003444635.1	PRJNA801197	SAMN09514284	QOKS00000000.1	reference genome	1174673	1174673	Morchella importuna	strain=M04M26	na	latest	Scaffold	Major	Full	2018-09-04	ASM344463v2	Huazhong Agricultural University	GCA_003444635.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/444/635/GCF_003444635.1_ASM344463v2	na	na	na	haploid	fungi	50927171	50910602	47.500000	0	105	105	Huazhong Agricultural University	Annotation submitted by Huazhong Agricultural University	2022-01-28	11642	11642	0	30149649
GCF_020137385.1	PRJNA774199	SAMN15763238	JACLAE000000000.1	reference genome	1174677	1174677	Morchella sextelata	strain=SCLS	na	latest	Contig	Major	Full	2021-09-24	ASM2013738v1	Northwest A&F University	GCA_020137385.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/137/385/GCF_020137385.1_ASM2013738v1	na	na	na	haploid	fungi	53569587	53569587	47.500000	0	42	42	Northwest A&F University	Annotation submitted by Northwest A&F University	2021-11-23	13182	13182	0	na
GCF_010093885.1	PRJNA625763	SAMN02745735	JAAEIQ000000000.1	reference genome	1176127	462254	Aplosporella prunicola CBS 121167	strain=CBS 121167	na	latest	Scaffold	Major	Full	2020-01-31	Aplpr1	DOE Joint Genome Institute	GCA_010093885.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/093/885/GCF_010093885.1_Aplpr1	na	assembly from type material	na	haploid	fungi	32818685	32468423	54.500000	0	334	763	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2020-04-21	12738	12531	167	na
GCF_000280035.1	PRJNA215743	SAMN03081437	na	reference genome	1178016	571949	Encephalitozoon romaleae SJ-2008	strain=SJ-2008	na	latest	Chromosome	Major	Full	2012-07-19	ASM28003v2	University of Ottawa	GCA_000280035.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/280/035/GCF_000280035.1_ASM28003v2	na	na	na	haploid	fungi	2187595	2187595	40.500000	11	13	13	University of Ottawa	Annotation submitted by University of Ottawa	2017-06-02	1883	1831	51	22802648
GCF_000585585.1	PRJNA245124	SAMN00974099	AMWN00000000.1	reference genome	1182541	43229	Capronia coronata CBS 617.96	strain=CBS 617.96	na	latest	Scaffold	Major	Full	2014-03-05	Capr_coro_CBS_617_96_V1	Broad Institute	GCA_000585585.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/585/585/GCF_000585585.1_Capr_coro_CBS_617_96_V1	na	assembly from type material	na	haploid	fungi	25807613	25800341	53.000000	0	11	11	Broad Institute	Annotation submitted by Broad Institute	2024-01-05	9231	9231	0	na
GCF_000585565.1	PRJNA245125	SAMN00974100	AMGY00000000.1	reference genome	1182542	43228	Capronia epimyces CBS 606.96	strain=CBS 606.96	na	latest	Scaffold	Major	Full	2014-03-05	Capr_epim_CBS_606_96_V1	Broad Institute	GCA_000585565.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/585/565/GCF_000585565.1_Capr_epim_CBS_606_96_V1	na	na	na	haploid	fungi	28889638	28761473	53.500000	0	18	18	Broad Institute	Annotation submitted by Broad Institute	2024-01-05	10468	10468	0	na
GCF_000585535.1	PRJNA245127	SAMN00974101	AMGX00000000.1	reference genome	1182543	1182553	Cladophialophora psammophila CBS 110553	strain=CBS 110553	na	latest	Scaffold	Major	Full	2014-03-05	Clad_psam_CBS_110553_V1	Broad Institute	GCA_000585535.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/585/535/GCF_000585535.1_Clad_psam_CBS_110553_V1	na	assembly from type material	na	haploid	fungi	39420127	39333014	50.500000	0	123	123	Broad Institute	Annotation submitted by Broad Institute	2024-01-05	13421	13421	0	na
GCF_000585515.1	PRJNA245128	SAMN00974102	AMGW00000000.1	reference genome	1182544	470704	Cladophialophora yegresii CBS 114405	strain=CBS 114405	na	latest	Scaffold	Major	Full	2014-03-05	Clad_yegr_CBS_114405_V1	Broad Institute	GCA_000585515.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/585/515/GCF_000585515.1_Clad_yegr_CBS_114405_V1	na	assembly from type material	na	haploid	fungi	27898422	27887733	54.000000	0	8	8	Broad Institute	Annotation submitted by Broad Institute	2024-01-05	10118	10118	0	na
GCF_000709125.1	PRJNA292601	SAMN00974103	AMGV00000000.1	reference genome	1182545	1033840	Exophiala aquamarina CBS 119918	strain=CBS 119918	na	latest	Scaffold	Major	Full	2014-06-16	Exop_aqua_CBS_119918_V1	Broad Institute	GCA_000709125.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/125/GCF_000709125.1_Exop_aqua_CBS_119918_V1	na	assembly from type material	na	haploid	fungi	41566958	40982715	49.000000	0	151	151	Broad Institute	Annotation submitted by Broad Institute	2024-01-05	13118	13118	0	na
GCF_000293215.1	PRJNA296794	SAMN02981437	ALBS00000000.1	reference genome	1186058	82508	Trichosporon asahii var. asahii CBS 2479	strain=CBS 2479	na	latest	Scaffold	Major	Full	2013-01-23	Trichosporon asahii 1	Beijing Military Command General Hospital of PLA, China	GCA_000293215.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/293/215/GCF_000293215.1_Trichosporon_asahii_1	na	assembly from type material	na	haploid	fungi	24507743	24271266	59.500000	0	77	341	Beijing Military Command General Hospital of PLA, China	Annotation submitted by Beijing Military Command General Hospital of PLA, China	2024-01-02	8834	8311	523	14641628;23104369
GCF_013036055.1	PRJNA691329	SAMN13783390	JAAABM000000000.1	reference genome	1187904	1187904	Alternaria burnsii	strain=CBS107.38	na	latest	Scaffold	Major	Full	2020-05-11	ASM1303605v1	Northwest A&F University	GCA_013036055.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/036/055/GCF_013036055.1_ASM1303605v1	na	assembly from type material	na	haploid	fungi	32958128	32957603	51.000000	0	67	67	Northwest A&F University	Annotation submitted by Northwest A&F University	2021-02-12	11314	11314	0	na
GCF_023758085.1	PRJNA858129	SAMN18144517	JAFVLR000000000.1	reference genome	1187925	1187925	Alternaria hordeiaustralica	strain=BMP 2776	na	latest	Scaffold	Major	Full	2022-06-17	ASM2375808v1	Cornell University	GCA_023758085.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/758/085/GCF_023758085.1_ASM2375808v1	na	assembly from type material	na	haploid	fungi	36958049	36957753	50.000000	0	188	188	Cornell University	Annotation submitted by Cornell University	2022-07-15	11145	11036	109	na
GCF_024043165.1	PRJNA858129	SAMN18144508	JAFVMA000000000.1	reference genome	1187928	1187928	Alternaria incomplexa	strain=BMP 0042	na	latest	Scaffold	Major	Full	2022-06-29	ASM2404316v1	Cornell University	GCA_024043165.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/043/165/GCF_024043165.1_ASM2404316v1	na	assembly from type material	na	haploid	fungi	33457300	33457154	52.500000	0	91	91	Cornell University	Annotation submitted by Cornell University	2022-11-01	11090	10979	111	na
GCF_024291825.1	PRJNA858129	SAMN18144516	JAFVLS000000000.1	reference genome	1187938	1187938	Alternaria postmessia	strain=BMP 2775	na	latest	Scaffold	Major	Full	2022-07-15	ASM2429182v1	Cornell University	GCA_024291825.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/291/825/GCF_024291825.1_ASM2429182v1	na	assembly from type material	na	haploid	fungi	34409470	34407079	51.000000	0	708	708	Cornell University	Annotation submitted by Cornell University	2022-11-03	11767	11632	135	na
GCF_020736505.1	PRJNA801206	SAMN05878025	JAHBNI000000000.1	reference genome	1187941	1187941	Alternaria rosae	strain=MPI-PUGE-AT-0040	na	latest	Contig	Major	Full	2021-11-02	Altro1	DOE Joint Genome Institute	GCA_020736505.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/736/505/GCF_020736505.1_Altro1	na	na	na	haploid	fungi	33831682	33831682	52.000000	0	52	52	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-01-28	12727	12640	80	na
GCF_023758065.1	PRJNA858129	SAMN18144513	JAFVLV000000000.1	reference genome	1187951	1187951	Alternaria ventricosa	strain=BMP 2768	na	latest	Scaffold	Major	Full	2022-06-17	ASM2375806v1	Cornell University	GCA_023758065.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/758/065/GCF_023758065.1_ASM2375806v1	na	assembly from type material	na	haploid	fungi	34687354	34687246	51.500000	0	89	89	Cornell University	Annotation submitted by Cornell University	2022-07-15	11061	10954	107	na
GCF_001896365.1	PRJNA721996	SAMN05751675	MIKG00000000.1	reference genome	1196081	1196081	Talaromyces amestolkiae	strain=CIB	na	latest	Scaffold	Major	Full	2016-12-09	ASM189636v1	Centro de Investigaciones Biologicas	GCA_001896365.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/896/365/GCF_001896365.1_ASM189636v1	na	na	na	haploid	fungi	33721883	33714149	46.500000	0	212	212	Centro de Investigaciones Biologicas	Annotation submitted by Centro de Investigaciones Biologicas	2021-04-20	10404	10403	0	28649280
GCF_024610275.1	PRJNA895880	SAMN19021057	JAIHNG000000000.1	reference genome	1198502	1198502	Candida theae	strain=CBS 12239	na	latest	Scaffold	Major	Full	2022-08-10	ASM2461027v1	Barcelona Supercomputing Center	GCA_024610275.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/610/275/GCF_024610275.1_ASM2461027v1	na	assembly from type material	na	haploid	fungi	12421729	12396429	40.500000	0	178	178	Barcelona Supercomputing Center	Annotation submitted by Barcelona Supercomputing Center	2022-11-03	5432	5385	26	35438177
GCF_030867565.1	PRJNA1032065	SAMN05949355	MOOE00000000.1	reference genome	1209916	1209916	Colletotrichum costaricense	strain=IMI 309622	na	latest	Scaffold	Major	Full	2023-08-24	CCOSS01	University of Western Brittany	GCA_030867565.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/867/565/GCF_030867565.1_CCOSS01	na	na	na	haploid	fungi	51625248	51623800	51.500000	0	70	70	University of Western Brittany	Annotation submitted by University of Western Brittany	2023-10-30	17065	17065	0	na
GCF_030913485.1	PRJNA1032071	SAMN05446267	JAHMHR000000000.1	reference genome	1209918	1209918	Colletotrichum godetiae	strain=CBS 193.32	na	latest	Contig	Major	Full	2023-08-24	Colgo1	DOE Joint Genome Institute	GCA_030913485.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/913/485/GCF_030913485.1_Colgo1	na	na	na	haploid	fungi	51652851	51652851	52.000000	0	194	194	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2023-10-30	16406	16071	331	na
GCF_001831195.1	PRJNA411788	SAMN05771038	MJBS00000000.1	reference genome	1209926	1209926	Colletotrichum orchidophilum	strain=IMI 309357	na	latest	Scaffold	Major	Full	2016-10-21	CORC01	University of Western Brittany	GCA_001831195.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/831/195/GCF_001831195.1_CORC01	na	na	na	haploid	fungi	48556462	48552182	51.000000	0	321	321	University of Western Brittany	Annotation submitted by University of Western Brittany	2022-02-25	14452	14452	0	na
GCF_011075155.1	PRJNA645151	SAMN14073982	JAAJBS000000000.1	reference genome	1209932	1209932	Colletotrichum scovillei	strain=TJNH1	na	latest	Contig	Major	Full	2020-03-09	ASM1107515v1	Tianjin Institute of Plant Protection	GCA_011075155.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/075/155/GCF_011075155.1_ASM1107515v1	na	na	na	haploid	fungi	52001227	52001227	52.000000	0	15	15	Tianjin Institute of Plant Protection	Annotation submitted by Tianjin Institute of Plant Protection	2022-03-05	13459	13419	0	33006530
GCF_030869305.1	PRJNA1032069	SAMN05913735	MLFU00000000.1	reference genome	1209934	1209934	Colletotrichum tamarilloi	strain=Tom-12	na	latest	Scaffold	Major	Full	2023-08-24	CTAM01	University of Western Brittany	GCA_030869305.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/869/305/GCF_030869305.1_CTAM01	na	na	na	haploid	fungi	52071711	52070624	51.000000	0	603	603	University of Western Brittany	Annotation submitted by University of Western Brittany	2023-10-30	17330	17330	0	na
GCF_000319635.2	PRJNA225509	SAMN02981487	ANPB00000000.2	reference genome	1213859	690256	Colletotrichum fructicola Nara gc5	strain=Nara gc5	na	latest	Contig	Major	Full	2020-05-12	ASM31963v2	RIKEN Plant Science Center	GCA_000319635.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/319/635/GCF_000319635.2_ASM31963v2	na	na	na	haploid	fungi	59542867	59542867	53.000000	0	12	12	RIKEN Plant Science Center	Annotation submitted by RIKEN Plant Science Center	2024-06-26	17388	17388	0	na
GCF_026229845.1	PRJNA926499	SAMN18524398	JAJATV000000000.1	reference genome	1214568	1214568	Diaporthe amygdali	strain=CAA958	na	latest	Scaffold	Major	Full	2022-11-17	ASM2622984v1	Universidade de Aveiro	GCA_026229845.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/229/845/GCF_026229845.1_ASM2622984v1	na	na	na	haploid	fungi	51483502	51483018	52.000000	0	267	267	Universidade de Aveiro	Annotation submitted by Universidade de Aveiro	2023-01-27	15635	15635	0	na
GCF_013390185.1	PRJNA670752	SAMN09531619	QPNB00000000.1	reference genome	1215731	1215731	Colletotrichum aenigma	strain=Cg56	na	latest	Contig	Major	Full	2020-07-06	ASM1339018v1	RIKEN	GCA_013390185.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/390/185/GCF_013390185.1_ASM1339018v1	na	na	na	haploid	fungi	59189926	59189926	52.500000	0	79	79	RIKEN	Annotation submitted by RIKEN	2022-02-28	15190	15190	0	na
GCF_003426965.1	PRJNA625766	SAMN09761659	QUQM00000000.1	reference genome	1220188	1220188	Aspergillus tanneri	strain=NIH1004	na	latest	Contig	Major	Full	2018-08-24	ASM342696v1	JCVI	GCA_003426965.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/426/965/GCF_003426965.1_ASM342696v1	na	assembly from type material	na	haploid	fungi	38719388	38719388	47.500000	0	14	14	JCVI	Annotation submitted by JCVI	2025-02-22	11845	11682	163	na
GCF_016861865.1	PRJNA728012	SAMD00269938	na	reference genome	1220207	1220207	Aspergillus puulaauensis	strain=MK2	na	latest	Complete Genome	Major	Full	2021-01-30	ApuulaauensisMK2_assembly01	Fermentation Microbiology, Education and Research Center for Fermentation Studies, Faculty of Agriculture, Kagoshima University	GCA_016861865.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/861/865/GCF_016861865.1_ApuulaauensisMK2_assembly01	na	na	na	haploid	fungi	34318862	34318862	50.000000	8	8	8	Fermentation Microbiology, Education and Research Center for Fermentation Studies, Faculty of Agriculture, Kagoshima University	Annotation submitted by Fermentation Microbiology, Education and Research Center for Fermentation Studies, Faculty of Agriculture, Kagoshima University	2025-02-22	13748	13605	143	na
GCF_000365145.1	PRJNA245131	SAMN02981492	AOBU00000000.1	reference genome	1220924	293227	Cyphellophora europaea CBS 101466	strain=CBS 101466	na	latest	Scaffold	Major	Full	2013-12-11	Phia_euro_CBS_101466_V1	Broad Institute	GCA_000365145.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/365/145/GCF_000365145.1_Phia_euro_CBS_101466_V1	na	assembly from type material	na	haploid	fungi	28781303	28719617	54.000000	0	19	106	Broad Institute	Annotation submitted by Broad Institute	2024-01-04	11153	11094	58	na
GCF_900067095.1	PRJNA576857	SAMEA3862493	FJOF00000000.1	reference genome	1227346	948311	Fusarium proliferatum ET1	strain=ET1	na	latest	Scaffold	Major	Full	2016-12-06	F. proliferatum ET1 version 1	Institute of Bioinformatics and Systems Biology	GCA_900067095.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/067/095/GCF_900067095.1_F._proliferatum_ET1_version_1	na	na	na	haploid	fungi	45210324	44903268	48.500000	0	32	32	Institute of Bioinformatics and Systems Biology	Annotation submitted by Institute of Bioinformatics and Systems Biology	2023-12-28	16488	16129	359	na
GCF_000516985.1	PRJNA245144	SAMN02369365	ARNU00000000.1	reference genome	1229662	393283	Pestalotiopsis fici W106-1	strain=W106-1	na	latest	Scaffold	Major	Full	2014-01-10	PFICI	Institute of microbiology, chinese academy of sciences	GCA_000516985.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/516/985/GCF_000516985.1_PFICI	na	na	na	haploid	fungi	51910726	51862826	48.500000	0	39	518	Institute of microbiology, chinese academy of sciences	Annotation submitted by Institute of microbiology, chinese academy of sciences	2024-01-05	15413	15413	0	25623211
GCF_000349305.1	PRJNA264005	SAMEA2271934	CANK00000000.1	reference genome	1230383	76777	Malassezia sympodialis ATCC 42132	strain=ATCC 42132	na	latest	Scaffold	Major	Full	2013-03-18	ASM34930v2	SciLifeLab	GCA_000349305.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/349/305/GCF_000349305.1_ASM34930v2	na	na	na	haploid	fungi	7669689	7654697	59.000000	0	65	88	SciLifeLab	Annotation submitted by SciLifeLab	2024-01-02	3517	3318	0	na
GCF_002926085.2	PRJNA479899	SAMN08161465	PKFP00000000.1	reference genome	1231522	1231522	Candidozyma duobushaemuli	strain=B09383	na	latest	Contig	Minor	Full	2018-02-13	CanDuoHae_v1.0	Centers for Disease Control and Prevention	GCA_002926085.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/926/085/GCF_002926085.2_CanDuoHae_v1.0	na	na	na	haploid	fungi	12557957	12557957	47.000000	0	7	7	Centers for Disease Control and Prevention	Annotation submitted by Centers for Disease Control and Prevention	2019-05-31	5329	5173	154	30559369
GCF_000938715.1	PRJNA413304	SAMEA3170909	CDLU00000000.1	reference genome	1245769	1245769	Lachancea lanzarotensis	strain=CBS 12615	na	latest	Scaffold	Major	Full	2015-01-21	LALA0	INRA UMR 1319	GCA_000938715.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/938/715/GCF_000938715.1_LALA0	na	assembly from type material	na	haploid	fungi	11092131	11091689	44.500000	0	24	34	INRA UMR 1319	Annotation submitted by INRA UMR 1319	2025-07-15	5317	5055	204	na
GCF_000464535.1	PRJNA245134	SAMN02981524	APWS00000000.1	reference genome	1263415	364733	Endocarpon pusillum Z07020	strain=Z07020	na	latest	Scaffold	Major	Full	2013-09-05	EPUS	chinese academy of science	GCA_000464535.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/464/535/GCF_000464535.1_EPUS	na	na	na	haploid	fungi	37130611	36775460	46.000000	0	908	1731	chinese academy of science	Annotation submitted by chinese academy of science	2024-01-04	9238	9238	0	24438332
GCF_036426115.1	PRJNA1105964	SAMN02086248	na	reference genome	1268659	1268659	Kwoniella botswanensis	strain=CBS 12716	na	latest	Complete Genome	Major	Full	2024-02-07	ASM3642611v1	Broad Institute	GCA_036426115.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/036/426/115/GCF_036426115.1_ASM3642611v1	na	assembly from type material	na	haploid	fungi	23007246	23007246	45.000000	3	3	3	Broad Institute	Annotation submitted by Broad Institute	2024-05-01	8705	8614	59	na
GCF_000417875.1	PRJNA245148	SAMN02981510	AOUS00000000.1	reference genome	1277687	84751	Pseudozyma flocculosa PF-1	strain=PF-1	na	latest	Scaffold	Major	Full	2013-07-08	Pflocc_1.0	Université Laval	GCA_000417875.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/417/875/GCF_000417875.1_Pflocc_1.0	na	na	na	haploid	fungi	23305380	22963743	65.500000	0	39	1104	Université Laval	Annotation submitted by Université Laval	2021-12-10	6877	6877	0	23800965
GCF_000365165.1	PRJNA245126	SAMN01919308	AOFF00000000.1	reference genome	1279043	86049	Cladophialophora carrionii CBS 160.54	strain=CBS 160.54	na	latest	Scaffold	Major	Full	2013-12-11	Clad_carr_CBS_160_54_V1	Broad Institute	GCA_000365165.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/365/165/GCF_000365165.1_Clad_carr_CBS_160_54_V1	na	assembly from type material	na	haploid	fungi	28991111	28979941	54.500000	0	19	102	Broad Institute	Annotation submitted by Broad Institute	2024-01-05	10428	10373	47	na
GCF_900079805.1	PRJNA322155	SAMEA3724789	na	reference genome	1279085	5127	Fusarium fujikuroi IMI 58289	strain=IMI 58289	na	latest	Chromosome	Major	Full	2013-08-20	Fusarium_fujikuroi_IMI58289_V2	HMGU-IBIS	GCA_900079805.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/079/805/GCF_900079805.1_Fusarium_fujikuroi_IMI58289_V2	na	na	na	haploid	fungi	43832314	43807861	47.500000	12	12	12	HMGU-IBIS	Annotation submitted by HMGU-IBIS	2018-02-08	14943	14810	133	23825955
GCF_003144205.1	PRJNA479903	SAMN02787052	MCHC00000000.1	reference genome	1280837	1280837	Meira miltonrushii	strain=MCA 3882	na	latest	Scaffold	Major	Full	2018-05-21	Meimi1	DOE Joint Genome Institute	GCA_003144205.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/144/205/GCF_003144205.1_Meimi1	na	assembly from type material	na	haploid	fungi	17383515	17279528	43.000000	0	32	136	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2020-02-10	7485	7444	40	29771364
GCF_000392275.1	PRJNA245153	SAMN01908518	AORD00000000.1	reference genome	1286976	223192	Phaeoacremonium minimum UCRPA7	strain=UCRPA7	na	latest	Scaffold	Major	Full	2013-05-16	UCRPA7V03	UC Davis	GCA_000392275.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/392/275/GCF_000392275.1_UCRPA7V03	na	na	na	haploid	fungi	47465449	47381958	49.500000	0	624	1278	UC Davis	Annotation submitted by UC Davis	2017-07-12	8834	8834	0	23814032
GCF_001720155.1	PRJNA352843	SAMN02086247	AWGH00000000.1	reference genome	1295528	5619	Cryptococcus wingfieldii CBS 7118	strain=CBS 7118	na	latest	Scaffold	Major	Full	2016-09-06	Tsuc_wing_CBS7118_V1	Broad Institute	GCA_001720155.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/720/155/GCF_001720155.1_Tsuc_wing_CBS7118_V1	na	assembly from type material	na	haploid	fungi	19969799	19893900	53.500000	0	83	83	Broad Institute	Annotation submitted by Broad Institute	2017-08-28	8314	8094	220	na
GCF_001720195.1	PRJNA1105951	SAMN02086252	na	reference genome	1295531	5208	Cryptococcus depauperatus CBS 7841	strain=CBS 7841	na	latest	Complete Genome	Major	Full	2024-07-02	ASM172019v2	Broad Institute	GCA_001720195.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/720/195/GCF_001720195.1_ASM172019v2	na	assembly from heterotypic synonym type material	na	haploid	fungi	16179376	16179376	45.000000	8	8	8	Broad Institute	Annotation submitted by Broad Institute	2024-07-02	6455	6341	67	35713948
GCF_001720205.1	PRJNA352837	SAMN02086251	AWGJ00000000.1	reference genome	1295533	104669	Cryptococcus amylolentus CBS 6039	strain=CBS 6039	na	latest	Scaffold	Major	Full	2016-09-06	Cryp_amyl_CBS6039_V3	Broad Institute	GCA_001720205.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/720/205/GCF_001720205.1_Cryp_amyl_CBS6039_V3	na	assembly from type material	na	haploid	fungi	20254996	20253913	53.500000	0	15	15	Broad Institute	Annotation submitted by Broad Institute	2017-08-28	8503	8249	248	na
GCF_036810415.1	PRJNA1105966	SAMN02086250	na	reference genome	1295534	4975	Kwoniella dendrophila CBS 6074	strain=CBS 6074	na	latest	Complete Genome	Major	Full	2024-07-02	ASM3681041v1	Broad Institute	GCA_036810415.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/036/810/415/GCF_036810415.1_ASM3681041v1	na	assembly from type material	na	haploid	fungi	23026020	23026020	38.500000	11	11	11	Broad Institute	Annotation submitted by Broad Institute	2024-07-02	8131	8023	60	na
GCF_000512605.2	PRJNA352840	SAMN01932741	na	reference genome	1296096	453459	Kwoniella pini CBS 10737	strain=CBS 10737	na	latest	Complete Genome	Major	Full	2024-12-07	ASM51260v3	Broad Institute	GCA_000512605.3	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/512/605/GCF_000512605.2_ASM51260v3	na	assembly from type material	na	haploid	fungi	20887338	20887338	40.500000	11	11	11	Broad Institute	Annotation submitted by Broad Institute	2024-12-07	7877	7809	47	na
GCF_000512585.2	PRJNA352838	SAMN01932836	na	reference genome	1296100	324769	Kwoniella bestiolae CBS 10118	strain=CBS 10118	na	latest	Complete Genome	Major	Full	2024-06-21	ASM51258v3	Broad Institute	GCA_000512585.3	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/512/585/GCF_000512585.2_ASM51258v3	na	assembly from type material	na	haploid	fungi	24551665	24551665	47.500000	8	8	8	Broad Institute	Annotation submitted by Broad Institute	2024-06-21	9214	9111	64	na
GCF_000835755.1	PRJNA1140275	SAMN01932842	ATAM00000000.2	reference genome	1296105	1859121	Cryptococcus tetragattii IND107	strain=IND107	na	latest	Chromosome	Major	Full	2024-06-25	ASM83575v2	Broad Institute	GCA_000835755.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/835/755/GCF_000835755.1_ASM83575v2	na	na	na	haploid	fungi	17799622	17799622	48.000000	14	15	15	Broad Institute	Annotation submitted by Broad Institute	2024-07-31	6807	6646	92	na
GCF_000836335.1	PRJNA1140281	SAMN01932846	na	reference genome	1296109	552467	Cryptococcus bacillisporus CA1280	strain=CA1280	na	latest	Complete Genome	Major	Full	2024-07-31	ASM83633v2	Broad Institute	GCA_000836335.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/836/335/GCF_000836335.1_ASM83633v2	na	na	na	haploid	fungi	17825526	17825526	48.000000	14	14	14	Broad Institute	Annotation submitted by Broad Institute	2024-07-31	6809	6694	57	na
GCF_000512565.2	PRJNA342698	SAMN01932837	na	reference genome	1296121	324770	Kwoniella dejecticola CBS 10117	strain=CBS 10117	na	latest	Complete Genome	Major	Full	2024-06-24	ASM51256v3	Broad Institute	GCA_000512565.3	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/512/565/GCF_000512565.2_ASM51256v3	na	assembly from type material	na	haploid	fungi	23932770	23932770	48.500000	11	11	11	Broad Institute	Annotation submitted by Broad Institute	2024-06-24	8719	8632	64	na
GCF_000507465.2	PRJNA352839	SAMN01932738	ASQE00000000.2	reference genome	1296122	463800	Kwoniella mangroviensis CBS 8507	strain=CBS 8507	na	latest	Chromosome	Major	Full	2024-03-14	ASM50746v4	Broad Institute	GCA_000507465.4	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/507/465/GCF_000507465.2_ASM50746v4	na	assembly from type material	na	haploid	fungi	22796923	22796923	45.000000	3	4	4	Broad Institute	Annotation submitted by Broad Institute	2024-05-28	8610	8516	65	38234769
GCF_000400465.1	PRJNA215734	SAMN02981518	APLC00000000.1	reference genome	1299270	245174	Wallemia ichthyophaga EXF-994	strain=EXF-994	na	latest	Scaffold	Major	Full	2013-05-20	Wallemia ichthyophaga version 1.0	BGI	GCA_000400465.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/400/465/GCF_000400465.1_Wallemia_ichthyophaga_version_1.0	na	assembly designated as neotype	na	haploid	fungi	9655632	9624672	45.500000	0	82	101	BGI	Annotation submitted by BGI	2023-09-15	5000	4863	127	24034603
GCF_036884685.1	PRJNA1105971	SAMN37367316	JAXBLS000000000.1	reference genome	1304137	1304137	Scheffersomyces xylosifermentans	strain=CBS 12540	na	latest	Contig	Major	Full	2024-02-27	Schxyl1	DOE Joint Genome Institute	GCA_036884685.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/036/884/685/GCF_036884685.1_Schxyl1	na	assembly from type material	na	haploid	fungi	17250428	17250428	40.000000	0	11	11	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-05-01	6350	6180	170	38321504
GCF_000403515.1	PRJNA264001	SAMD00002584	BAOW00000000.1	reference genome	1305764	327079	Pseudozyma hubeiensis SY62	strain=SY62	na	latest	Scaffold	Major	Full	2013-05-16	ASM40351v1	Kitami Institute of Technology	GCA_000403515.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/403/515/GCF_000403515.1_ASM40351v1	na	na	na	haploid	fungi	18442938	18435583	56.500000	0	74	160	NCBI RefSeq	Annotation submitted by NCBI RefSeq	2015-04-20	7619	7472	147	23814110
GCF_025399195.1	PRJNA895890	SAMN02745731	JAHLTX000000000.1	reference genome	1314678	41833	Umbelopsis ramanniana AG	strain=AG	na	latest	Scaffold	Major	Full	2022-09-23	Umbra1	DOE Joint Genome Institute	GCA_025399195.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/399/195/GCF_025399195.1_Umbra1	na	na	na	haploid	fungi	23077072	23060122	43.000000	0	198	239	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-11-01	10039	9915	122	36037379
GCF_003711515.1	PRJNA531015	SAMN02745840	NITX00000000.1	reference genome	1314773	1302862	Sodiomyces alkalinus F11	strain=F11	na	latest	Scaffold	Major	Full	2018-11-05	Sodal1	DOE Joint Genome Institute	GCA_003711515.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/711/515/GCF_003711515.1_Sodal1	na	assembly from type material	na	haploid	fungi	43450096	43138642	49.000000	0	29	611	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2019-04-05	9625	9403	191	30368956
GCF_001632365.1	PRJNA721992	SAMN02745959	LOAX00000000.1	reference genome	1314785	5630	Laetiporus sulphureus 93-53	strain=93-53	na	latest	Scaffold	Major	Full	2016-04-27	Laesu1	DOE Joint Genome Institute	GCA_001632365.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/632/365/GCF_001632365.1_Laesu1	na	na	na	haploid	fungi	39909705	39034642	51.500000	0	399	1203	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2021-04-20	13840	13739	100	26659563
GCF_010015565.1	PRJNA625769	SAMN02745884	JAADKD000000000.1	reference genome	1314786	112489	Dissoconium aciculare CBS 342.82	strain=CBS 342.82	na	latest	Scaffold	Major	Full	2020-01-29	Disac1	DOE Joint Genome Institute	GCA_010015565.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/015/565/GCF_010015565.1_Disac1	na	assembly from type material	na	haploid	fungi	26537235	26333418	52.500000	0	54	232	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2020-04-21	10366	10293	70	na
GCF_028828155.1	PRJNA973687	SAMN30185375	JAQKAJ000000000.1	reference genome	1316194	1316194	Penicillium subrubescens	strain=IBT 31985	na	latest	Contig	Major	Full	2023-02-23	ASM2882815v1	Aalborg University	GCA_028828155.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/828/155/GCF_028828155.1_ASM2882815v1	na	assembly from type material	na	haploid	fungi	39968067	39968067	49.000000	0	14	14	Aalborg University	Annotation submitted by Aalborg University	2023-06-12	13458	13458	0	36726175
GCF_007821495.1	PRJNA576247	SAMN08668878	QGMH00000000.1	reference genome	1316788	1316788	Lachnellula hyalina	strain=CBS 185.66	na	latest	Contig	Major	Full	2019-08-01	CFIA_Lhya_EG2017	Canadian Food Inspection Agency (CFIA)	GCA_007821495.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/821/495/GCF_007821495.1_CFIA_Lhya_EG2017	na	assembly from type material	na	haploid	fungi	33828344	33828344	47.000000	0	685	685	Canadian Food Inspection Agency (CFIA)	Annotation submitted by Canadian Food Inspection Agency (CFIA)	2019-10-09	9248	9157	82	na
GCF_028827825.1	PRJNA973687	SAMN30185353	JAQJAO000000000.1	reference genome	1324776	1324776	Penicillium malachiteum	strain=IBT 17515	na	latest	Contig	Major	Full	2023-02-23	ASM2882782v1	Aalborg University	GCA_028827825.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/827/825/GCF_028827825.1_ASM2882782v1	na	assembly from type material	na	haploid	fungi	35880773	35880773	46.500000	0	6	6	Aalborg University	Annotation submitted by Aalborg University	2023-06-14	13213	13212	0	36726175
GCF_025433545.1	PRJNA925113	SAMN26804628	JANGXZ000000000.1	reference genome	1328300	1328300	Fusarium keratoplasticum	na	Fu6.1	latest	Chromosome	Major	Full	2022-10-03	ASM2543354v1	Academia Sinica	GCA_025433545.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/433/545/GCF_025433545.1_ASM2543354v1	na	na	na	haploid	fungi	49462855	49462855	51.000000	15	25	25	Academia Sinica	Annotation submitted by Academia Sinica	2023-01-27	14934	14423	0	36266645
GCF_003813185.1	PRJNA1151046	SAMN02744685	QKKD00000000.1	reference genome	1328758	5365	Lentinus tigrinus ALCF2SS1-7	strain=ALCF2SS1-7	na	latest	Scaffold	Major	Full	2018-11-21	Lenti7_1	DOE Joint Genome Institute	GCA_003813185.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/813/185/GCF_003813185.1_Lenti7_1	na	na	na	haploid	fungi	39530113	39175507	56.000000	0	207	503	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-09-04	15665	15364	290	na
GCF_001619985.1	PRJNA342690	SAMN02744854	JXCS00000000.1	reference genome	1328760	1217826	Xylona heveae TC161	strain=TC161	na	latest	Scaffold	Major	Full	2016-04-14	Xylona heveae TC161 v1.0	DOE Joint Genome Institute	GCA_001619985.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/619/985/GCF_001619985.1_Xylona_heveae_TC161_v1.0	na	assembly from type material	na	haploid	fungi	24337763	24318220	48.000000	0	27	125	NCBI RefSeq	Annotation submitted by NCBI RefSeq	2016-09-22	8346	8201	145	26693682
GCF_038497685.1	PRJNA1141512	SAMN39692926	JBBJJJ000000000.1	reference genome	1337062	1337062	Kockiozyma suomiensis	strain=NRRL Y-17356	na	latest	Scaffold	Major	Full	2024-04-24	Lipsuo1	DOE Joint Genome Institute	GCA_038497685.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/038/497/685/GCF_038497685.1_Lipsuo1	na	assembly from type material	na	haploid	fungi	14000343	13999946	44.500000	0	36	41	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-07-31	6203	6129	74	38638323
GCF_038363865.1	PRJNA1140273	SAMN32723710	JAQQWN000000000.1	reference genome	1337664	1337664	Apiospora hydei	strain=CBS 114990	na	latest	Contig	Major	Full	2024-04-17	ASM3836386v1	Aalborg university	GCA_038363865.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/038/363/865/GCF_038363865.1_ASM3836386v1	na	assembly from type material	na	haploid	fungi	47384980	47384980	53.000000	0	10	10	Aalborg university	Annotation submitted by Aalborg university	2024-07-31	15453	15453	0	na
GCF_038363985.1	PRJNA1140273	SAMN32723610	JAQQWO000000000.1	reference genome	1337665	1337665	Apiospora kogelbergensis	strain=CBS 113332	na	latest	Contig	Major	Full	2024-04-17	ASM3836398v1	Aalborg university	GCA_038363985.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/038/363/985/GCF_038363985.1_ASM3836398v1	na	na	na	haploid	fungi	46602209	46602209	53.000000	0	20	20	Aalborg university	Annotation submitted by Aalborg university	2024-07-31	15232	15232	0	na
GCF_002708625.1	PRJNA430271	SAMN02745869	JOSV00000000.1	reference genome	1340429	58291	Rhizopus microsporus ATCC 52813	strain=ATCC 52813	na	latest	Scaffold	Major	Full	2017-10-23	Rhimi1_1	DOE Joint Genome Institute	GCA_002708625.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/708/625/GCF_002708625.1_Rhimi1_1	na	na	na	haploid	fungi	25972395	25347720	37.500000	0	131	823	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-04-18	10958	10888	70	27956601
GCF_003344945.1	PRJNA495497	SAMN05446521	QQZQ00000000.1	reference genome	1341132	1341132	Aspergillus welwitschiae	strain=CBS 139.54b	na	latest	Scaffold	Major	Full	2018-07-30	Aspwel1	DOE Joint Genome Institute	GCA_003344945.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/344/945/GCF_003344945.1_Aspwel1	na	na	na	haploid	fungi	37511876	37478041	49.500000	0	396	514	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-22	13955	13682	268	na
GCF_028827695.1	PRJNA973687	SAMN30185347	JAQJAJ000000000.1	reference genome	1343394	1343394	Penicillium maclennaniae	strain=IBT 15551	na	latest	Contig	Major	Full	2023-02-23	ASM2882769v1	Aalborg University	GCA_028827695.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/827/695/GCF_028827695.1_ASM2882769v1	na	assembly from type material	na	haploid	fungi	27935234	27935234	49.500000	0	8	8	Aalborg University	Annotation submitted by Aalborg University	2023-06-06	10267	10267	0	36726175
GCF_001661345.1	PRJNA374039	SAMN02746076	LYBR00000000.1	reference genome	1344418	54195	Ascoidea rubescens DSM 1968	strain=DSM 1968	na	latest	Scaffold	Major	Full	2016-09-15	Ascru1	DOE Joint Genome Institute	GCA_001661345.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/661/345/GCF_001661345.1_Ascru1	na	na	na	haploid	fungi	17503998	17458255	33.000000	0	63	326	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-07-15	6962	6785	176	27535936
GCF_000803265.1	PRJNA302310	SAMN02867507	JOKQ00000000.1	reference genome	1354746	174685	Ordospora colligata OC4	strain=OC4	na	latest	Contig	Major	Full	2014-12-17	ASM80326v1	University of British Columbia	GCA_000803265.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/803/265/GCF_000803265.1_ASM80326v1	na	na	na	haploid	fungi	2290528	2290528	38.500000	0	15	15	University of British Columbia	Annotation submitted by University of British Columbia	2024-01-05	1879	1820	59	25587016
GCF_000497045.1	PRJNA292598	SAMN02334589	AWXO00000000.1	reference genome	1365824	1392244	Kalmanozyma brasiliensis GHG001	strain=GHG001	na	latest	Scaffold	Major	Full	2013-11-15	PSEUBRA1	Laboratorio Nacional de Ciencia e Tecnologia do Bioetanol	GCA_000497045.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/497/045/GCF_000497045.1_PSEUBRA1	na	assembly from type material	na	haploid	fungi	17325407	17323034	58.000000	0	45	132	Brazilian Biorenewables National Laboratory (LNBR/CNPEM)	Annotation submitted by Brazilian Biorenewables National Laboratory (LNBR/CNPEM)	2023-09-13	6542	6421	121	24356824;24682702
GCF_001651985.1	PRJNA342681	SAMN04497957	LVYI00000000.1	reference genome	1367422	1367422	Fonsecaea erecta	strain=CBS 125763	na	latest	Scaffold	Major	Full	2016-05-25	ASM165198v1	Federal University of Parana	GCA_001651985.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/651/985/GCF_001651985.1_ASM165198v1	na	na	na	haploid	fungi	34747975	34728508	53.000000	0	57	57	Federal University of Parana	Annotation submitted by Federal University of Parana	2017-08-28	12120	12090	30	na
GCF_020536065.1	PRJNA801201	SAMN16124933	JAEUBE000000000.1	reference genome	1378263	1378263	Ogataea philodendri	strain=CBS6075	na	latest	Scaffold	Major	Full	2021-10-20	ASM2053606v1	Barcelona Supercomputing Center	GCA_020536065.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/536/065/GCF_020536065.1_ASM2053606v1	na	assembly from type material	na	haploid	fungi	9002259	9001957	47.500000	0	539	539	Barcelona Supercomputing Center	Annotation submitted by Barcelona Supercomputing Center	2023-04-03	7511	7457	27	33906412
GCF_001653235.2	PRJNA342685	SAMN02296946	LSBJ00000000.2	reference genome	1380566	280754	Pochonia chlamydosporia 170	na	170	latest	Chromosome	Major	Full	2017-07-10	ASM165323v2	The Institute of Vegetables and Flowers CAAS	GCA_001653235.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/653/235/GCF_001653235.2_ASM165323v2	na	na	na	haploid	fungi	44215803	44192108	49.500000	7	49	49	The Institute of Vegetables and Flowers CAAS	Annotation submitted by The Institute of Vegetables and Flowers CAAS	2017-09-08	14318	14204	113	27416025
GCF_000576695.1	PRJNA264007	SAMEA3138920	CBUD000000000.2	reference genome	1382522	317047	Kuraishia capsulata CBS 1993	strain=CBS 1993	na	latest	Scaffold	Major	Full	2014-02-11	AUH_PRJEB4427_v1	Genoscope CEA	GCA_000576695.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/576/695/GCF_000576695.1_AUH_PRJEB4427_v1	na	assembly from type material	na	haploid	fungi	11371246	11337613	45.500000	0	7	57	Genoscope CEA	Annotation submitted by Genoscope CEA	2020-02-04	5988	5988	0	na
GCF_022830035.1	PRJNA858125	SAMN23192527	JALAZP000000000.1	reference genome	1387563	1387563	Ophidiomyces ophidiicola	strain=CBS 122913	na	latest	Scaffold	Major	Full	2022-04-07	ASM2283003v1	U.S. Geological Survey - National Wildlife Health Center	GCA_022830035.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/830/035/GCF_022830035.1_ASM2283003v1	na	assembly from type material	na	haploid	fungi	21919615	21919333	47.500000	0	115	115	U.S. Geological Survey - National Wildlife Health Center	Annotation submitted by U.S. Geological Survey - National Wildlife Health Center	2022-07-15	6936	6833	103	na
GCF_000600275.1	PRJNA721986	SAMN02744096	AWRT00000000.1	reference genome	1388766	396024	Aspergillus ruber CBS 135680	strain=CBS 135680	na	latest	Scaffold	Major	Full	2014-03-27	Eurhe1	DOE Joint Genome Institute	GCA_000600275.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/600/275/GCF_000600275.1_Eurhe1	na	na	na	haploid	fungi	26209327	26075740	49.000000	0	110	371	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-21	10229	10054	173	24811710
GCF_010015585.1	PRJNA625771	SAMN02744867	JAADKC000000000.1	reference genome	1392243	1341166	Eremomyces bilateralis CBS 781.70	strain=CBS 781.70	na	latest	Scaffold	Major	Full	2020-01-29	Erebi1	DOE Joint Genome Institute	GCA_010015585.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/015/585/GCF_010015585.1_Erebi1	na	assembly from type material	na	haploid	fungi	26864015	26620102	52.000000	0	95	351	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2020-04-21	9933	9874	57	na
GCF_010015815.1	PRJNA625770	SAMN02745847	JAADKQ000000000.1	reference genome	1392245	548649	Dothidotthia symphoricarpi CBS 119687	strain=CBS 119687	na	latest	Scaffold	Major	Full	2020-01-29	Dotsy1	DOE Joint Genome Institute	GCA_010015815.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/015/815/GCF_010015815.1_Dotsy1	na	assembly from type material	na	haploid	fungi	34433519	34250354	48.000000	0	59	349	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2020-04-21	11821	11704	113	na
GCF_002847485.1	PRJNA453590	SAMN02744593	MSFM00000000.1	reference genome	1392248	41068	Aspergillus campestris IBT 28561	strain=IBT 28561	na	latest	Contig	Major	Full	2017-12-27	Aspcam1	DOE Joint Genome Institute	GCA_002847485.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/847/485/GCF_002847485.1_Aspcam1	na	na	na	haploid	fungi	28257496	28257496	51.000000	0	62	62	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-21	9823	9654	163	na
GCF_002849105.1	PRJNA453591	SAMN02744649	MSFO00000000.1	reference genome	1392250	306088	Aspergillus steynii IBT 23096	strain=IBT 23096	na	latest	Contig	Major	Full	2017-12-30	Aspste1	DOE Joint Genome Institute	GCA_002849105.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/849/105/GCF_002849105.1_Aspste1	na	assembly from type material	na	haploid	fungi	37847960	37847960	49.000000	0	37	37	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-21	13145	12916	218	na
GCF_002847465.1	PRJNA453589	SAMN02744592	MSZS00000000.1	reference genome	1392255	340412	Aspergillus novofumigatus IBT 16806	strain=IBT 16806	na	latest	Contig	Major	Full	2017-12-27	Aspnov1	DOE Joint Genome Institute	GCA_002847465.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/847/465/GCF_002847465.1_Aspnov1	na	assembly from type material	na	haploid	fungi	32440129	32440129	49.000000	0	62	62	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-21	11614	11421	182	na
GCF_002846915.1	PRJNA722000	SAMN02744596	MSFN00000000.2	reference genome	1392256	138278	Aspergillus ochraceoroseus IBT 24754	strain=IBT 24754	na	latest	Contig	Major	Full	2018-04-16	Aspergillus ochraceoroseus IBT 24754 v1.1	DOE Joint Genome Institute	GCA_002846915.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/846/915/GCF_002846915.1_Aspergillus_ochraceoroseus_IBT_24754_v1.1	na	na	na	haploid	fungi	27718211	27718211	44.000000	0	34	34	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-21	8970	8821	146	29317534
GCF_025526975.1	PRJNA926496	SAMN10865777	JAHLJU000000000.1	reference genome	1396493	1396493	Fimicolochytrium jonesii	strain=JEL569	na	latest	Contig	Major	Full	2022-09-27	Fimjon1	DOE Joint Genome Institute	GCA_025526975.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/526/975/GCF_025526975.1_Fimjon1	na	assembly from type material	na	haploid	fungi	30619153	30619153	54.000000	0	57	57	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2023-01-27	10236	10065	151	36037379
GCF_039999085.1	PRJNA1141545	SAMN02744856	JBCLYN000000000.1	reference genome	1397322	29899	Cystobasidium minutum MCA 4210	strain=MCA 4210	na	latest	Scaffold	Major	Full	2024-05-28	Rhomi1	DOE Joint Genome Institute	GCA_039999085.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/039/999/085/GCF_039999085.1_Rhomi1	na	na	na	haploid	fungi	20824934	20802196	50.000000	0	38	64	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-07-31	7862	7806	49	30264407
GCF_000961545.1	PRJNA319337	SAMN03199974	AXCR00000000.1	reference genome	1397361	29908	Sporothrix schenckii 1099-18	strain=1099-18	na	latest	Contig	Major	Full	2015-03-24	S_schenckii_v1	LNCC	GCA_000961545.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/961/545/GCF_000961545.1_S_schenckii_v1	na	na	na	haploid	fungi	32375103	32375103	55.000000	0	16	16	LNCC	Annotation submitted by LNCC	2022-04-19	10389	10277	112	25351875;25480940
GCF_000820605.1	PRJNA721989	SAMN03201250	AWTV00000000.1	reference genome	1398154	545650	Sporothrix brasiliensis 5110	strain=5110	na	latest	Contig	Major	Full	2015-01-16	S_brasiliensis_5110_v1	LNCC	GCA_000820605.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/820/605/GCF_000820605.1_S_brasiliensis_5110_v1	na	na	na	haploid	fungi	33205847	33205847	54.500000	0	13	13	LNCC	Annotation submitted by LNCC	2021-04-20	9231	9091	140	25351875
GCF_000968595.1	PRJNA292605	SAMN03453569	LASV00000000.1	reference genome	1408163	68825	Rasamsonia emersonii CBS 393.64	strain=CBS 393.64	na	latest	Contig	Major	Full	2015-04-03	ASM96859v1	DSM Bio-based Products & Services B.V.	GCA_000968595.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/968/595/GCF_000968595.1_ASM96859v1	na	assembly from type material	na	haploid	fungi	28248805	28248805	50.500000	0	862	862	NCBI RefSeq	Annotation submitted by NCBI RefSeq	2015-08-12	9841	9841	0	na
GCF_001477535.1	PRJNA342697	SAMN02380716	LFWA00000000.1	reference genome	1408657	42068	Pneumocystis jirovecii RU7	strain=RU7	na	latest	Contig	Major	Full	2015-12-22	Pneu_jiro_RU7_V2	Broad Institute	GCA_001477535.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/477/535/GCF_001477535.1_Pneu_jiro_RU7_V2	na	na	na	haploid	fungi	8396240	8396240	28.500000	0	70	70	Broad Institute	Annotation submitted by Broad Institute	2022-04-19	3811	3761	50	na
GCF_001477545.1	PRJNA342696	SAMN02380717	LFVZ00000000.1	reference genome	1408658	4754	Pneumocystis carinii B80	strain=B80	na	latest	Contig	Major	Full	2015-12-22	Pneu_cari_B80_V3	Broad Institute	GCA_001477545.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/477/545/GCF_001477545.1_Pneu_cari_B80_V3	na	na	na	haploid	fungi	7661456	7661456	28.000000	0	62	62	Broad Institute	Annotation submitted by Broad Institute	2017-08-28	3695	3646	49	na
GCF_036810445.1	PRJNA1105968	SAMN02412473	na	reference genome	1423913	1247712	Kwoniella europaea PYCC6329	strain=PYCC6329	na	latest	Complete Genome	Major	Full	2024-07-02	ASM3681044v1	Broad Institute	GCA_036810445.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/036/810/445/GCF_036810445.1_ASM3681044v1	na	na	na	haploid	fungi	22833461	22833461	44.500000	3	3	3	Broad Institute	Annotation submitted by Broad Institute	2024-07-02	8670	8575	64	na
GCF_001907595.1	PRJNA374571	SAMN03339010	LFMY00000000.1	reference genome	1441469	1441469	Talaromyces atroroseus	strain=IBT 11181	na	latest	Scaffold	Major	Full	2016-12-16	ASM190759v1	Technical University of Denmark	GCA_001907595.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/907/595/GCF_001907595.1_ASM190759v1	na	na	na	haploid	fungi	30858562	30834766	44.500000	0	48	48	Technical University of Denmark	Annotation submitted by Technical University of Denmark	2017-08-28	9523	9523	0	na
GCF_000835455.1	PRJNA292603	SAMN02567656	JYBS00000000.1	reference genome	1442368	40355	Fonsecaea pedrosoi CBS 271.37	strain=CBS 271.37	na	latest	Scaffold	Major	Full	2015-02-23	Fons_pedr_CBS_271_37_V1	Broad Institute	GCA_000835455.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/835/455/GCF_000835455.1_Fons_pedr_CBS_271_37_V1	na	assembly designated as neotype	na	haploid	fungi	34688880	34632884	52.500000	0	11	98	Broad Institute	Annotation submitted by Broad Institute	2024-01-05	12573	12527	41	na
GCF_000835555.1	PRJNA292602	SAMN02567657	JYBU00000000.1	reference genome	1442369	86056	Rhinocladiella mackenziei CBS 650.93	strain=CBS 650.93	na	latest	Scaffold	Major	Full	2015-02-23	Rhin_mack_CBS_650_93_V1	Broad Institute	GCA_000835555.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/835/555/GCF_000835555.1_Rhin_mack_CBS_650_93_V1	na	assembly from type material	na	haploid	fungi	32474431	32433268	50.500000	0	17	130	Broad Institute	Annotation submitted by Broad Institute	2024-01-05	11418	11382	33	na
GCF_000835475.1	PRJNA319323	SAMN02567658	JYBT00000000.1	reference genome	1442370	89940	Cladophialophora bantiana CBS 173.52	strain=CBS 173.52	na	latest	Scaffold	Major	Full	2015-02-23	Clad_bant_CBS_173_52_V1	Broad Institute	GCA_000835475.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/835/475/GCF_000835475.1_Clad_bant_CBS_173_52_V1	na	assembly from heterotypic synonym type material	na	haploid	fungi	36722552	36639109	51.500000	0	60	140	Broad Institute	Annotation submitted by Broad Institute	2024-01-05	12817	12762	51	na
GCF_000836435.1	PRJNA319325	SAMN02567659	JYBV00000000.1	reference genome	1442371	979981	Fonsecaea multimorphosa CBS 102226	strain=CBS 102226	na	latest	Scaffold	Major	Full	2015-02-25	Fons_mult_CBS_102226_V1	Broad Institute	GCA_000836435.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/836/435/GCF_000836435.1_Fons_mult_CBS_102226_V1	na	na	na	haploid	fungi	33447075	33428689	52.500000	0	67	133	Broad Institute	Annotation submitted by Broad Institute	2024-01-22	12405	12369	35	na
GCF_003184625.1	PRJNA479911	SAMN05660318	MSFP00000000.1	reference genome	1448310	1196635	Aspergillus neoniger CBS 115656	strain=CBS 115656	na	latest	Scaffold	Major	Full	2018-06-04	Aspneo1	DOE Joint Genome Institute	GCA_003184625.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/184/625/GCF_003184625.1_Aspneo1	na	assembly from type material	na	haploid	fungi	35416444	35398163	49.000000	0	169	243	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-22	12218	11934	280	na
GCF_003184925.1	PRJNA479920	SAMN05661105	MSFS00000000.1	reference genome	1448311	288669	Aspergillus vadensis CBS 113365	strain=CBS 113365	na	latest	Scaffold	Major	Full	2018-06-04	Aspvad1	DOE Joint Genome Institute	GCA_003184925.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/184/925/GCF_003184925.1_Aspvad1	na	assembly from type material	na	haploid	fungi	35663374	35658646	49.000000	0	60	107	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-22	12402	12130	265	na
GCF_003184785.1	PRJNA479916	SAMN05660717	PSTF00000000.1	reference genome	1448312	34381	Aspergillus japonicus CBS 114.51	strain=CBS 114.51	na	latest	Scaffold	Major	Full	2018-06-04	Aspjap1	DOE Joint Genome Institute	GCA_003184785.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/184/785/GCF_003184785.1_Aspjap1	na	assembly designated as neotype	na	haploid	fungi	36099954	36080550	51.000000	0	163	319	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-22	12338	12015	317	na
GCF_003184755.1	PRJNA479914	SAMN05660207	PSTD00000000.1	reference genome	1448313	319630	Aspergillus piperis CBS 112811	strain=CBS 112811	na	latest	Scaffold	Major	Full	2018-06-04	Asppip1	DOE Joint Genome Institute	GCA_003184755.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/184/755/GCF_003184755.1_Asppip1	na	assembly from type material	na	haploid	fungi	35280331	35269699	49.000000	0	47	122	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-22	12357	12068	284	na
GCF_003184535.1	PRJNA479907	SAMN05660444	MSFU00000000.1	reference genome	1448314	1340029	Aspergillus eucalypticola CBS 122712	strain=CBS 122712	na	latest	Contig	Major	Full	2018-06-04	Aspeuc1	DOE Joint Genome Institute	GCA_003184535.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/184/535/GCF_003184535.1_Aspeuc1	na	assembly from type material	na	haploid	fungi	34792412	34792412	49.000000	0	131	131	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-21	12127	11853	270	na
GCF_003184745.1	PRJNA479913	SAMN05660759	MSFT00000000.1	reference genome	1448315	446911	Aspergillus uvarum CBS 121591	strain=CBS 121591	na	latest	Scaffold	Major	Full	2018-06-04	Aspuva1	DOE Joint Genome Institute	GCA_003184745.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/184/745/GCF_003184745.1_Aspuva1	na	assembly from type material	na	haploid	fungi	35850703	35840536	51.000000	0	172	252	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-22	12342	12009	329	na
GCF_003184845.1	PRJNA479918	SAMN05660294	PSTI00000000.1	reference genome	1448316	301854	Aspergillus ibericus CBS 121593	strain=CBS 121593	na	latest	Scaffold	Major	Full	2018-06-04	Aspibe1	DOE Joint Genome Institute	GCA_003184845.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/184/845/GCF_003184845.1_Aspibe1	na	assembly from type material	na	haploid	fungi	33437983	33425899	50.500000	0	116	201	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-22	11983	11674	304	na
GCF_003184835.1	PRJNA479917	SAMN05660767	PSTH00000000.1	reference genome	1448317	319631	Aspergillus costaricaensis CBS 115574	strain=CBS 115574	na	latest	Scaffold	Major	Full	2018-06-04	Aspcos1	DOE Joint Genome Institute	GCA_003184835.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/184/835/GCF_003184835.1_Aspcos1	na	assembly from type material	na	haploid	fungi	36947918	36926566	47.500000	0	86	174	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-22	12234	11962	267	na
GCF_003184825.1	PRJNA722001	SAMN05660285	PSTG00000000.1	reference genome	1448319	1191702	Aspergillus fijiensis CBS 313.89	strain=CBS 313.89	na	latest	Scaffold	Major	Full	2018-06-04	Aspfij1	DOE Joint Genome Institute	GCA_003184825.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/184/825/GCF_003184825.1_Aspfij1	na	assembly from type material	na	haploid	fungi	36513906	36500514	50.000000	0	149	218	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-22	12324	12006	315	na
GCF_003184545.1	PRJNA479908	SAMN05660217	MSFL00000000.1	reference genome	1448321	51019	Aspergillus heteromorphus CBS 117.55	strain=CBS 117.55	na	latest	Contig	Major	Full	2018-06-04	Asphet1	DOE Joint Genome Institute	GCA_003184545.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/184/545/GCF_003184545.1_Asphet1	na	assembly designated as neotype	na	haploid	fungi	35607567	35607567	48.000000	0	205	205	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-21	11088	10782	305	na
GCF_003184765.1	PRJNA479915	SAMN05660730	PSTE00000000.1	reference genome	1448322	487661	Aspergillus aculeatinus CBS 121060	strain=CBS 121060	na	latest	Scaffold	Major	Full	2018-06-04	Aspacu1	DOE Joint Genome Institute	GCA_003184765.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/184/765/GCF_003184765.1_Aspacu1	na	assembly from type material	na	haploid	fungi	36471649	36442703	50.500000	0	121	325	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-22	12350	12024	323	na
GCF_010015735.1	PRJNA625762	SAMN05661102	JAADKL000000000.1	reference genome	1450172	1450171	Aaosphaeria arxii CBS 175.79	strain=CBS 175.79	na	latest	Scaffold	Major	Full	2020-01-29	Aaoar1	DOE Joint Genome Institute	GCA_010015735.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/015/735/GCF_010015735.1_Aaoar1	na	assembly from type material	na	haploid	fungi	38901049	38765871	50.000000	0	55	235	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2020-04-21	14293	14201	89	na
GCF_003184595.1	PRJNA479910	SAMN05660348	MSFR00000000.1	na	1450533	5061	Aspergillus niger CBS 101883	strain=CBS 101883	na	latest	Scaffold	Major	Full	2018-06-04	Asplac1	DOE Joint Genome Institute	GCA_003184595.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/184/595/GCF_003184595.1_Asplac1	na	assembly from heterotypic synonym type material	na	haploid	fungi	35853610	35830544	49.500000	0	107	197	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-22	13355	13078	272	na
GCF_003184695.1	PRJNA479912	SAMN05660981	PSTC00000000.1	reference genome	1450534	1191711	Aspergillus brunneoviolaceus CBS 621.78	strain=CBS 621.78	na	latest	Scaffold	Major	Full	2018-06-04	Aspbru1	DOE Joint Genome Institute	GCA_003184695.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/184/695/GCF_003184695.1_Aspbru1	na	assembly from type material	na	haploid	fungi	37477200	37451358	49.500000	0	153	259	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-22	12377	12059	316	na
GCF_003184525.1	PRJNA479906	SAMN05661070	MSFK00000000.1	reference genome	1450535	319627	Aspergillus sclerotioniger CBS 115572	strain=CBS 115572	na	latest	Contig	Major	Full	2018-06-04	Aspscl1	DOE Joint Genome Institute	GCA_003184525.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/184/525/GCF_003184525.1_Aspscl1	na	assembly from type material	na	haploid	fungi	36720365	36720365	49.500000	0	138	138	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-21	12603	12291	310	na
GCF_019112545.1	PRJNA756328	SAMN05660966	JAEACO000000000.1	reference genome	1450536	856835	Guyanagaster necrorhizus MCA 3950	strain=MCA 3950	na	latest	Scaffold	Major	Full	2021-07-05	Guyne1	DOE Joint Genome Institute	GCA_019112545.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/112/545/GCF_019112545.1_Guyne1	na	na	na	haploid	fungi	53686691	53110261	45.500000	0	168	689	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2021-11-22	14487	14263	203	na
GCF_003184865.1	PRJNA479919	SAMN05660655	PSTJ00000000.1	reference genome	1450537	319626	Aspergillus homomorphus CBS 101889	strain=CBS 101889	na	latest	Scaffold	Major	Full	2018-06-04	Asphom1	DOE Joint Genome Institute	GCA_003184865.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/184/865/GCF_003184865.1_Asphom1	na	assembly from type material	na	haploid	fungi	34054866	34020472	50.000000	0	152	247	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-22	11651	11349	301	na
GCF_003184585.1	PRJNA479909	SAMN05660449	MSFQ00000000.1	reference genome	1450539	979771	Aspergillus saccharolyticus JOP 1030-1	strain=JOP 1030-1	na	latest	Scaffold	Major	Full	2018-06-04	Aspsac1	DOE Joint Genome Institute	GCA_003184585.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/184/585/GCF_003184585.1_Aspsac1	na	na	na	haploid	fungi	31096189	31063439	50.500000	0	120	229	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-21	10375	10058	314	na
GCF_001642045.1	PRJNA342679	SAMN02745364	LXPO00000000.1	reference genome	1460663	1460663	Paraphaeosphaeria sporulosa	strain=AP3s5-JAC2a	na	latest	Scaffold	Major	Full	2016-05-11	Parsp1	DOE Joint Genome Institute	GCA_001642045.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/642/045/GCF_001642045.1_Parsp1	na	na	na	haploid	fungi	38464024	38084891	53.500000	0	61	445	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-01-07	14839	14729	104	na
GCF_014898435.1	PRJNA691331	SAMN10219765	RCTB00000000.1	reference genome	1463999	1463999	Botrytis sinoallii	strain=Bc 23	na	latest	Contig	Major	Full	2020-10-20	ASM1489843v1	Wageningen University	GCA_014898435.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/898/435/GCF_014898435.1_ASM1489843v1	na	assembly from type material	na	haploid	fungi	61289320	61289320	38.500000	0	47	47	Wageningen University	Annotation submitted by Wageningen University	2021-02-12	12200	12200	0	na
GCF_000760515.2	PRJNA292596	SAMN02714227	JMKJ00000000.1	reference genome	1485682	1485682	Mitosporidium daphniae	strain=UGP3	na	latest	Contig	Minor	Full	2014-09-30	UGP1.1	Illinois Institute of Technology	GCA_000760515.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/760/515/GCF_000760515.2_UGP1.1	na	assembly from type material	na	haploid	fungi	5635072	5635072	43.000000	0	610	610	Illinois Institute of Technology	Annotation submitted by Illinois Institute of Technology	2020-03-17	3291	3291	0	25313038
GCF_009193645.1	PRJNA602443	SAMN05446751	STFR00000000.1	reference genome	1506151	1506151	Aspergillus pseudonomiae	strain=CBS 119388	na	latest	Scaffold	Major	Full	2019-10-18	Asppsen1	DOE Joint Genome Institute	GCA_009193645.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/193/645/GCF_009193645.1_Asppsen1	na	assembly from type material	na	haploid	fungi	37780514	37763833	48.500000	0	374	515	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-02-22	13621	13384	233	na
GCF_028826965.1	PRJNA973687	SAMN30185292	JAPMSZ000000000.1	reference genome	1506179	1506179	Penicillium alfredii	strain=IBT 34128	na	latest	Contig	Major	Full	2023-02-23	ASM2882696v1	Aalborg University	GCA_028826965.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/826/965/GCF_028826965.1_ASM2882696v1	na	na	na	haploid	fungi	27430394	27430394	50.000000	0	11	11	Aalborg University	Annotation submitted by Aalborg University	2023-06-02	10161	10161	0	36726175
GCF_001204775.2	PRJNA309724	SAMN02768702	JNOM00000000.1	reference genome	1509407	41061	Aspergillus nomiae NRRL 13137	strain=NRRL 13137	na	latest	Contig	Minor	Full	2015-08-04	ASM120477v2	USDA-ARS-SRRC	GCA_001204775.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/204/775/GCF_001204775.2_ASM120477v2	na	assembly from type material	na	haploid	fungi	36137300	36137300	49.000000	0	1115	1115	USDA-ARS-SRRC	Annotation submitted by USDA-ARS-SRRC	2025-02-21	11904	11904	0	26216546
GCF_018340605.1	PRJNA758049	SAMD00140677	BHVY00000000.1	reference genome	1517512	1517512	Aspergillus pseudoviridinutans	strain=IFM 55266	na	latest	Scaffold	Major	Full	2021-03-12	Asppvi_assembly01	Medical Mycology Research Center	GCA_018340605.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/340/605/GCF_018340605.1_Asppvi_assembly01	na	na	na	haploid	fungi	33330675	33272285	49.500000	0	24	24	Medical Mycology Research Center	Annotation submitted by Medical Mycology Research Center	2025-02-22	11496	11281	215	na
GCF_003144195.1	PRJNA479902	SAMN02919188	MCHD00000000.1	reference genome	1522189	1522189	Ceraceosorus guamensis	strain=MCA 4658	na	latest	Scaffold	Major	Full	2018-05-21	Cersp1	DOE Joint Genome Institute	GCA_003144195.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/144/195/GCF_003144195.1_Cersp1	na	assembly from type material	na	haploid	fungi	24148100	24121162	56.000000	0	251	356	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2018-07-12	7861	7822	38	29771364
GCF_038497645.1	PRJNA1141511	SAMN39621400	JBBIXO000000000.1	reference genome	1546026	1546026	Lipomyces chichibuensis	strain=CBS 12929	na	latest	Scaffold	Major	Full	2024-04-24	Lipchi1	DOE Joint Genome Institute	GCA_038497645.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/038/497/645/GCF_038497645.1_Lipchi1	na	assembly from type material	na	haploid	fungi	16367653	16366228	46.500000	0	169	190	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-07-31	6640	6544	96	38638323
GCF_028827895.1	PRJNA973687	SAMN30185345	JAQJAH000000000.1	reference genome	1561947	1561947	Penicillium longicatenatum	strain=IBT 33135	na	latest	Contig	Major	Full	2023-02-23	ASM2882789v1	Aalborg University	GCA_028827895.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/827/895/GCF_028827895.1_ASM2882789v1	na	na	na	haploid	fungi	32457776	32457776	48.500000	0	7	7	Aalborg University	Annotation submitted by Aalborg University	2023-06-12	11980	11980	0	36726175
GCF_028828015.1	PRJNA973687	SAMN30185364	JAQJAU000000000.1	reference genome	1562058	1562058	Penicillium pulvis	strain=IBT 33274	na	latest	Contig	Major	Full	2023-02-23	ASM2882801v1	Aalborg University	GCA_028828015.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/828/015/GCF_028828015.1_ASM2882801v1	na	na	na	haploid	fungi	32647626	32647626	48.000000	0	8	8	Aalborg University	Annotation submitted by Aalborg University	2023-06-14	12165	12165	0	36726175
GCF_028828195.1	PRJNA973687	SAMN30185379	JAQKAM000000000.1	reference genome	1562060	1562060	Penicillium verhagenii	strain=IBT 33310	na	latest	Contig	Major	Full	2023-02-23	ASM2882819v1	Aalborg University	GCA_028828195.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/828/195/GCF_028828195.1_ASM2882819v1	na	na	na	haploid	fungi	32288599	32288599	47.000000	0	12	12	Aalborg University	Annotation submitted by Aalborg University	2023-06-09	11673	11673	0	36726175
GCF_013396195.1	PRJNA670753	SAMN13683597	JAAQRI000000000.1	reference genome	1567544	1567544	Fusarium tjaetaba	strain=NRRL 66243	na	latest	Scaffold	Major	Full	2020-07-10	ASM1339619v1	US Department of Agriculture, Agriculture Research Service	GCA_013396195.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/396/195/GCF_013396195.1_ASM1339619v1	na	assembly from type material	na	haploid	fungi	43066134	43063818	49.000000	0	866	866	US Department of Agriculture, Agriculture Research Service	Annotation submitted by US Department of Agriculture, Agriculture Research Service	2020-11-09	14181	14181	0	33059601
GCF_003144245.1	PRJNA479904	SAMN05446219	MCHB00000000.1	reference genome	1569628	1569628	Jaminaea rosea	strain=MCA 5214	na	latest	Scaffold	Major	Full	2018-05-21	Jamsp1	DOE Joint Genome Institute	GCA_003144245.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/144/245/GCF_003144245.1_Jamsp1	na	assembly from type material	na	haploid	fungi	16615586	16613265	59.500000	0	21	43	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2018-07-06	6904	6858	44	29771364
GCF_004337985.1	PRJNA554126	SAMN10496236	RRCL00000000.1	reference genome	1578925	1578925	Pyricularia pennisetigena	strain=Br36	na	latest	Chromosome	Major	Full	2019-03-19	PpBr36	Academia Sinica	GCA_004337985.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/337/985/GCF_004337985.1_PpBr36	na	na	na	haploid	fungi	49117040	48823082	47.500000	7	108	108	Academia Sinica	Annotation submitted by Academia Sinica	2019-07-12	11428	11428	0	30835262
GCF_036327395.1	PRJNA1105961	SAMN32875987	JAVHJV000000000.1	reference genome	1635080	1635080	Knufia obscura	strain=CCFEE 5817	CBS 148926	latest	Contig	Major	Full	2024-02-01	ASM3632739v1	University of Brasilia	GCA_036327395.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/036/327/395/GCF_036327395.1_ASM3632739v1	na	assembly from type material	na	haploid	fungi	30507620	30507620	50.500000	0	54	54	University of Brasilia	Annotation submitted by University of Brasilia	2024-05-01	11327	11248	79	na
GCF_039105145.1	PRJNA1141536	SAMN15949446	JBCAWK000000000.1	reference genome	1651941	1651941	Kwoniella newhampshirensis	strain=CBS 13917	na	latest	Chromosome	Major	Full	2024-05-09	ASM3910514v1	Broad Institute	GCA_039105145.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/039/105/145/GCF_039105145.1_ASM3910514v1	na	assembly from type material	na	haploid	fungi	20459564	20459564	51.000000	16	17	17	Broad Institute	Annotation submitted by Broad Institute	2024-07-31	7210	7145	37	38234769
GCF_022829205.1	PRJNA858124	SAMN17613219	JAFEVA000000000.1	reference genome	1658444	1658444	Neoarthrinium moseri	strain=CBS 164.80	na	latest	Scaffold	Major	Full	2022-04-06	ASM2282920v1	TU Wien	GCA_022829205.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/829/205/GCF_022829205.1_ASM2282920v1	na	assembly from type material	na	haploid	fungi	43702215	43701197	53.000000	0	230	230	TU Wien	Annotation submitted by TU Wien	2022-07-15	13929	13929	0	na
GCF_001299255.1	PRJNA309727	SAMN03765150	LFJN00000000.1	reference genome	1664694	1664694	Cyphellophora attinorum	strain=CBS 131958	na	latest	Contig	Major	Full	2015-09-25	ASM129925v1	CBS-KNAW Fungal Biodiversity Centre	GCA_001299255.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/299/255/GCF_001299255.1_ASM129925v1	na	assembly from type material	na	haploid	fungi	30363635	30363635	53.500000	0	131	131	CBS-KNAW Fungal Biodiversity Centre	Annotation submitted by CBS-KNAW Fungal Biodiversity Centre	2023-12-28	11841	11841	0	26586868
GCF_030869225.1	PRJNA1032068	SAMN05949354	MOOD00000000.1	reference genome	1671311	1671311	Colletotrichum abscissum	strain=IMI 504890	na	latest	Scaffold	Major	Full	2023-08-24	CABS01	University of Western Brittany	GCA_030869225.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/869/225/GCF_030869225.1_CABS01	na	na	na	haploid	fungi	53936108	53933822	51.000000	0	560	560	University of Western Brittany	Annotation submitted by University of Western Brittany	2023-10-30	17223	17223	0	na
GCF_020744255.1	PRJNA801207	SAMN06297163	JAGTJQ000000000.1	reference genome	1682393	1682393	Microdochium trichocladiopsis	strain=MPI-CAGE-CH-0230	na	latest	Contig	Major	Full	2021-11-04	Mictri1	DOE Joint Genome Institute	GCA_020744255.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/744/255/GCF_020744255.1_Mictri1	na	na	na	haploid	fungi	49282715	49282715	56.000000	0	26	26	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-01-28	16222	16023	198	na
GCF_003144135.1	PRJNA479901	SAMN05428992	MCHA00000000.1	reference genome	1684307	1684307	Pseudomicrostroma glucosiphilum	strain=MCA 4718	na	latest	Scaffold	Major	Full	2018-05-21	Rhodsp1	DOE Joint Genome Institute	GCA_003144135.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/144/135/GCF_003144135.1_Rhodsp1	na	assembly from type material	na	haploid	fungi	17184282	17163232	56.500000	0	30	87	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2018-07-06	6727	6681	45	29771364
GCF_036872675.1	PRJNA1105960	SAMN23564126	JAVRRI000000000.1	reference genome	1690604	1690604	Lithohypha guttulata	strain=CCFEE 5908	na	latest	Scaffold	Major	Full	2024-02-26	ASM3687267v1	Shed LighT in the daRk lineagES of the Fungal tree of life (STRES)	GCA_036872675.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/036/872/675/GCF_036872675.1_ASM3687267v1	na	na	na	haploid	fungi	24440621	24439557	49.000000	0	142	142	Shed LighT in the daRk lineagES of the Fungal tree of life (STRES)	Annotation submitted by Shed LighT in the daRk lineagES of the Fungal tree of life (STRES)	2024-05-01	8794	8740	54	na
GCF_035927105.1	PRJNA1105960	SAMN23564062	JAVRRD000000000.1	reference genome	1690606	1690606	Exophiala bonariae	strain=CCFEE 5792	na	latest	Contig	Major	Full	2024-01-22	ASM3592710v1	Shed LighT in the daRk lineagES of the Fungal tree of life (STRES)	GCA_035927105.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/035/927/105/GCF_035927105.1_ASM3592710v1	na	assembly from type material	na	haploid	fungi	37886950	37886950	49.500000	0	178	178	Shed LighT in the daRk lineagES of the Fungal tree of life (STRES)	Annotation submitted by Shed LighT in the daRk lineagES of the Fungal tree of life (STRES)	2024-05-01	13107	13061	46	na
GCF_035928015.1	PRJNA1105960	SAMN23564129	JAVRRT000000000.1	reference genome	1690608	1690608	Saxophila tyrrhenica	strain=CCFEE 5935	na	latest	Scaffold	Major	Full	2024-01-22	ASM3592801v1	Shed LighT in the daRk lineagES of the Fungal tree of life (STRES)	GCA_035928015.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/035/928/015/GCF_035928015.1_ASM3592801v1	na	assembly from type material	na	haploid	fungi	25918878	25917654	55.500000	0	90	90	Shed LighT in the daRk lineagES of the Fungal tree of life (STRES)	Annotation submitted by Shed LighT in the daRk lineagES of the Fungal tree of life (STRES)	2024-05-01	11243	11205	38	na
GCF_008629635.2	PRJNA602435	SAMN07457167	na	reference genome	1734106	1734106	Kwoniella shandongensis	strain=CBS 12478	na	latest	Complete Genome	Major	Full	2024-06-24	ASM862963v2	Broad Institute	GCA_008629635.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/629/635/GCF_008629635.2_ASM862963v2	na	assembly from type material	na	haploid	fungi	21305292	21305292	50.000000	14	14	14	Broad Institute	Annotation submitted by Broad Institute	2024-06-24	7418	7347	46	na
GCF_015039405.1	PRJNA691513	SAMN02745813	WJDU00000000.1	reference genome	1750568	1750568	Cantharellus anzutake	strain=C23	na	latest	Contig	Major	Full	2020-10-28	Cananz1	DOE Joint Genome Institute	GCA_015039405.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/039/405/GCF_015039405.1_Cananz1	na	na	na	haploid	fungi	120173979	120173979	49.000000	0	614	614	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2021-02-12	17292	16954	320	33046698
GCF_024628925.1	PRJNA895882	SAMN20346986	JAHZQW000000000.1	reference genome	1775924	1775924	Candida margitis	strain=CBS 14175	na	latest	Scaffold	Major	Full	2022-08-10	ASM2462892v1	Barcelona Supercomputing Center	GCA_024628925.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/628/925/GCF_024628925.1_ASM2462892v1	na	assembly from type material	na	haploid	fungi	12909612	12790840	38.500000	0	200	200	Barcelona Supercomputing Center	Annotation submitted by Barcelona Supercomputing Center	2022-11-04	5528	5488	0	35438177
GCF_963989305.1	PRJNA1107285	SAMEA115394517	na	reference genome	1775926	1775926	Lodderomyces beijingensis	strain=CBS 14171	na	latest	Complete Genome	Major	Full	2024-03-15	lodBeiA1	Comenius University, Faculty of Mathematics, Physics and Informatics	GCA_963989305.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/963/989/305/GCF_963989305.1_lodBeiA1	na	assembly from type material	na	haploid	fungi	15114296	15114296	45.500000	8	8	8	Comenius University, Faculty of Mathematics, Physics and Informatics	Annotation submitted by Comenius University, Faculty of Mathematics, Physics and Informatics	2024-07-31	6143	6143	0	na
GCF_036884675.1	PRJNA1105970	SAMN09070721	JAXBLT000000000.1	reference genome	1788519	1788519	Scheffersomyces coipomensis	strain=NRRL Y-17651	na	latest	Contig	Major	Full	2024-02-27	Schcoi1	DOE Joint Genome Institute	GCA_036884675.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/036/884/675/GCF_036884675.1_Schcoi1	na	assembly from type material	na	haploid	fungi	14757374	14757374	31.500000	0	23	23	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-05-01	6328	6180	133	38321504
GCF_028829455.1	PRJNA973687	SAMN30185366	JAQJAW000000000.1	reference genome	1792511	1792511	Penicillium robsamsonii	strain=IBT 29466	na	latest	Contig	Major	Full	2023-02-23	ASM2882945v1	Aalborg University	GCA_028829455.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/829/455/GCF_028829455.1_ASM2882945v1	na	assembly from type material	na	haploid	fungi	29159420	29159420	48.500000	0	12	12	Aalborg University	Annotation submitted by Aalborg University	2023-06-12	11254	11254	0	36726175
GCF_001642395.1	PRJNA1151049	SAMN04499096	LTDL00000000.1	reference genome	1805483	1805483	Nematocida displodere	strain=JUm2807	na	latest	Scaffold	Major	Full	2016-05-11	ASM164239v1	University of California San Diego	GCA_001642395.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/642/395/GCF_001642395.1_ASM164239v1	na	na	na	haploid	fungi	3066400	3057189	49.000000	0	42	42	University of California San Diego	Annotation submitted by University of California San Diego	2024-09-04	2278	2278	0	27362540
GCF_006535985.1	PRJNA576245	SAMN08987497	QEAO00000000.1	reference genome	1806994	1806994	Synchytrium microbalum	strain=JEL517	na	latest	Scaffold	Major	Full	2019-07-01	ASM653598v1	Agriculture and Agri-Food Canada	GCA_006535985.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/535/985/GCF_006535985.1_ASM653598v1	na	assembly from type material	na	haploid	fungi	26244175	26237389	43.500000	0	169	169	Agriculture and Agri-Food Canada	Annotation submitted by Agriculture and Agri-Food Canada	2019-10-09	6304	6304	0	31209237
GCF_047715665.1	PRJNA1256993	SAMN05878095	JBDQZP000000000.1	reference genome	1810916	1810916	Aspergillus karnatakaensis	strain=CBS 102800	na	latest	Scaffold	Major	Full	2025-02-11	Aspkar1	DOE Joint Genome Institute	GCA_047715665.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/047/715/665/GCF_047715665.1_Aspkar1	na	assembly from type material	na	haploid	fungi	36255367	36249801	50.000000	0	239	285	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-05-05	13693	13537	155	39897699
GCF_003369625.1	PRJNA495496	SAMN07195632	PVWQ00000000.1	reference genome	1810919	1810919	Aspergillus mulundensis	strain=DSM 5745	na	latest	Scaffold	Major	Full	2018-08-10	ASM336962v1	The University of Texas Health Science Center at Houston	GCA_003369625.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/369/625/GCF_003369625.1_ASM336962v1	na	assembly from type material	na	haploid	fungi	45341896	44209275	43.000000	0	160	160	The University of Texas Health Science Center at Houston	Annotation submitted by The University of Texas Health Science Center at Houston	2025-02-22	11603	11603	0	30018880
GCF_047715825.1	PRJNA1256997	SAMN05446598	JBDQZW000000000.1	reference genome	1810926	1810926	Aspergillus stella-maris	strain=CBS 113639	na	latest	Scaffold	Major	Full	2025-02-11	Aspstel1_1	DOE Joint Genome Institute	GCA_047715825.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/047/715/825/GCF_047715825.1_Aspstel1_1	na	na	na	haploid	fungi	33998249	33971910	50.500000	0	266	323	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-05-05	12682	12536	146	39897699
GCF_047715775.1	PRJNA1256996	SAMN05446834	JBDQZT000000000.1	reference genome	1810928	1810928	Aspergillus undulatus	strain=CBS 261.88	na	latest	Scaffold	Major	Full	2025-02-11	Aspund1_1	DOE Joint Genome Institute	GCA_047715775.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/047/715/775/GCF_047715775.1_Aspund1_1	na	assembly from type material	na	haploid	fungi	32112944	32107223	50.500000	0	190	236	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2025-05-05	11951	11798	153	39897699
GCF_001773325.1	PRJNA395479	SAMN04884538	LXJU00000000.1	reference genome	1835702	1835702	Penicillium arizonense	strain=CBS 141311	na	latest	Scaffold	Major	Full	2016-10-18	ASM177332v1	Chalmers University of Technology	GCA_001773325.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/773/325/GCF_001773325.1_ASM177332v1	na	assembly from type material	na	haploid	fungi	33729052	33718215	49.000000	0	396	396	Chalmers University of Technology	Annotation submitted by Chalmers University of Technology	2017-09-29	12200	12200	0	27739446
GCF_026319265.1	PRJNA926500	SAMN29758414	JANUHP000000000.1	reference genome	1836956	1836956	Colletotrichum chrysophilum	strain=AFK26	na	latest	Contig	Major	Full	2022-11-23	ASM2631926v1	Canadian Food Inspection Agency	GCA_026319265.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/319/265/GCF_026319265.1_ASM2631926v1	na	na	na	haploid	fungi	55966644	55966644	53.000000	0	652	652	Canadian Food Inspection Agency	Annotation submitted by Canadian Food Inspection Agency	2023-01-29	14530	14123	407	na
GCF_028828085.1	PRJNA973687	SAMN30185359	JAQJAQ000000000.1	reference genome	1850975	1850975	Penicillium nucicola	strain=IBT 29836	na	latest	Contig	Major	Full	2023-02-23	ASM2882808v1	Aalborg University	GCA_028828085.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/828/085/GCF_028828085.1_ASM2882808v1	na	na	na	haploid	fungi	31087567	31087567	49.000000	0	17	17	Aalborg University	Annotation submitted by Aalborg University	2023-06-12	11519	11518	0	36726175
GCF_033439085.1	PRJNA1072653	SAMN06296441	JAUEPN000000000.1	reference genome	1854472	1854472	Chaetomium fimeti	strain=CBS 168.71	na	latest	Contig	Major	Full	2023-11-08	Chafi1	DOE Joint Genome Institute	GCA_033439085.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/033/439/085/GCF_033439085.1_Chafi1	na	na	na	haploid	fungi	35321551	35321551	56.000000	0	24	24	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-02-06	11628	11448	180	37820761
GCF_020726465.1	PRJNA1140282	SAMN12812663	JAGIZQ000000000.1	reference genome	1854479	1854479	Chaetomium tenue	strain=MPI-SDFR-AT-0079	na	latest	Contig	Major	Full	2021-10-29	Chagl1	DOE Joint Genome Institute	GCA_020726465.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/726/465/GCF_020726465.1_Chagl1	na	na	na	haploid	fungi	34154134	34154134	56.500000	0	9	9	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-07-31	11734	11552	180	na
GCF_000292625.1	PRJNA721985	SAMN02981302	AEUS00000000.1	reference genome	1858805	1858805	Dacryopinax primogenitus	strain=DJM-731 SS1	na	latest	Scaffold	Major	Full	2012-08-23	Dacryopinax sp. DJM 731 SSP1 v1.0	DOE Joint Genome Institute	GCA_000292625.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/292/625/GCF_000292625.1_Dacryopinax_sp._DJM_731_SSP1_v1.0	na	assembly from type material	na	haploid	fungi	29503487	27600925	52.000000	0	99	964	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2021-04-21	10298	10237	59	22745431
GCF_036417295.1	PRJNA1105963	SAMN15950282	na	reference genome	1859122	1859122	Cryptococcus decagattii	strain=7685027	na	latest	Complete Genome	Major	Full	2024-02-06	ASM3641729v1	Broad Institute	GCA_036417295.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/036/417/295/GCF_036417295.1_ASM3641729v1	na	na	na	haploid	fungi	17768546	17768546	48.000000	14	14	14	Broad Institute	Annotation submitted by Broad Institute	2024-05-01	6671	6557	61	na
GCF_028829775.1	PRJNA973687	SAMN30185370	JAQJZT000000000.1	reference genome	1882272	1882272	Penicillium samsonianum	strain=IBT 33392	na	latest	Contig	Major	Full	2023-02-23	ASM2882977v1	Aalborg University	GCA_028829775.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/829/775/GCF_028829775.1_ASM2882977v1	na	assembly from type material	na	haploid	fungi	38201884	38201884	48.000000	0	11	11	Aalborg University	Annotation submitted by Aalborg University	2023-06-12	14061	14061	0	36726175
GCF_028828495.1	PRJNA973687	SAMN30185365	JAQJAV000000000.1	reference genome	1903569	1903569	Penicillium riverlandense	strain=IBT 135883	na	latest	Contig	Major	Full	2023-02-23	ASM2882849v1	Aalborg University	GCA_028828495.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/828/495/GCF_028828495.1_ASM2882849v1	na	na	na	haploid	fungi	27919989	27919989	52.000000	0	8	8	Aalborg University	Annotation submitted by Aalborg University	2023-06-12	11255	11255	0	36726175
GCF_016758775.1	PRJNA727290	SAMN09062943	JABBWN000000000.1	reference genome	1904413	1904413	Suillus clintonianus	strain=FC179	na	latest	Contig	Major	Full	2021-01-27	Suicli1	DOE Joint Genome Institute	GCA_016758775.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/758/775/GCF_016758775.1_Suicli1	na	na	na	haploid	fungi	46838326	46838326	48.500000	0	288	288	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2021-09-15	15647	15528	118	33355923
GCF_016758755.1	PRJNA727289	SAMN12812516	JABBWM000000000.1	reference genome	1912936	1912936	Suillus discolor	strain=FC423	na	latest	Contig	Major	Full	2021-01-27	Suidis1	DOE Joint Genome Institute	GCA_016758755.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/758/755/GCF_016758755.1_Suidis1	na	na	na	haploid	fungi	60609832	60609832	47.000000	0	809	809	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2021-09-15	16641	16509	122	33355923
GCF_016647785.1	PRJNA727288	SAMN12811781	JABBWK000000000.1	reference genome	1912939	1912939	Suillus fuscotomentosus	strain=FC203	na	latest	Contig	Major	Full	2021-01-15	Suifus1	DOE Joint Genome Institute	GCA_016647785.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/647/785/GCF_016647785.1_Suifus1	na	na	na	haploid	fungi	79655913	79655913	47.000000	0	737	737	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2021-09-15	18660	18510	147	33355923
GCF_024244095.1	PRJNA835129	SAMN13280716	JALPMZ000000000.1	reference genome	1912981	1912981	Nematocida homosporus	strain=JUm1504	na	latest	Scaffold	Major	Full	2022-07-13	nhom_JUm1504	University of Toronto	GCA_024244095.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/244/095/GCF_024244095.1_nhom_JUm1504	na	na	na	haploid	fungi	4282417	4282099	41.000000	0	183	183	University of Toronto	Annotation submitted by University of Toronto	2022-11-01	2542	2542	0	na
GCF_021653875.1	PRJNA835129	SAMN13280717	JAKFRD000000000.1	reference genome	1912982	1912982	Nematocida major	strain=JUm2507	na	latest	Scaffold	Major	Full	2022-01-27	ASM2165387v1	University of Toronto	GCA_021653875.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/653/875/GCF_021653875.1_ASM2165387v1	na	assembly from type material	na	haploid	fungi	3787290	3786700	49.000000	0	111	111	University of Toronto	Annotation submitted by University of Toronto	2022-05-06	2415	2415	0	na
GCF_024244105.1	PRJNA835129	SAMN13280712	JALPNB000000000.1	reference genome	1912983	1912983	Nematocida minor	strain=JUm1510	na	latest	Scaffold	Major	Full	2022-07-13	nmin_JUm1510	University of Toronto	GCA_024244105.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/244/105/GCF_024244105.1_nmin_JUm1510	na	assembly from type material	na	haploid	fungi	3742434	3742134	41.500000	0	138	138	University of Toronto	Annotation submitted by University of Toronto	2022-11-01	2523	2523	0	na
GCF_000738915.1	PRJNA925087	SAMN00779735	AKIJ00000000.1	reference genome	1913371	1913371	Nematocida ausubeli	strain=ERTm6	na	latest	Scaffold	Major	Full	2014-08-11	Nema_sp_1_ERTm6_V2	Broad Institute	GCA_000738915.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/738/915/GCF_000738915.1_Nema_sp_1_ERTm6_V2	na	na	na	haploid	fungi	4276041	4228442	38.500000	0	24	24	Broad Institute	Annotation submitted by Broad Institute	2023-01-26	2490	2430	60	25237020
GCF_030867605.1	PRJNA1032066	SAMN05949356	MOPA00000000.1	reference genome	1914294	1914294	Colletotrichum paranaense	strain=IMI 384185	na	latest	Contig	Major	Full	2023-08-24	CPAR01	University of Western Brittany	GCA_030867605.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/867/605/GCF_030867605.1_CPAR01	na	na	na	haploid	fungi	49177916	49177916	52.000000	0	36	36	University of Western Brittany	Annotation submitted by University of Western Brittany	2023-10-30	16727	16727	0	na
GCF_022496945.1	PRJNA835136	SAMN13172196	JAJKHO000000000.1	reference genome	1927788	1927788	Annulohypoxylon maeteangense	strain=CBS 123835	na	latest	Scaffold	Major	Full	2022-02-28	Annmae1	DOE Joint Genome Institute	GCA_022496945.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/496/945/GCF_022496945.1_Annmae1	na	assembly from type material	na	haploid	fungi	38245008	38244389	45.000000	0	64	82	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-05-06	11144	11000	140	34797921
GCF_030435595.1	PRJNA1031636	SAMN10865799	JAUEPS000000000.1	reference genome	1929756	1929756	Desarmillaria tabescens	strain=CCBAS 213	na	latest	Contig	Major	Full	2023-07-11	Armtab1	DOE Joint Genome Institute	GCA_030435595.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/435/595/GCF_030435595.1_Armtab1	na	na	na	haploid	fungi	74875987	74875987	48.000000	0	659	659	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2023-10-30	19381	19031	280	na
GCF_027946475.1	PRJNA973277	SAMN30184419	JAPEUX000000000.1	reference genome	1932322	1932322	Didymosphaeria variabile	strain=IMI 356815	na	latest	Contig	Major	Full	2023-01-24	ASM2794647v1	Royal Botanic Gardens, Kew	GCA_027946475.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/027/946/475/GCF_027946475.1_ASM2794647v1	na	na	na	haploid	fungi	39450705	39450705	51.000000	0	11	11	Royal Botanic Gardens, Kew	Annotation submitted by Royal Botanic Gardens, Kew	2023-05-19	12728	12535	193	na
GCF_033296635.1	PRJNA1072649	SAMN09643960	JASJRX000000000.1	reference genome	1934379	1934379	Dichotomopilus funicola	strain=CBS 141.50	na	latest	Scaffold	Major	Full	2023-10-26	Chafun1 v1.0	DOE Joint Genome Institute	GCA_033296635.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/033/296/635/GCF_033296635.1_Chafun1_v1.0	na	na	na	haploid	fungi	32615522	32611826	55.000000	0	198	277	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-02-06	9442	9290	152	37820761
GCF_019207285.1	PRJNA756329	SAMN18128854	JAHLUL000000000.1	reference genome	1937702	1937702	Ogataea haglerorum	na	81-453-3	latest	Scaffold	Major	Full	2021-07-13	ASM1920728v1	Colorado College	GCA_019207285.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/207/285/GCF_019207285.1_ASM1920728v1	na	na	na	haploid	fungi	8874124	8874114	49.500000	0	64	64	Colorado College	Annotation submitted by Colorado College	2021-11-22	5407	5407	0	na
GCF_030549165.1	PRJNA1031937	SAMN06310471	JAUIRO000000000.1	reference genome	1954250	1954250	Lasiosphaeria miniovina	strain=SMH2392-1A	na	latest	Contig	Major	Full	2023-07-27	Lasmin1	DOE Joint Genome Institute	GCA_030549165.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/549/165/GCF_030549165.1_Lasmin1	na	na	na	haploid	fungi	49418628	49418628	55.000000	0	10	10	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2023-10-30	15242	14966	273	na
GCF_013461495.1	PRJNA670755	SAMN14689424	JABFCT000000000.1	reference genome	1964551	1964551	Botrytis fragariae	strain=BVB16	na	latest	Contig	Major	Full	2020-07-22	Bfra_R1V1	University of Maryland, College Park	GCA_013461495.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/461/495/GCF_013461495.1_Bfra_R1V1	na	na	na	haploid	fungi	41923773	41923773	41.500000	0	28	28	University of Maryland, College Park	Annotation submitted by University of Maryland, College Park	2020-11-09	12345	12345	0	32648525
GCF_044167205.1	PRJNA1216018	SAMN14683367	JABSNW000000000.1	reference genome	2019550	2019550	Ceratocystis lukuohia	strain=C4212	na	latest	Contig	Major	Full	2024-10-31	ASM4416720v1	Iowa State University	GCA_044167205.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/044/167/205/GCF_044167205.1_ASM4416720v1	na	assembly from type material	na	haploid	fungi	31721542	31721542	48.500000	0	12	12	Iowa State University	Annotation submitted by Iowa State University	2025-01-31	7505	7505	0	na
GCF_029542925.1	PRJNA973670	SAMN27958052	na	reference genome	2020962	2020962	Malassezia vespertilionis	strain=CBS 15041	na	latest	Complete Genome	Major	Full	2023-04-03	ASM2954292v1	Duke University	GCA_029542925.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/029/542/925/GCF_029542925.1_ASM2954292v1	na	assembly from type material	na	haploid	fungi	7595203	7595203	56.500000	9	9	9	Duke University	Annotation submitted by Duke University	2023-05-19	4022	3964	58	na
GCF_028502605.1	PRJNA973574	SAMN30971524	JAOPEN000000000.1	reference genome	2034170	2034170	Trichoderma breve	strain=T069	na	latest	Chromosome	Major	Full	2023-02-09	ASM2850260v1	Hainan University	GCA_028502605.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/502/605/GCF_028502605.1_ASM2850260v1	na	na	na	haploid	fungi	38609973	38609973	49.000000	7	9	9	Hainan University	Annotation submitted by Hainan University	2023-05-19	11590	11590	0	na
GCF_048999995.1	PRJNA1256998	SAMN45900666	JBLFOD000000000.1	reference genome	2035830	2035830	Berkeleyomyces rouxiae	strain=22BRR77	na	latest	Contig	Major	Full	2025-03-26	ASM4899999v1	The University of Queensland	GCA_048999995.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/048/999/995/GCF_048999995.1_ASM4899999v1	na	na	na	haploid	fungi	33322508	33322508	51.500000	0	114	114	The University of Queensland	Annotation submitted by The University of Queensland	2025-05-05	8286	8286	0	na
GCF_000149585.1	PRJNA20041	SAMN02953633	AAJI00000000.1	reference genome	2059318	2059318	Histoplasma mississippiense (nom. inval.)	strain=NAm1	na	latest	Scaffold	Major	Full	2007-07-02	ASM14958v1	Broad Institute	GCA_000149585.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/149/585/GCF_000149585.1_ASM14958v1	na	na	na	haploid	fungi	32988475	30607615	46.000000	0	275	2867	Broad Institute	Annotation submitted by Broad Institute	2017-07-12	9402	9313	77	na
GCF_022605165.1	PRJNA835139	SAMN22138285	na	reference genome	2060973	2060973	Purpureocillium takamizusanense	strain=PT3	na	latest	Complete Genome	Major	Full	2022-03-17	ASM2260516v1	Tokyo University of Science	GCA_022605165.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/605/165/GCF_022605165.1_ASM2260516v1	na	na	na	haploid	fungi	35574015	35574015	58.000000	14	14	14	Tokyo University of Science	Annotation submitted by Tokyo University of Science	2022-05-06	10859	10744	115	na
GCF_033297395.1	PRJNA1105953	SAMN02744857	JASMSO000000000.1	reference genome	2074819	2074819	Canariomyces notabilis	strain=CBS 508.74	na	latest	Scaffold	Major	Full	2023-10-26	Thiar1	DOE Joint Genome Institute	GCA_033297395.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/033/297/395/GCF_033297395.1_Thiar1	na	na	na	haploid	fungi	30991681	30667530	55.000000	0	69	407	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-12-02	11102	10945	153	37820761
GCF_035222275.1	PRJNA1073608	SAMN17076440	JAFFGZ000000000.1	reference genome	2093777	2093777	Podospora bellae-mahoneyi	strain=CBS 112042	na	latest	Chromosome	Major	Full	2024-01-12	CBS112042p_1.0	Uppsala University	GCA_035222275.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/035/222/275/GCF_035222275.1_CBS112042p_1.0	na	assembly from type material	na	haploid	fungi	34330348	34330348	51.500000	7	9	9	Uppsala University	Annotation submitted by Uppsala University	2024-02-07	11463	11053	400	na
GCF_035222375.1	PRJNA1073608	SAMN17076439	JAFFHA000000000.1	reference genome	2093779	2093779	Podospora pseudocomata	strain=CBS 415.72m	na	latest	Chromosome	Major	Full	2024-01-12	CBS415.72m_1.0	Uppsala University	GCA_035222375.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/035/222/375/GCF_035222375.1_CBS415.72m_1.0	na	na	na	haploid	fungi	34981282	34981282	52.500000	7	9	9	Uppsala University	Annotation submitted by Uppsala University	2024-02-07	11725	11321	393	na
GCF_035222475.1	PRJNA1073608	SAMN17076438	JAFFHB000000000.1	reference genome	2093780	2093780	Podospora pseudopauciseta	strain=CBS 411.78	na	latest	Chromosome	Major	Full	2024-01-12	CBS411.78m_1.0	Uppsala University	GCA_035222475.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/035/222/475/GCF_035222475.1_CBS411.78m_1.0	na	assembly from type material	na	haploid	fungi	36064112	36064112	51.000000	7	10	10	Uppsala University	Annotation submitted by Uppsala University	2024-02-07	11579	11167	401	na
GCF_028827025.1	PRJNA973687	SAMN30185314	JAPZBS000000000.1	reference genome	2100454	2100454	Penicillium cataractarum	strain=IBT 29864	na	latest	Contig	Major	Full	2023-02-23	ASM2882702v1	Aalborg University	GCA_028827025.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/827/025/GCF_028827025.1_ASM2882702v1	na	na	na	haploid	fungi	37446941	37446941	49.500000	0	11	11	Aalborg University	Annotation submitted by Aalborg University	2023-06-02	12828	12825	0	36726175
GCF_014461135.1	PRJNA670760	SAMN14825421	JACAZF000000000.1	reference genome	2126181	2126181	Mycena indigotica	strain=171206Taipei	na	latest	Contig	Major	Full	2020-09-03	ASM1446113v1	Academia Sinica	GCA_014461135.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/461/135/GCF_014461135.1_ASM1446113v1	na	na	na	haploid	fungi	72886219	72886219	51.000000	0	30	30	Academia Sinica	Annotation submitted by Academia Sinica	2020-11-09	13735	13735	0	na
GCF_028009165.1	PRJNA973545	SAMN22863613	JAJHUN000000000.1	reference genome	2231603	2231603	Akanthomyces muscarius	strain=Ve6	na	latest	Chromosome	Major	Full	2023-01-26	ASM2800916v1	University of Exeter	GCA_028009165.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/009/165/GCF_028009165.1_ASM2800916v1	na	na	na	haploid	fungi	36207525	36207525	53.000000	6	12	12	University of Exeter	Annotation submitted by University of Exeter	2023-05-19	12347	12347	0	37424543
GCF_029203305.1	PRJNA1128327	SAMN33192236	na	reference genome	2315449	2315449	Yamadazyma tenuis	strain=ATCC 10573	na	latest	Complete Genome	Major	Full	2023-03-14	ASM2920330v1	University of Illinois Urbana-Champaign	GCA_029203305.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/029/203/305/GCF_029203305.1_ASM2920330v1	na	assembly from type material	na	haploid	fungi	10831699	10831699	43.000000	7	7	7	University of Illinois Urbana-Champaign	Annotation submitted by University of Illinois Urbana-Champaign	2024-06-26	5337	5226	111	na
GCF_014898535.1	PRJNA691331	SAMN10219761	RCSX00000000.1	reference genome	2478750	2478750	Botrytis deweyae	strain=B1	na	latest	Contig	Major	Full	2020-10-20	ASM1489853v1	Wageningen University	GCA_014898535.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/898/535/GCF_014898535.1_ASM1489853v1	na	na	na	haploid	fungi	44366920	44366920	41.000000	0	76	76	Wageningen University	Annotation submitted by Wageningen University	2021-02-12	12465	12465	0	na
GCF_022695815.1	PRJNA1072638	SAMN10366861	JALDXI000000000.1	reference genome	2486360	2486360	Exophiala viscosa	strain=JF 03-3F	na	latest	Scaffold	Major	Full	2022-03-25	EurotioJF033F_1	DOE Joint Genome Institute	GCA_022695815.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/695/815/GCF_022695815.1_EurotioJF033F_1	na	assembly from type material	na	haploid	fungi	28289675	28287907	51.500000	0	30	40	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-02-06	11369	11345	24	37221014
GCF_027921745.1	PRJNA973616	SAMN30381985	na	reference genome	2545709	2545709	Schizosaccharomyces osmophilus	strain=CBS 15793	na	latest	Complete Genome	Major	Full	2023-01-20	ASM2792174v1	National Institute of Biological Sciences, Beijing China	GCA_027921745.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/027/921/745/GCF_027921745.1_ASM2792174v1	na	assembly from type material	na	haploid	fungi	11416521	11416521	38.500000	3	3	3	National Institute of Biological Sciences, Beijing China	Annotation submitted by National Institute of Biological Sciences, Beijing China	2023-05-19	5574	5098	476	36748990
GCF_033297405.1	PRJNA1072651	SAMN02744865	JASMSN000000000.1	reference genome	2587402	2587402	Parathielavia appendiculata	strain=CBS 731.68	na	latest	Scaffold	Major	Full	2023-10-26	Thiap1	DOE Joint Genome Institute	GCA_033297405.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/033/297/405/GCF_033297405.1_Thiap1	na	na	na	haploid	fungi	32737472	32222229	56.000000	0	109	559	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2024-02-06	12100	11916	167	37820761
GCF_902498895.1	PRJNA602436	SAMEA5939090	CABVLU000000000.1	reference genome	2606893	2606893	Magnusiomyces paraingens	strain=CBS 517.90	na	latest	Contig	Major	Full	2019-09-20	sapIngB	Comenius University, Faculty of Mathematics, Physics and Informatics	GCA_902498895.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/498/895/GCF_902498895.1_sapIngB	na	assembly from type material	na	haploid	fungi	21189208	21189208	37.000000	0	6	6	Comenius University, Faculty of Mathematics, Physics and Informatics	Annotation submitted by Comenius University, Faculty of Mathematics, Physics and Informatics	2024-12-02	6475	6475	0	na
GCF_035222485.1	PRJNA1073608	SAMN17076437	JAFFHC000000000.1	reference genome	2609844	2609844	Podospora pseudoanserina	strain=CBS 124.78	na	latest	Chromosome	Major	Full	2024-01-12	CBS124.78p_1.0	Uppsala University	GCA_035222485.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/035/222/485/GCF_035222485.1_CBS124.78p_1.0	na	na	na	haploid	fungi	34828952	34828952	52.000000	7	9	9	Uppsala University	Annotation submitted by Uppsala University	2024-02-07	11544	11140	399	na
GCF_019669845.1	PRJNA801199	SAMN12811583	JAFMPH000000000.1	reference genome	2614577	2614577	Emericellopsis atlantica	strain=TS7	na	latest	Scaffold	Major	Full	2021-08-18	AcreTS7_1	DOE Joint Genome Institute	GCA_019669845.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/669/845/GCF_019669845.1_AcreTS7_1	na	assembly from type material	na	haploid	fungi	27300990	27298605	54.000000	0	114	162	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-01-28	10066	9962	103	34372938
GCF_003357145.1	PRJNA602438	SAMN07173322	NPIC00000000.1	reference genome	2656787	2656787	Venustampulla echinocandica	strain=BP 5553	na	latest	Scaffold	Major	Full	2018-08-03	ASM335714v1	The University of Texas Health Science Center at Houston	GCA_003357145.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/357/145/GCF_003357145.1_ASM335714v1	na	assembly from type material	na	haploid	fungi	33639795	33586049	48.000000	0	32	32	The University of Texas Health Science Center at Houston	Annotation submitted by The University of Texas Health Science Center at Houston	2020-01-24	10707	10707	0	30018880
GCF_020744385.1	PRJNA801208	SAMN06296991	JAHBOO000000000.1	reference genome	2675880	2675880	Fusarium flagelliforme	strain=FIESC 12 MPI-CAGE-AA-0113	na	latest	Contig	Major	Full	2021-11-05	Fuseq1	DOE Joint Genome Institute	GCA_020744385.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/744/385/GCF_020744385.1_Fuseq1	na	na	na	haploid	fungi	40328194	40328194	48.000000	0	15	15	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2022-01-28	13910	13580	328	na
GCF_022114955.1	PRJNA895874	SAMN18524397	JAGIXG000000000.2	reference genome	2686198	2686198	Emericellopsis cladophorae	strain=MUM 19.33	na	latest	Scaffold	Major	Full	2022-08-29	ASM2211495v2	Universidade de Aveiro	GCA_022114955.2	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/114/955/GCF_022114955.1_ASM2211495v2	na	na	na	haploid	fungi	26937373	26937209	54.500000	0	306	306	Universidade de Aveiro	Annotation submitted by Universidade de Aveiro	2022-11-01	8523	8523	0	35049971
GCF_019456465.1	PRJNA774196	SAMN20307476	JAHXPR000000000.1	reference genome	2732470	2732470	Bacidia gigantensis	strain=McMullin 20006	na	latest	Contig	Major	Full	2021-08-06	ASM1945646v1	Eastern Washington University	GCA_019456465.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/456/465/GCF_019456465.1_ASM1945646v1	na	na	na	haploid	fungi	33117897	33117897	44.500000	0	24	24	Eastern Washington University	Annotation submitted by Eastern Washington University	2021-11-23	9279	9228	51	na
GCF_002105105.1	PRJNA721999	SAMN05421899	MCFI00000000.1	reference genome	2754530	2754530	Protomyces lactucae-debilis	strain=12-1054	na	latest	Contig	Major	Full	2017-04-20	Prola1	DOE Joint Genome Institute	GCA_002105105.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/105/105/GCF_002105105.1_Prola1	na	na	na	haploid	fungi	12928838	12928838	51.000000	0	44	44	DOE Joint Genome Institute	Annotation submitted by DOE Joint Genome Institute	2021-04-20	6768	6722	45	na
GCF_041146345.1	PRJNA1175686	SAMN40983588	JBFMKM000000000.1	reference genome	2781224	2781224	Neodothiora populina	strain=CPC 39397	na	latest	Contig	Major	Full	2024-08-08	N_Populina_1.0	University of Alaska Fairbanks	GCA_041146345.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/041/146/345/GCF_041146345.1_N_Populina_1.0	na	na	na	haploid	fungi	23962758	23962758	51.000000	0	18	18	University of Alaska Fairbanks	Annotation submitted by University of Alaska Fairbanks	2024-10-23	7339	7339	0	na
GCF_028827545.1	PRJNA973687	SAMN30185328	JAPWDQ000000000.1	reference genome	2819901	2819901	Penicillium diatomitis	strain=IBT 30728	na	latest	Contig	Major	Full	2023-02-23	ASM2882754v1	Aalborg University	GCA_028827545.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/827/545/GCF_028827545.1_ASM2882754v1	na	na	na	haploid	fungi	33965862	33965862	49.000000	0	19	19	Aalborg University	Annotation submitted by Aalborg University	2023-06-06	9582	9580	0	36726175
GCF_038363925.1	PRJNA1140273	SAMN32724326	JAQQWL000000000.1	reference genome	2905665	2905665	Apiospora phragmitis	strain=CBS 135458	na	latest	Contig	Major	Full	2024-04-17	ASM3836392v1	Aalborg university	GCA_038363925.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/038/363/925/GCF_038363925.1_ASM3836392v1	na	assembly from type material	na	haploid	fungi	52445507	52445507	49.500000	0	18	18	Aalborg university	Annotation submitted by Aalborg university	2024-07-31	15411	15411	0	na
GCF_021821965.1	PRJNA1031633	SAMN14823605	JACCJH000000000.1	reference genome	3039483	3039483	Ordospora pajunii	strain=FI-F-10	na	latest	Contig	Major	Full	2022-02-01	FI-F-10 v. 1	Illinois Institute of Technology	GCA_021821965.1	identical	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/821/965/GCF_021821965.1_FI-F-10_v._1	na	assembly from type material	na	haploid	fungi	2206487	2206487	43.000000	0	22	22	Illinois Institute of Technology	Annotation submitted by Illinois Institute of Technology	2023-10-30	1877	1826	51	na
GCF_964197705.1	PRJNA1256999	SAMEA115480917	CAXMXA000000000.1	reference genome	3158075	3158075	Penicillium psychrofluorescens	na	KMR99	latest	Chromosome	Major	Full	2025-01-17	Pfluo_KMR99	THE UNIVERSITY OF NEW SOUTH WALES	GCA_964197705.1	different	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/964/197/705/GCF_964197705.1_Pfluo_KMR99	na	na	na	haploid	fungi	26257727	26257727	52.000000	6	8	8	THE UNIVERSITY OF NEW SOUTH WALES	Annotation submitted by THE UNIVERSITY OF NEW SOUTH WALES	2025-05-05	9618	9519	99	na