--- title: "Opening an RStudio instance in Klone" author: "Kathleen Durkin" date: "2025-02-19" categories: ["misc"] format: html: toc: true code-fold: true engine: knitr #bibliography: ../../../references.bib --- ## General instructions: Open Cygwin (or other Unix tool) ``` ssh kdurkin1@klone.hyak.uw.edu ``` Enter UW NetID password and complete the DUO prompt Once I've accessed Klone, I'm in the `/mmfs1/home/kdurkin1` directory. All of the Roberts lab resources, however, are located in the `/gscratch/srlab/` directory ``` cd /gscratch/srlab/ ``` I have my own subdirectory, `/gscratch/srlab/kdurkin1` To launch an RStudio server, run the .job file I have stored in my directory (edit if necessary using `nano`): ``` cd /gscratch/srlab/kdurkin1 sbatch rstudio-server-ckpt.job cat *.out ``` Open the output file, follow instructions by opening the directed ssh tunnel and signing in via NetID, then opening a webpage at the provided web address ## Resources Potentially helpful commands: `hyakalloc` : shows me what computational resources I have access to `squeue | grep kdurkin1` : shows what jobs I have running [Klone instructions (handbook)](https://robertslab.github.io/resources/klone_RStudio-Server/)\ [Video walkthrough](https://washington.zoom.us/rec/share/tM_4zmytAnDQrPoIxqDH0Q7RpaZviXcs9ih7ypUPSJCbaQc0Kwa6NnsqdeMvkvdF.P4qX95_arDgBeGMF)\ [My github issue troubleshooting this process](https://github.com/RobertsLab/resources/issues/2066)\