---
title: "01-summarize-MinION-runs"
author: "Kathleen Durkin"
date: "2025-09-29"
always_allow_html: true
output: 
  github_document:
    toc: true
    toc_depth: 3
    number_sections: true
    html_preview: true 
  bookdown::html_document2:
    theme: cosmo
    toc: true
    toc_float: true
    number_sections: true
    code_folding: show
    code_download: true
---

```{r setup, include=FALSE}
library(knitr)
knitr::opts_chunk$set(
  echo = TRUE,         # Display code chunks
  eval = FALSE,        # Evaluate code chunks
  warning = FALSE,     # Hide warnings
  message = FALSE,     # Hide messages
  comment = ""         # Prevents appending '##' to beginning of lines in code output
)
```

High-level summary of all 5 MinION sequencing runs:

- Group 1, Library 4 (modern specimens)

- Group 2, Library 2 (1960s specimens)

- Group 2, Library 3 (1960s specimens)

- Group 4, Library 1 (late 1800s specimens)

- Group 4, Library 2 (late 1800s specimens)

